Wall clock time and date at job start Wed Apr 1 2020 00:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 102.99955 * 2 1 4 4 H 1.09003 * 109.47435 * 305.00017 * 3 2 1 5 5 C 1.53000 * 109.47312 * 65.00083 * 3 2 1 6 6 C 1.50695 * 109.47222 * 184.99940 * 3 2 1 7 7 O 1.21289 * 120.00101 * 339.99951 * 6 3 2 8 8 N 1.34779 * 120.00418 * 160.27223 * 6 3 2 9 9 C 1.47360 * 125.57018 * 359.42277 * 8 6 3 10 10 C 1.55098 * 104.65823 * 154.72329 * 9 8 6 11 11 C 1.54933 * 101.78997 * 37.42593 * 10 9 8 12 12 H 1.08995 * 113.37285 * 87.69093 * 11 10 9 13 13 C 1.53783 * 108.81003 * 214.02604 * 11 10 9 14 14 N 1.47857 * 107.12715 * 113.29139 * 13 11 10 15 15 C 1.46900 * 110.99589 * 212.89896 * 14 13 11 16 16 C 1.50697 * 109.47137 * 300.90737 * 15 14 13 17 17 O 1.21284 * 120.00094 * 354.02447 * 16 15 14 18 18 N 1.34779 * 119.99781 * 174.02650 * 16 15 14 19 19 C 1.37093 * 119.99737 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00314 * 0.02562 * 19 18 16 21 21 C 1.38958 * 120.00002 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99890 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99903 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47252 * 60.00039 * 23 21 19 25 25 H 1.48505 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47122 * 300.00000 * 23 21 19 27 27 C 1.48419 * 105.77324 * 333.37941 * 14 13 11 28 28 C 1.46850 * 125.57746 * 179.72279 * 8 6 3 29 29 H 1.08995 * 112.02146 * 58.24258 * 28 8 6 30 30 H 1.09006 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47195 * 300.00280 * 1 2 3 32 32 H 1.09004 * 109.47251 * 60.00117 * 1 2 3 33 33 H 1.09005 * 109.47403 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46818 * 299.99860 * 5 3 2 35 35 H 1.08994 * 109.47158 * 59.99656 * 5 3 2 36 36 H 1.08999 * 110.37456 * 273.65073 * 9 8 6 37 37 H 1.09002 * 110.37952 * 36.00101 * 9 8 6 38 38 H 1.08998 * 111.15989 * 279.23488 * 10 9 8 39 39 H 1.09000 * 110.85957 * 155.48348 * 10 9 8 40 40 H 1.08992 * 109.91158 * 353.91161 * 13 11 10 41 41 H 1.09009 * 110.05512 * 232.73891 * 13 11 10 42 42 H 1.09006 * 109.47298 * 60.90932 * 15 14 13 43 43 H 1.08999 * 109.46792 * 180.90673 * 15 14 13 44 44 H 0.97002 * 120.00439 * 0.02562 * 18 16 15 45 45 H 0.96990 * 120.00018 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.58959 * 280.54735 * 27 14 13 47 47 H 1.08998 * 110.71692 * 157.69125 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7141 1.9385 -0.1238 7 8 4.4552 1.0199 0.1556 8 7 4.2255 3.1141 -0.5398 9 6 3.4425 4.3045 -0.9156 10 6 4.4036 5.4981 -0.6765 11 6 5.7622 4.9060 -1.1281 12 1 5.9543 5.0283 -2.1940 13 6 6.8775 5.4983 -0.2506 14 7 7.4278 4.3913 0.5604 15 6 7.8678 4.8716 1.8771 16 6 8.9217 5.9338 1.6978 17 8 9.3500 6.1824 0.5907 18 7 9.3884 6.6074 2.7679 19 6 10.3475 7.5733 2.6049 20 1 10.7288 7.7947 1.6191 21 6 10.8282 8.2682 3.7081 22 7 10.3639 7.9991 4.9076 23 14 12.1346 9.5848 3.4858 24 1 11.6171 10.6493 2.5889 25 1 12.4744 10.1729 4.8065 26 1 13.3505 8.9794 2.8854 27 6 6.3277 3.4041 0.6948 28 6 5.6538 3.4162 -0.6984 29 1 6.1408 2.7344 -1.3956 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.9876 3.4638 1.3072 34 1 0.6635 2.2778 1.3969 35 1 2.2354 1.9149 2.1491 36 1 3.1521 4.2520 -1.9649 37 1 2.5608 4.3948 -0.2810 38 1 4.4307 5.7765 0.3770 39 1 4.1250 6.3508 -1.2957 40 1 6.4667 6.2682 0.4024 41 1 7.6609 5.9235 -0.8782 42 1 7.0169 5.2910 2.4139 43 1 8.2830 4.0403 2.4469 44 1 9.0461 6.4083 3.6535 45 1 10.6997 8.4839 5.6776 46 1 5.6227 3.7183 1.4643 47 1 6.7236 2.4139 0.9205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186925018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:07 Heat of formation + Delta-G solvation = -47.795208 kcal Electronic energy + Delta-G solvation = -28033.878159 eV Core-core repulsion = 24150.337210 eV Total energy + Delta-G solvation = -3883.540949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96786 -39.00691 -37.91639 -35.74309 -33.95712 -33.65874 -31.97135 -31.24321 -30.14390 -29.20438 -27.66149 -26.54746 -25.06072 -24.24527 -23.10052 -21.26988 -20.48680 -19.53156 -18.96902 -17.82689 -17.76975 -16.99020 -16.22853 -15.95530 -15.58235 -15.32757 -14.90912 -14.79538 -14.58521 -14.29339 -14.06873 -13.93133 -13.71233 -13.53831 -13.35547 -13.26071 -12.89541 -12.84397 -12.61903 -12.33024 -12.26805 -12.05458 -11.94772 -11.80441 -11.50107 -11.23679 -11.02393 -10.94189 -10.84590 -10.71487 -10.44541 -10.22263 -10.21748 -10.07362 -9.48530 -8.95012 -8.44378 -8.01836 -8.00341 -7.91880 -6.41855 -3.82734 1.07224 2.11927 2.34714 2.66362 3.19564 3.25408 3.29693 3.89505 3.91397 4.04875 4.20312 4.27014 4.35924 4.46265 4.51193 4.60214 4.69623 4.73698 4.83641 4.94914 5.02713 5.04166 5.06347 5.18793 5.24535 5.27107 5.31108 5.37202 5.41332 5.61525 5.62442 5.70372 5.82722 5.83767 5.95259 5.99407 6.03360 6.22229 6.27483 6.49230 7.14726 7.18279 7.24475 7.54681 7.85990 8.05473 8.61319 9.17537 9.53884 10.05551 10.75836 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002146 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.426847 B =13045.479858 C =13347.172440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.186 6.186 3 C -0.090 4.090 4 H 0.106 0.894 5 C -0.144 4.144 6 C 0.548 3.452 7 O -0.511 6.511 8 N -0.610 5.610 9 C 0.095 3.905 10 C -0.128 4.128 11 C -0.106 4.106 12 H 0.102 0.898 13 C 0.053 3.947 14 N -0.490 5.490 15 C 0.038 3.962 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.031 3.969 28 C 0.142 3.858 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.043 0.957 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.391 -9.163 -8.992 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.040 5.960 3 C -0.222 4.222 4 H 0.124 0.876 5 C -0.203 4.203 6 C 0.334 3.666 7 O -0.386 6.386 8 N -0.345 5.345 9 C -0.027 4.027 10 C -0.167 4.167 11 C -0.126 4.126 12 H 0.120 0.880 13 C -0.075 4.075 14 N -0.214 5.214 15 C -0.093 4.093 16 C 0.228 3.772 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.098 4.098 28 C 0.038 3.962 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.539 -10.592 -9.601 25.851 hybrid contribution -1.226 2.050 1.034 2.603 sum -22.765 -8.542 -8.568 25.780 Atomic orbital electron populations 1.23559 0.95734 1.06728 1.04882 1.87520 1.04755 1.05892 1.97844 1.23304 0.97093 0.98417 1.03357 0.87629 1.22033 1.01926 1.01248 0.95082 1.19266 0.88615 0.81433 0.77250 1.90777 1.60333 1.39241 1.48218 1.48417 1.07742 1.12061 1.66283 1.22529 0.95181 0.84547 1.00491 1.22993 0.94088 0.96917 1.02654 1.23086 0.95307 0.93010 1.01189 0.87958 1.22887 0.95766 0.92774 0.96096 1.64517 1.31941 1.11450 1.13525 1.22081 0.97862 0.98622 0.90769 1.19690 0.86496 0.85274 0.85709 1.90498 1.62015 1.69028 1.24702 1.41859 1.36488 1.33566 1.08122 1.19645 1.15256 1.12353 0.95592 0.87949 1.25269 0.98944 0.99103 0.94660 1.69603 1.43719 1.42483 0.98520 0.85917 0.80657 0.80387 0.77241 1.19944 1.20997 1.19863 1.23506 0.92553 0.98156 0.95591 1.22469 0.79867 0.96386 0.97473 0.88305 0.87733 0.90343 0.90580 0.91064 0.91192 0.90377 0.90878 0.90469 0.90308 0.89334 0.93681 0.88087 0.93587 0.89058 0.77497 0.91821 0.93880 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 10.45 101.05 1.06 0.29 16 2 S -0.19 -1.84 21.04 -107.50 -2.26 -4.10 16 3 C -0.09 -0.78 2.44 -27.89 -0.07 -0.84 16 4 H 0.11 0.68 7.66 -51.92 -0.40 0.29 16 5 C -0.14 -0.99 8.97 37.16 0.33 -0.66 16 6 C 0.55 6.60 6.83 -10.99 -0.08 6.52 16 7 O -0.51 -8.26 16.06 5.55 0.09 -8.17 16 8 N -0.61 -6.46 2.96 -161.36 -0.48 -6.94 16 9 C 0.10 0.69 6.42 -2.46 -0.02 0.67 16 10 C -0.13 -1.08 6.35 -24.60 -0.16 -1.24 16 11 C -0.11 -1.19 4.00 -87.90 -0.35 -1.54 16 12 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 13 C 0.05 0.82 4.97 -2.89 -0.01 0.80 16 14 N -0.49 -8.40 5.12 -232.28 -1.19 -9.59 16 15 C 0.04 0.71 5.30 -4.98 -0.03 0.68 16 16 C 0.44 10.46 7.40 -10.99 -0.08 10.38 16 17 O -0.58 -15.39 14.07 5.55 0.08 -15.31 16 18 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.03 0.45 5.59 -2.05 -0.01 0.44 16 28 C 0.14 1.76 3.85 -65.52 -0.25 1.51 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.08 0.35 7.14 -51.93 -0.37 -0.02 16 32 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.07 0.43 6.52 -51.93 -0.34 0.10 16 34 H 0.07 0.35 6.92 -51.93 -0.36 -0.01 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.42 5.95 -51.93 -0.31 0.11 16 38 H 0.08 0.75 7.53 -51.93 -0.39 0.36 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 41 H 0.10 1.85 6.96 -51.92 -0.36 1.49 16 42 H 0.05 0.77 7.99 -51.93 -0.42 0.36 16 43 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 44 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.04 0.62 7.88 -51.93 -0.41 0.21 16 47 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -33.45 384.31 -9.58 -43.03 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.35 Total: 8.43 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 0.10 Total: 9.06 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -1.00 Total: -54.71 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.26 Total: -4.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.45 -9.58 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186925018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.770 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds