Wall clock time and date at job start Wed Apr 1 2020 01:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47029 * 2 1 4 4 C 1.34781 * 120.00162 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99398 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00256 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.46894 * 179.97438 * 6 4 3 8 8 C 1.46480 * 111.00077 * 293.95438 * 7 6 4 9 9 C 1.53066 * 108.73583 * 191.10908 * 8 7 6 10 10 C 1.53116 * 108.99639 * 297.15965 * 9 8 7 11 11 H 1.09000 * 113.48771 * 272.05558 * 10 9 8 12 12 C 1.54479 * 111.17719 * 140.42266 * 10 9 8 13 13 N 1.47737 * 85.89767 * 270.38349 * 12 10 9 14 14 C 1.34777 * 134.86542 * 154.43741 * 13 12 10 15 15 O 1.21288 * 120.00091 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99881 * 359.95280 * 14 13 12 17 17 S 1.81004 * 109.46887 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99724 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00232 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31637 * 120.00154 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00208 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47225 * 90.00054 * 22 20 18 24 24 H 1.48503 * 109.47343 * 210.00151 * 22 20 18 25 25 H 1.48499 * 109.46837 * 329.99983 * 22 20 18 26 26 C 1.46985 * 90.27122 * 334.40250 * 13 12 10 27 27 H 1.09004 * 111.86652 * 274.06236 * 26 13 12 28 28 C 1.45459 * 111.00192 * 60.32433 * 7 6 4 29 29 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47583 * 300.00714 * 1 2 3 31 31 H 1.09004 * 109.46691 * 60.00852 * 1 2 3 32 32 H 1.09003 * 109.47473 * 239.99235 * 2 1 3 33 33 H 1.09000 * 109.46827 * 119.99650 * 2 1 3 34 34 H 0.97001 * 120.00558 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46814 * 60.00022 * 6 4 3 36 36 H 1.09000 * 109.47332 * 299.99931 * 6 4 3 37 37 H 1.09001 * 109.59673 * 71.33557 * 8 7 6 38 38 H 1.08998 * 109.71738 * 310.95627 * 8 7 6 39 39 H 1.08995 * 109.55059 * 57.01821 * 9 8 7 40 40 H 1.09003 * 109.54620 * 177.30994 * 9 8 7 41 41 H 1.08997 * 113.80952 * 24.62642 * 12 10 9 42 42 H 1.09004 * 113.80535 * 156.14070 * 12 10 9 43 43 H 1.09006 * 109.46901 * 299.99929 * 16 14 13 44 44 H 1.08999 * 109.47387 * 60.00128 * 16 14 13 45 45 H 0.97003 * 119.99880 * 180.02562 * 21 20 18 46 46 H 1.09005 * 108.49381 * 307.17466 * 28 7 6 47 47 H 1.09001 * 108.50347 * 64.78529 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0483 -0.0001 7 7 5.3147 3.0483 0.0013 8 6 5.8385 2.4939 1.2519 9 6 7.3426 2.7698 1.3201 10 6 8.0352 2.0446 0.1631 11 1 8.3217 1.0203 0.4016 12 6 9.1569 2.9132 -0.4483 13 7 8.1105 3.4451 -1.3454 14 6 7.9384 4.5934 -2.0296 15 8 6.9450 4.7527 -2.7070 16 6 8.9800 5.6798 -1.9526 17 16 8.4641 7.0837 -2.9718 18 6 9.8235 8.1722 -2.7040 19 1 10.6383 7.8708 -2.0623 20 6 9.8472 9.4169 -3.3176 21 7 10.8631 10.2299 -3.1179 22 14 8.4377 9.9386 -4.4268 23 1 7.4028 10.6325 -3.6190 24 1 8.9470 10.8590 -5.4749 25 1 7.8426 8.7387 -5.0684 26 6 7.3346 2.2069 -1.1859 27 1 7.6476 1.4379 -1.8921 28 6 5.8371 2.3751 -1.1776 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4819 3.5626 0.8895 36 1 3.4829 3.5617 -0.8905 37 1 5.6627 1.4185 1.2771 38 1 5.3416 2.9655 2.0997 39 1 7.5209 3.8419 1.2377 40 1 7.7377 2.4047 2.2681 41 1 9.5645 3.6538 0.2398 42 1 9.9272 2.3387 -0.9629 43 1 9.0911 6.0039 -0.9178 44 1 9.9328 5.2962 -2.3175 45 1 10.8795 11.1000 -3.5464 46 1 5.3779 1.3887 -1.2444 47 1 5.5508 2.9489 -2.0590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221289754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:34 Heat of formation + Delta-G solvation = -21.780340 kcal Electronic energy + Delta-G solvation = -28015.616451 eV Core-core repulsion = 24133.203591 eV Total energy + Delta-G solvation = -3882.412860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23418 -40.03687 -37.81145 -36.51178 -35.33701 -32.38942 -32.22019 -31.27816 -30.54547 -28.91585 -27.67984 -25.71187 -25.54970 -23.74201 -23.22776 -21.91846 -20.88582 -20.27053 -18.26121 -17.68713 -17.15307 -16.88621 -16.44550 -16.24396 -15.89625 -15.55000 -15.18734 -14.92077 -14.69737 -14.52336 -14.44620 -13.92346 -13.83612 -13.31877 -13.24109 -12.93109 -12.75369 -12.61902 -12.44445 -12.31823 -12.29147 -12.09836 -11.89066 -11.66525 -11.43434 -11.20920 -11.05086 -10.96607 -10.79726 -10.62281 -10.51695 -10.34081 -9.79995 -9.44129 -9.15509 -8.95339 -8.43171 -8.39914 -8.09659 -6.84241 -6.23982 -3.94388 2.28299 2.73695 2.84493 3.16490 3.23190 3.36782 3.54612 3.65354 3.69397 4.22190 4.37682 4.40539 4.58446 4.60584 4.63029 4.65930 4.81975 4.85807 4.93530 5.11917 5.15008 5.20229 5.21497 5.28548 5.32777 5.33494 5.41809 5.43996 5.46661 5.53613 5.55700 5.69491 5.70061 5.82120 5.88559 5.97059 6.03623 6.13197 6.14156 6.17624 6.34105 6.83474 7.08146 7.13936 7.87325 7.98918 8.01362 8.46911 8.66936 9.22462 10.85314 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002592 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.268589 B =10800.449566 C =11950.333177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.733 5.733 4 C 0.480 3.520 5 O -0.536 6.536 6 C 0.041 3.959 7 N -0.508 5.508 8 C 0.049 3.951 9 C -0.096 4.096 10 C -0.118 4.118 11 H 0.093 0.907 12 C 0.102 3.898 13 N -0.637 5.637 14 C 0.560 3.440 15 O -0.518 6.518 16 C -0.115 4.115 17 S -0.142 6.142 18 C -0.519 4.519 19 H 0.087 0.913 20 C 0.094 3.906 21 N -0.882 5.882 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.150 3.850 27 H 0.085 0.915 28 C 0.039 3.961 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.270 0.730 46 H 0.072 0.928 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.462 -22.455 11.207 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.387 5.387 4 C 0.266 3.734 5 O -0.414 6.414 6 C -0.091 4.091 7 N -0.230 5.230 8 C -0.078 4.078 9 C -0.134 4.134 10 C -0.137 4.137 11 H 0.111 0.889 12 C -0.021 4.021 13 N -0.376 5.376 14 C 0.350 3.650 15 O -0.393 6.393 16 C -0.265 4.265 17 S 0.084 5.916 18 C -0.666 4.666 19 H 0.105 0.895 20 C -0.114 4.114 21 N -0.519 5.519 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C 0.047 3.953 27 H 0.103 0.897 28 C -0.089 4.089 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.118 -22.029 10.000 29.636 hybrid contribution 0.253 -0.175 0.286 0.420 sum -16.864 -22.204 10.285 29.719 Atomic orbital electron populations 1.22006 0.94443 1.03245 1.02592 1.21281 0.94255 0.83384 1.02247 1.46331 1.07628 1.08885 1.75870 1.22488 0.82158 0.93488 0.75273 1.90618 1.54621 1.46925 1.49223 1.22327 0.89595 0.91754 1.05443 1.61055 1.03373 1.55827 1.02785 1.22081 0.95344 0.99278 0.91107 1.21420 0.94163 1.01300 0.96504 1.23004 0.96188 0.99538 0.94940 0.88911 1.23403 0.91977 0.95587 0.91151 1.49880 1.23465 1.14865 1.49402 1.19787 0.87019 0.80984 0.77255 1.90655 1.30015 1.79061 1.39531 1.23211 1.00362 0.97801 1.05139 1.84730 1.32861 1.12390 1.61599 1.22331 1.06537 1.02605 1.35170 0.89494 1.24717 0.95940 0.95151 0.95587 1.69948 1.29983 1.09013 1.42921 0.86721 0.82693 0.80961 0.81392 1.19239 1.20042 1.15927 1.21879 0.92190 0.85817 0.95450 0.89690 1.21596 0.94016 0.99796 0.93509 0.90849 0.91957 0.91882 0.91637 0.91675 0.76474 0.87604 0.87399 0.92407 0.91224 0.90511 0.91086 0.89778 0.89935 0.88907 0.89002 0.92024 0.91036 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.03 37.16 0.37 -0.24 16 2 C 0.11 0.71 6.39 -4.04 -0.03 0.68 16 3 N -0.73 -4.93 5.56 -60.30 -0.33 -5.27 16 4 C 0.48 4.62 7.19 -10.98 -0.08 4.54 16 5 O -0.54 -6.85 11.81 5.56 0.07 -6.79 16 6 C 0.04 0.38 5.82 -4.98 -0.03 0.35 16 7 N -0.51 -6.24 4.75 -239.06 -1.14 -7.37 16 8 C 0.05 0.53 5.00 -4.02 -0.02 0.51 16 9 C -0.10 -0.97 5.72 -26.64 -0.15 -1.13 16 10 C -0.12 -1.18 4.44 -89.91 -0.40 -1.58 16 11 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 12 C 0.10 1.11 7.97 -2.88 -0.02 1.09 16 13 N -0.64 -9.58 3.37 -173.24 -0.58 -10.16 16 14 C 0.56 10.97 8.00 -10.98 -0.09 10.89 16 15 O -0.52 -11.81 15.10 5.55 0.08 -11.73 16 16 C -0.11 -2.40 5.93 36.01 0.21 -2.19 16 17 S -0.14 -3.74 18.55 -107.50 -1.99 -5.74 16 18 C -0.52 -15.33 10.04 30.94 0.31 -15.02 16 19 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 20 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -27.03 13.97 55.49 0.78 -26.25 16 22 Si 0.86 22.21 27.74 -169.99 -4.72 17.50 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 26 C 0.15 1.92 4.29 -69.18 -0.30 1.63 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 C 0.04 0.52 4.78 -5.76 -0.03 0.49 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 1.66 8.47 -40.82 -0.35 1.32 16 35 H 0.11 0.76 8.00 -51.93 -0.42 0.35 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.67 6.15 -51.93 -0.32 0.35 16 38 H 0.07 0.66 7.97 -51.93 -0.41 0.25 16 39 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.88 7.95 -51.93 -0.41 0.46 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.85 8.14 -51.91 -0.42 1.43 16 44 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.07 0.98 5.12 -51.93 -0.27 0.72 16 47 H 0.09 1.46 6.83 -51.93 -0.35 1.10 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -36.91 385.14 -9.95 -46.86 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.58 Total: 0.40 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.34 Total: 2.75 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -1.28 Total: -49.06 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.15 Total: -18.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.72 Total: 17.50 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.91 -9.95 -46.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221289754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.080 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds