Wall clock time and date at job start Wed Apr 1 2020 00:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81401 * 103.00102 * 2 1 4 4 H 1.09001 * 109.46657 * 55.00145 * 3 2 1 5 5 C 1.52997 * 109.47278 * 295.00295 * 3 2 1 6 6 C 1.50697 * 109.47033 * 175.00167 * 3 2 1 7 7 O 1.21281 * 120.00360 * 25.00165 * 6 3 2 8 8 N 1.34778 * 119.99711 * 205.00488 * 6 3 2 9 9 C 1.47744 * 134.93084 * 359.97438 * 8 6 3 10 10 C 1.54560 * 85.84359 * 154.12627 * 9 8 6 11 11 H 1.09003 * 114.03706 * 138.48920 * 10 9 8 12 12 C 1.51689 * 111.76569 * 267.67756 * 10 9 8 13 13 C 1.51624 * 113.70785 * 125.34309 * 12 10 9 14 14 N 1.46480 * 111.13295 * 312.96977 * 13 12 10 15 15 C 1.46901 * 111.00401 * 189.65383 * 14 13 12 16 16 C 1.50701 * 109.47026 * 67.11650 * 15 14 13 17 17 O 1.21293 * 120.00064 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99959 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00051 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00524 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00373 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99360 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00472 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47131 * 120.00043 * 23 21 19 26 26 H 1.48493 * 109.47340 * 240.00251 * 23 21 19 27 27 C 1.46923 * 110.16620 * 66.29047 * 14 13 12 28 28 C 1.46962 * 134.92370 * 180.02562 * 8 6 3 29 29 H 1.09005 * 112.31221 * 92.67900 * 28 8 6 30 30 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47006 * 299.99709 * 1 2 3 32 32 H 1.09004 * 109.47354 * 59.99811 * 1 2 3 33 33 H 1.09004 * 109.46625 * 300.00080 * 5 3 2 34 34 H 1.09003 * 109.47275 * 59.99472 * 5 3 2 35 35 H 1.09000 * 109.47486 * 180.02562 * 5 3 2 36 36 H 1.09001 * 113.80762 * 39.89870 * 9 8 6 37 37 H 1.09001 * 113.81492 * 268.35914 * 9 8 6 38 38 H 1.08999 * 108.63049 * 4.24996 * 12 10 9 39 39 H 1.09001 * 108.52530 * 246.35782 * 12 10 9 40 40 H 1.09001 * 109.14829 * 192.53832 * 13 12 10 41 41 H 1.08999 * 109.10090 * 73.36492 * 13 12 10 42 42 H 1.08999 * 109.47290 * 187.11973 * 15 14 13 43 43 H 1.09000 * 109.47057 * 307.12005 * 15 14 13 44 44 H 0.97000 * 119.99928 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99689 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.44126 * 175.48114 * 27 14 13 47 47 H 1.09000 * 109.43966 * 55.59178 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7427 2.4016 -1.3073 6 6 3.7142 1.9385 0.1238 7 8 4.4584 1.0531 -0.2410 8 7 4.2216 3.0755 0.6399 9 6 3.6459 4.3282 1.1711 10 6 4.9459 4.4423 1.9993 11 1 5.3567 5.4509 2.0441 12 6 4.7965 3.8112 3.3706 13 6 5.8485 2.7633 3.6773 14 7 6.0087 1.8322 2.5579 15 6 6.8529 0.6917 2.9383 16 6 6.1361 -0.1422 3.9688 17 8 5.0305 0.1814 4.3486 18 7 6.7235 -1.2476 4.4683 19 6 6.0717 -2.0059 5.4061 20 1 5.0873 -1.7178 5.7444 21 6 6.6775 -3.1453 5.9215 22 7 7.8755 -3.4955 5.5104 23 14 5.7897 -4.1782 7.1999 24 1 4.4651 -3.5736 7.4917 25 1 5.6005 -5.5558 6.6787 26 1 6.5974 -4.2266 8.4450 27 6 6.5640 2.5327 1.3919 28 6 5.5758 3.5807 0.9056 29 1 5.9685 4.1682 0.0756 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 2.2353 1.9149 -2.1491 34 1 0.6635 2.2779 -1.3969 35 1 1.9883 3.4636 -1.3075 36 1 2.7509 4.1796 1.7753 37 1 3.5309 5.1119 0.4224 38 1 3.8127 3.3463 3.4346 39 1 4.8588 4.5979 4.1225 40 1 5.5502 2.2065 4.5657 41 1 6.8003 3.2588 3.8691 42 1 7.0595 0.0831 2.0580 43 1 7.7911 1.0574 3.3555 44 1 7.6078 -1.5061 4.1648 45 1 8.2986 -4.2907 5.8704 46 1 6.7532 1.8149 0.5937 47 1 7.4990 3.0180 1.6718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221302564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:14 Heat of formation + Delta-G solvation = -16.474201 kcal Electronic energy + Delta-G solvation = -28925.032588 eV Core-core repulsion = 25042.849820 eV Total energy + Delta-G solvation = -3882.182768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07127 -38.56141 -37.89936 -35.86092 -33.74010 -33.36867 -31.99948 -31.08623 -29.61938 -28.82357 -28.33859 -25.82715 -24.88873 -23.99898 -23.28514 -21.85912 -20.18379 -19.09342 -18.01683 -17.76573 -17.12423 -16.67044 -16.40333 -15.73465 -15.36659 -14.92027 -14.68593 -14.55332 -14.35404 -14.19857 -13.91384 -13.88468 -13.57651 -13.49669 -13.13964 -13.02165 -12.84669 -12.50475 -12.35080 -12.21791 -12.04229 -11.88879 -11.79648 -11.47509 -11.41205 -11.26885 -11.04300 -10.92121 -10.35966 -10.30876 -10.26220 -10.12420 -9.77823 -9.45075 -9.37321 -8.59537 -8.27152 -7.85408 -7.70475 -7.55228 -6.31454 -3.71410 1.47869 2.54967 2.81096 2.91457 3.23124 3.32735 3.40202 3.98424 4.04556 4.19456 4.24251 4.34960 4.64193 4.73369 4.86155 4.91575 5.02050 5.04089 5.08928 5.18703 5.21732 5.23876 5.27422 5.30198 5.35503 5.39476 5.51686 5.57798 5.63373 5.65839 5.79451 5.85944 5.86491 5.94208 6.00273 6.09086 6.15158 6.39233 6.44444 6.54133 7.42954 7.53920 7.65157 7.80728 8.17764 8.34900 8.73726 9.29202 9.66712 10.19113 10.86794 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.003670 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.167602 B = 7627.406811 C = 9301.492666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.175 6.175 3 C -0.088 4.088 4 H 0.101 0.899 5 C -0.138 4.138 6 C 0.569 3.431 7 O -0.508 6.508 8 N -0.622 5.622 9 C 0.099 3.901 10 C -0.113 4.113 11 H 0.089 0.911 12 C -0.091 4.091 13 C 0.054 3.946 14 N -0.496 5.496 15 C 0.049 3.951 16 C 0.449 3.551 17 O -0.575 6.575 18 N -0.567 5.567 19 C -0.294 4.294 20 H 0.102 0.898 21 C 0.020 3.980 22 N -0.904 5.904 23 Si 0.928 3.072 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.049 3.951 28 C 0.150 3.850 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.018 0.982 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.391 0.609 45 H 0.269 0.731 46 H 0.087 0.913 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 18.894 -12.006 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.051 5.949 3 C -0.220 4.220 4 H 0.119 0.881 5 C -0.197 4.197 6 C 0.356 3.644 7 O -0.382 6.382 8 N -0.359 5.359 9 C -0.024 4.024 10 C -0.132 4.132 11 H 0.107 0.893 12 C -0.129 4.129 13 C -0.074 4.074 14 N -0.220 5.220 15 C -0.082 4.082 16 C 0.234 3.766 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.423 4.423 20 H 0.120 0.880 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.080 4.080 28 C 0.047 3.953 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.036 0.964 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.224 0.776 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.651 17.177 -12.097 22.721 hybrid contribution 0.036 0.647 0.649 0.917 sum -8.615 17.824 -11.448 22.868 Atomic orbital electron populations 1.23544 0.96545 1.06578 1.04463 1.87791 1.03873 1.05506 1.97724 1.23217 0.97658 0.98557 1.02573 0.88124 1.21961 1.01656 1.00683 0.95386 1.18934 0.88098 0.80890 0.76463 1.90732 1.60103 1.39569 1.47786 1.49523 1.08797 1.14717 1.62892 1.23562 0.97900 0.85411 0.95555 1.22653 0.95935 0.99255 0.95338 0.89262 1.20763 1.01170 0.97259 0.93670 1.21823 0.96369 0.93293 0.95875 1.61475 1.48290 1.07567 1.04697 1.21815 0.93888 0.93087 0.99405 1.19714 0.87721 0.83661 0.85465 1.90479 1.20529 1.71807 1.63051 1.41857 1.18578 1.22344 1.37624 1.19724 1.02184 1.04481 1.15935 0.87971 1.25235 0.96046 0.97749 0.99032 1.69628 1.14213 1.26502 1.44205 0.85825 0.79398 0.79415 0.79845 1.19286 1.20802 1.20889 1.22002 0.94446 0.96423 0.95145 1.22254 0.84875 0.92841 0.95349 0.89178 0.87860 0.90648 0.90790 0.90743 0.91543 0.91664 0.90045 0.89947 0.91082 0.91632 0.88075 0.96368 0.89334 0.93768 0.77579 0.92068 0.89466 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.45 101.05 1.06 -0.38 16 2 S -0.17 -2.68 21.10 -107.50 -2.27 -4.95 16 3 C -0.09 -1.13 2.98 -27.89 -0.08 -1.22 16 4 H 0.10 1.17 7.90 -51.92 -0.41 0.76 16 5 C -0.14 -1.28 9.08 37.16 0.34 -0.94 16 6 C 0.57 8.98 7.10 -10.99 -0.08 8.90 16 7 O -0.51 -10.21 15.87 5.56 0.09 -10.12 16 8 N -0.62 -7.92 3.30 -172.86 -0.57 -8.49 16 9 C 0.10 0.84 7.93 -2.92 -0.02 0.82 16 10 C -0.11 -1.06 4.38 -90.62 -0.40 -1.46 16 11 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.09 -1.12 5.75 -28.09 -0.16 -1.28 16 13 C 0.05 0.87 5.04 -4.75 -0.02 0.85 16 14 N -0.50 -8.81 4.29 -237.90 -1.02 -9.83 16 15 C 0.05 0.97 5.44 -4.97 -0.03 0.94 16 16 C 0.45 11.22 7.41 -10.98 -0.08 11.13 16 17 O -0.57 -16.03 14.05 5.55 0.08 -15.95 16 18 N -0.57 -15.13 5.29 -10.96 -0.06 -15.19 16 19 C -0.29 -8.50 9.68 -14.94 -0.14 -8.64 16 20 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.53 13.05 55.50 0.72 -24.81 16 23 Si 0.93 21.81 29.55 -169.99 -5.02 16.78 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.05 0.69 4.84 -4.30 -0.02 0.67 16 28 C 0.15 1.72 4.44 -68.65 -0.30 1.42 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.07 0.59 7.14 -51.92 -0.37 0.22 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.66 7.57 -51.93 -0.39 0.27 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 1.01 7.36 -51.93 -0.38 0.63 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 2.02 5.84 -51.93 -0.30 1.72 16 41 H 0.02 0.27 8.03 -51.93 -0.42 -0.15 16 42 H 0.09 1.73 7.96 -51.93 -0.41 1.31 16 43 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.39 10.07 7.90 -40.82 -0.32 9.75 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.09 1.39 7.44 -51.93 -0.39 1.01 16 47 H 0.04 0.51 8.04 -51.93 -0.42 0.10 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -36.01 388.67 -9.73 -45.74 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.49 Total: 9.67 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.05 Total: 11.28 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.92 Total: -58.32 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: 0.17 Total: -26.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.27 Total: -4.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.01 -9.73 -45.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221302564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.268 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds