Wall clock time and date at job start Wed Apr 1 2020 01:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47029 * 2 1 4 4 C 1.34781 * 120.00162 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99398 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00256 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.46894 * 179.97438 * 6 4 3 8 8 C 1.46480 * 111.00077 * 293.95438 * 7 6 4 9 9 C 1.53066 * 108.73583 * 191.10908 * 8 7 6 10 10 C 1.53116 * 108.99639 * 297.15965 * 9 8 7 11 11 H 1.09000 * 113.48771 * 272.05558 * 10 9 8 12 12 C 1.54479 * 111.17719 * 140.42266 * 10 9 8 13 13 N 1.47737 * 85.89767 * 270.38349 * 12 10 9 14 14 C 1.34777 * 134.86542 * 154.43741 * 13 12 10 15 15 O 1.21288 * 120.00091 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99881 * 359.95280 * 14 13 12 17 17 S 1.81004 * 109.46887 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99724 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00232 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31637 * 120.00154 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00208 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47225 * 90.00054 * 22 20 18 24 24 H 1.48503 * 109.47343 * 210.00151 * 22 20 18 25 25 H 1.48499 * 109.46837 * 329.99983 * 22 20 18 26 26 C 1.46985 * 90.27122 * 334.40250 * 13 12 10 27 27 H 1.09004 * 111.86652 * 274.06236 * 26 13 12 28 28 C 1.45459 * 111.00192 * 60.32433 * 7 6 4 29 29 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47583 * 300.00714 * 1 2 3 31 31 H 1.09004 * 109.46691 * 60.00852 * 1 2 3 32 32 H 1.09003 * 109.47473 * 239.99235 * 2 1 3 33 33 H 1.09000 * 109.46827 * 119.99650 * 2 1 3 34 34 H 0.97001 * 120.00558 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46814 * 60.00022 * 6 4 3 36 36 H 1.09000 * 109.47332 * 299.99931 * 6 4 3 37 37 H 1.09001 * 109.59673 * 71.33557 * 8 7 6 38 38 H 1.08998 * 109.71738 * 310.95627 * 8 7 6 39 39 H 1.08995 * 109.55059 * 57.01821 * 9 8 7 40 40 H 1.09003 * 109.54620 * 177.30994 * 9 8 7 41 41 H 1.08997 * 113.80952 * 24.62642 * 12 10 9 42 42 H 1.09004 * 113.80535 * 156.14070 * 12 10 9 43 43 H 1.09006 * 109.46901 * 299.99929 * 16 14 13 44 44 H 1.08999 * 109.47387 * 60.00128 * 16 14 13 45 45 H 0.97003 * 119.99880 * 180.02562 * 21 20 18 46 46 H 1.09005 * 108.49381 * 307.17466 * 28 7 6 47 47 H 1.09001 * 108.50347 * 64.78529 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0483 -0.0001 7 7 5.3147 3.0483 0.0013 8 6 5.8385 2.4939 1.2519 9 6 7.3426 2.7698 1.3201 10 6 8.0352 2.0446 0.1631 11 1 8.3217 1.0203 0.4016 12 6 9.1569 2.9132 -0.4483 13 7 8.1105 3.4451 -1.3454 14 6 7.9384 4.5934 -2.0296 15 8 6.9450 4.7527 -2.7070 16 6 8.9800 5.6798 -1.9526 17 16 8.4641 7.0837 -2.9718 18 6 9.8235 8.1722 -2.7040 19 1 10.6383 7.8708 -2.0623 20 6 9.8472 9.4169 -3.3176 21 7 10.8631 10.2299 -3.1179 22 14 8.4377 9.9386 -4.4268 23 1 7.4028 10.6325 -3.6190 24 1 8.9470 10.8590 -5.4749 25 1 7.8426 8.7387 -5.0684 26 6 7.3346 2.2069 -1.1859 27 1 7.6476 1.4379 -1.8921 28 6 5.8371 2.3751 -1.1776 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4819 3.5626 0.8895 36 1 3.4829 3.5617 -0.8905 37 1 5.6627 1.4185 1.2771 38 1 5.3416 2.9655 2.0997 39 1 7.5209 3.8419 1.2377 40 1 7.7377 2.4047 2.2681 41 1 9.5645 3.6538 0.2398 42 1 9.9272 2.3387 -0.9629 43 1 9.0911 6.0039 -0.9178 44 1 9.9328 5.2962 -2.3175 45 1 10.8795 11.1000 -3.5464 46 1 5.3779 1.3887 -1.2444 47 1 5.5508 2.9489 -2.0590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221289754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:33 Heat of formation + Delta-G solvation = -50.036928 kcal Electronic energy + Delta-G solvation = -28016.841749 eV Core-core repulsion = 24133.203591 eV Total energy + Delta-G solvation = -3883.638157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21450 -40.91904 -39.17639 -37.39261 -36.07510 -34.67452 -33.17087 -32.01358 -31.77423 -29.91822 -28.89226 -27.83010 -26.52837 -24.73947 -23.79057 -22.76994 -21.66841 -21.43051 -19.89427 -19.06936 -18.16845 -17.83478 -17.57933 -17.18317 -17.07653 -16.82451 -16.59494 -16.08946 -15.94549 -15.71412 -15.42000 -15.20221 -14.92263 -14.78141 -14.42349 -14.30780 -13.66436 -13.52004 -13.40215 -13.33969 -13.25559 -13.13048 -13.00941 -12.77822 -12.72460 -12.59663 -12.46922 -12.25371 -11.94514 -11.85473 -11.66195 -11.43949 -11.28203 -11.17091 -10.62001 -10.53013 -10.08882 -9.62217 -9.00176 -8.99302 -8.51598 -6.22329 0.96496 1.31062 1.44758 1.52414 1.54121 1.67301 2.02157 2.23141 2.25318 2.68629 2.84203 2.86200 3.31697 3.52209 3.78968 3.82678 3.97043 4.04616 4.14065 4.18648 4.20057 4.33033 4.39136 4.41806 4.46754 4.48225 4.49092 4.52023 4.58219 4.71552 4.75730 4.85233 4.93335 4.94658 5.02344 5.04778 5.10258 5.19544 5.23448 5.43310 5.50034 5.70615 5.99778 6.10560 6.18429 6.51935 6.72469 6.93252 7.19753 7.20631 8.60893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002592 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.268589 B =10800.449566 C =11950.333177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.721 5.721 4 C 0.481 3.519 5 O -0.570 6.570 6 C 0.040 3.960 7 N -0.528 5.528 8 C 0.053 3.947 9 C -0.096 4.096 10 C -0.100 4.100 11 H 0.125 0.875 12 C 0.100 3.900 13 N -0.635 5.635 14 C 0.558 3.442 15 O -0.561 6.561 16 C -0.099 4.099 17 S -0.171 6.171 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.045 3.955 21 N -0.916 5.916 22 Si 0.916 3.084 23 H -0.261 1.261 24 H -0.258 1.258 25 H -0.238 1.238 26 C 0.138 3.862 27 H 0.097 0.903 28 C 0.050 3.950 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.277 0.723 46 H 0.069 0.931 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 -23.911 12.396 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.374 5.374 4 C 0.267 3.733 5 O -0.450 6.450 6 C -0.091 4.091 7 N -0.251 5.251 8 C -0.074 4.074 9 C -0.134 4.134 10 C -0.119 4.119 11 H 0.143 0.857 12 C -0.022 4.022 13 N -0.372 5.372 14 C 0.347 3.653 15 O -0.440 6.440 16 C -0.250 4.250 17 S 0.056 5.944 18 C -0.676 4.676 19 H 0.078 0.922 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.738 3.262 23 H -0.185 1.185 24 H -0.182 1.182 25 H -0.162 1.162 26 C 0.035 3.965 27 H 0.115 0.885 28 C -0.078 4.078 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.252 0.748 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.153 -23.512 11.230 31.756 hybrid contribution 0.575 0.132 0.034 0.591 sum -17.578 -23.380 11.265 31.345 Atomic orbital electron populations 1.21953 0.92134 1.04074 1.03237 1.21327 0.96066 0.82710 1.01158 1.46244 1.07019 1.09791 1.74377 1.22434 0.82803 0.93088 0.74985 1.90593 1.55659 1.47699 1.51089 1.22392 0.88330 0.91949 1.06469 1.61045 1.05028 1.56051 1.02945 1.22085 0.95812 0.98837 0.90645 1.21464 0.93983 1.00043 0.97875 1.22976 0.94701 1.01028 0.93176 0.85709 1.23773 0.92064 0.95786 0.90527 1.49950 1.25264 1.14033 1.47911 1.19459 0.86076 0.82063 0.77692 1.90635 1.31375 1.80199 1.41771 1.23153 1.01339 0.96213 1.04307 1.84642 1.31885 1.14376 1.63499 1.22448 1.06866 1.03651 1.34676 0.92229 1.25575 0.98336 0.95197 0.96920 1.70021 1.31646 1.09701 1.44057 0.85846 0.79750 0.80654 0.79979 1.18545 1.18169 1.16247 1.22239 0.91875 0.84659 0.97731 0.88510 1.21373 0.94619 0.98882 0.92966 0.89965 0.91003 0.91471 0.93108 0.92440 0.74833 0.85234 0.87678 0.93082 0.90011 0.92660 0.88347 0.89031 0.87377 0.87981 0.87898 0.91338 0.91378 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 10.03 71.98 0.72 -0.17 16 2 C 0.11 1.31 6.39 86.38 0.55 1.86 16 3 N -0.72 -8.93 5.56 -463.06 -2.57 -11.50 16 4 C 0.48 8.96 7.19 87.66 0.63 9.59 16 5 O -0.57 -14.37 11.81 -3.03 -0.04 -14.41 16 6 C 0.04 0.73 5.82 85.56 0.50 1.22 16 7 N -0.53 -12.65 4.75 -910.24 -4.33 -16.97 16 8 C 0.05 1.04 5.00 86.41 0.43 1.48 16 9 C -0.10 -1.70 5.72 30.66 0.18 -1.52 16 10 C -0.10 -1.71 4.44 -10.27 -0.05 -1.76 16 11 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 12 C 0.10 1.89 7.97 86.45 0.69 2.58 16 13 N -0.64 -18.33 3.37 -820.38 -2.76 -21.09 16 14 C 0.56 21.82 8.00 87.66 0.70 22.52 16 15 O -0.56 -26.11 15.10 -3.05 -0.05 -26.16 16 16 C -0.10 -4.15 5.93 71.24 0.42 -3.72 16 17 S -0.17 -9.06 18.55 -56.49 -1.05 -10.10 16 18 C -0.53 -31.79 10.04 67.95 0.68 -31.11 16 19 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 20 C 0.05 2.71 5.50 84.86 0.47 3.17 16 21 N -0.92 -56.70 13.97 21.65 0.30 -56.39 16 22 Si 0.92 46.01 27.74 68.60 1.90 47.91 16 23 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 26 C 0.14 3.34 4.29 43.92 0.19 3.53 16 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 28 C 0.05 1.35 4.78 85.83 0.41 1.76 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.41 2.78 8.47 -92.71 -0.79 2.00 16 35 H 0.13 1.66 8.00 -2.38 -0.02 1.64 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.10 6.15 -2.39 -0.01 1.09 16 38 H 0.08 1.38 7.97 -2.39 -0.02 1.36 16 39 H 0.05 1.24 7.69 -2.39 -0.02 1.22 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.65 7.95 -2.39 -0.02 1.63 16 42 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.10 4.04 8.14 -2.39 -0.02 4.03 16 44 H 0.10 4.04 8.14 -2.40 -0.02 4.02 16 45 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.07 1.89 5.12 -2.38 -0.01 1.88 16 47 H 0.05 1.83 6.83 -2.39 -0.02 1.81 16 Total: -1.00 -81.92 385.14 -1.91 -83.83 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.15 Total: 15.46 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.52 Total: 9.43 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -9.36 Total: -105.96 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.08 Total: -40.57 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.10 kcal Total: -81.92 -1.91 -83.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221289754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.796 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds