Wall clock time and date at job start Wed Apr 1 2020 00:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81401 * 103.00102 * 2 1 4 4 H 1.09001 * 109.46657 * 55.00145 * 3 2 1 5 5 C 1.52997 * 109.47278 * 295.00295 * 3 2 1 6 6 C 1.50697 * 109.47033 * 175.00167 * 3 2 1 7 7 O 1.21281 * 120.00360 * 25.00165 * 6 3 2 8 8 N 1.34778 * 119.99711 * 205.00488 * 6 3 2 9 9 C 1.47744 * 134.93084 * 359.97438 * 8 6 3 10 10 C 1.54560 * 85.84359 * 154.12627 * 9 8 6 11 11 H 1.09003 * 114.03706 * 138.48920 * 10 9 8 12 12 C 1.51689 * 111.76569 * 267.67756 * 10 9 8 13 13 C 1.51624 * 113.70785 * 125.34309 * 12 10 9 14 14 N 1.46480 * 111.13295 * 312.96977 * 13 12 10 15 15 C 1.46901 * 111.00401 * 189.65383 * 14 13 12 16 16 C 1.50701 * 109.47026 * 67.11650 * 15 14 13 17 17 O 1.21293 * 120.00064 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99959 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00051 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00524 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00373 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99360 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00472 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46945 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47131 * 120.00043 * 23 21 19 26 26 H 1.48493 * 109.47340 * 240.00251 * 23 21 19 27 27 C 1.46923 * 110.16620 * 66.29047 * 14 13 12 28 28 C 1.46962 * 134.92370 * 180.02562 * 8 6 3 29 29 H 1.09005 * 112.31221 * 92.67900 * 28 8 6 30 30 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47006 * 299.99709 * 1 2 3 32 32 H 1.09004 * 109.47354 * 59.99811 * 1 2 3 33 33 H 1.09004 * 109.46625 * 300.00080 * 5 3 2 34 34 H 1.09003 * 109.47275 * 59.99472 * 5 3 2 35 35 H 1.09000 * 109.47486 * 180.02562 * 5 3 2 36 36 H 1.09001 * 113.80762 * 39.89870 * 9 8 6 37 37 H 1.09001 * 113.81492 * 268.35914 * 9 8 6 38 38 H 1.08999 * 108.63049 * 4.24996 * 12 10 9 39 39 H 1.09001 * 108.52530 * 246.35782 * 12 10 9 40 40 H 1.09001 * 109.14829 * 192.53832 * 13 12 10 41 41 H 1.08999 * 109.10090 * 73.36492 * 13 12 10 42 42 H 1.08999 * 109.47290 * 187.11973 * 15 14 13 43 43 H 1.09000 * 109.47057 * 307.12005 * 15 14 13 44 44 H 0.97000 * 119.99928 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99689 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.44126 * 175.48114 * 27 14 13 47 47 H 1.09000 * 109.43966 * 55.59178 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7427 2.4016 -1.3073 6 6 3.7142 1.9385 0.1238 7 8 4.4584 1.0531 -0.2410 8 7 4.2216 3.0755 0.6399 9 6 3.6459 4.3282 1.1711 10 6 4.9459 4.4423 1.9993 11 1 5.3567 5.4509 2.0441 12 6 4.7965 3.8112 3.3706 13 6 5.8485 2.7633 3.6773 14 7 6.0087 1.8322 2.5579 15 6 6.8529 0.6917 2.9383 16 6 6.1361 -0.1422 3.9688 17 8 5.0305 0.1814 4.3486 18 7 6.7235 -1.2476 4.4683 19 6 6.0717 -2.0059 5.4061 20 1 5.0873 -1.7178 5.7444 21 6 6.6775 -3.1453 5.9215 22 7 7.8755 -3.4955 5.5104 23 14 5.7897 -4.1782 7.1999 24 1 4.4651 -3.5736 7.4917 25 1 5.6005 -5.5558 6.6787 26 1 6.5974 -4.2266 8.4450 27 6 6.5640 2.5327 1.3919 28 6 5.5758 3.5807 0.9056 29 1 5.9685 4.1682 0.0756 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 2.2353 1.9149 -2.1491 34 1 0.6635 2.2779 -1.3969 35 1 1.9883 3.4636 -1.3075 36 1 2.7509 4.1796 1.7753 37 1 3.5309 5.1119 0.4224 38 1 3.8127 3.3463 3.4346 39 1 4.8588 4.5979 4.1225 40 1 5.5502 2.2065 4.5657 41 1 6.8003 3.2588 3.8691 42 1 7.0595 0.0831 2.0580 43 1 7.7911 1.0574 3.3555 44 1 7.6078 -1.5061 4.1648 45 1 8.2986 -4.2907 5.8704 46 1 6.7532 1.8149 0.5937 47 1 7.4990 3.0180 1.6718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221302564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:13 Heat of formation + Delta-G solvation = -43.720807 kcal Electronic energy + Delta-G solvation = -28926.214090 eV Core-core repulsion = 25042.849820 eV Total energy + Delta-G solvation = -3883.364270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04079 -40.26964 -39.27116 -37.26371 -35.84692 -34.35424 -33.36667 -32.94449 -30.74566 -29.79508 -29.45345 -27.41645 -25.86713 -25.65057 -24.29786 -22.94848 -21.27024 -20.99434 -19.90315 -19.02666 -18.20380 -17.80674 -17.65622 -17.26137 -16.57749 -16.43424 -16.36530 -15.96146 -15.64450 -15.46244 -15.25872 -15.11286 -14.82082 -14.56500 -14.32415 -14.22568 -13.84626 -13.70650 -13.56538 -13.31734 -13.22400 -13.14388 -13.01310 -12.85697 -12.79521 -12.62924 -12.42300 -12.35746 -12.13424 -12.03326 -11.59885 -11.36505 -11.30696 -10.78516 -10.54187 -10.27752 -10.00714 -9.51500 -9.10638 -8.73119 -8.47357 -5.96142 0.48350 1.34577 1.38433 1.53669 1.60950 1.82006 1.92758 2.04140 2.27127 2.75306 3.18836 3.28611 3.34519 3.44089 3.79004 3.87525 3.95954 4.04856 4.10747 4.22250 4.29464 4.31265 4.33916 4.35124 4.45357 4.50465 4.55456 4.58224 4.60715 4.64847 4.67936 4.73788 4.83510 4.85944 4.96922 5.06171 5.07884 5.14791 5.29463 5.39007 5.46580 5.90357 6.12185 6.31020 6.59588 6.83636 7.11816 7.27129 7.54622 8.10875 8.70866 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.003670 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.167602 B = 7627.406811 C = 9301.492666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.293 6.293 3 C -0.066 4.066 4 H 0.112 0.888 5 C -0.128 4.128 6 C 0.553 3.447 7 O -0.569 6.569 8 N -0.630 5.630 9 C 0.105 3.895 10 C -0.101 4.101 11 H 0.137 0.863 12 C -0.087 4.087 13 C 0.055 3.945 14 N -0.519 5.519 15 C 0.062 3.938 16 C 0.445 3.555 17 O -0.608 6.608 18 N -0.577 5.577 19 C -0.330 4.330 20 H 0.077 0.923 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.267 1.267 27 C 0.048 3.952 28 C 0.141 3.859 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.393 0.607 45 H 0.277 0.723 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 22.257 -12.485 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.068 6.068 3 C -0.197 4.197 4 H 0.130 0.870 5 C -0.187 4.187 6 C 0.341 3.659 7 O -0.448 6.448 8 N -0.365 5.365 9 C -0.016 4.016 10 C -0.120 4.120 11 H 0.155 0.845 12 C -0.125 4.125 13 C -0.073 4.073 14 N -0.243 5.243 15 C -0.069 4.069 16 C 0.232 3.768 17 O -0.494 6.494 18 N -0.215 5.215 19 C -0.459 4.459 20 H 0.095 0.905 21 C -0.215 4.215 22 N -0.565 5.565 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.192 1.192 27 C -0.080 4.080 28 C 0.038 3.962 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.227 0.773 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.514 20.606 -12.573 25.946 hybrid contribution 0.323 -0.349 0.821 0.948 sum -9.191 20.257 -11.752 25.158 Atomic orbital electron populations 1.23522 0.91017 1.07495 1.06206 1.88141 1.10187 1.10446 1.98056 1.23174 0.96081 0.95552 1.04922 0.87008 1.21928 1.02697 1.01493 0.92532 1.19504 0.89058 0.81180 0.76118 1.90695 1.61564 1.41845 1.50671 1.49796 1.10295 1.15161 1.61248 1.23900 0.97457 0.84084 0.96152 1.22598 0.96396 1.00444 0.92524 0.84538 1.20749 0.98084 0.96716 0.96938 1.21763 0.98473 0.93406 0.93636 1.61434 1.48678 1.07938 1.06298 1.21609 0.94368 0.93559 0.97360 1.20670 0.87440 0.83250 0.85446 1.90446 1.22196 1.72539 1.64222 1.41938 1.18707 1.22946 1.37859 1.19678 1.02021 1.06264 1.17962 0.90460 1.26078 0.96739 0.98113 1.00525 1.69696 1.15006 1.26969 1.44798 0.84851 0.78053 0.77661 0.77621 1.19780 1.19718 1.19158 1.22055 0.96584 0.96555 0.92772 1.22629 0.83894 0.92321 0.97393 0.85499 0.87400 0.89643 0.88101 0.92407 0.89330 0.88989 0.89751 0.85456 0.93804 0.88884 0.92981 0.94503 0.89700 0.91499 0.77327 0.91338 0.92093 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.45 113.37 1.18 -1.01 16 2 S -0.29 -9.46 21.10 -56.49 -1.19 -10.65 16 3 C -0.07 -1.66 2.98 29.85 0.09 -1.57 16 4 H 0.11 2.48 7.90 -2.39 -0.02 2.46 16 5 C -0.13 -2.10 9.08 71.98 0.65 -1.45 16 6 C 0.55 17.60 7.10 87.66 0.62 18.22 16 7 O -0.57 -24.21 15.87 -3.03 -0.05 -24.26 16 8 N -0.63 -14.78 3.30 -819.20 -2.70 -17.48 16 9 C 0.11 1.31 7.93 86.42 0.69 2.00 16 10 C -0.10 -1.45 4.38 -10.73 -0.05 -1.49 16 11 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 12 C -0.09 -1.97 5.75 29.71 0.17 -1.80 16 13 C 0.05 1.77 5.04 85.93 0.43 2.20 16 14 N -0.52 -18.78 4.29 -906.57 -3.89 -22.66 16 15 C 0.06 2.57 5.44 85.56 0.47 3.04 16 16 C 0.44 23.57 7.41 87.66 0.65 24.22 16 17 O -0.61 -36.22 14.05 -3.07 -0.04 -36.27 16 18 N -0.58 -32.49 5.29 -306.98 -1.62 -34.11 16 19 C -0.33 -20.02 9.68 84.04 0.81 -19.21 16 20 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 22 N -0.92 -52.85 13.05 21.66 0.28 -52.56 16 23 Si 0.99 45.35 29.55 68.60 2.03 47.37 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 C 0.05 1.33 4.84 85.98 0.42 1.75 16 28 C 0.14 2.78 4.44 44.28 0.20 2.98 16 29 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 1.38 7.14 -2.39 -0.02 1.36 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.06 6.92 -2.39 -0.02 1.04 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.06 7.57 -2.39 -0.02 1.04 16 37 H 0.13 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.04 1.22 7.36 -2.39 -0.02 1.21 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 2.19 5.84 -2.39 -0.01 2.17 16 41 H 0.04 1.02 8.03 -2.39 -0.02 1.00 16 42 H 0.08 3.52 7.96 -2.39 -0.02 3.50 16 43 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 44 H 0.39 21.29 7.90 -92.71 -0.73 20.56 16 45 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.06 2.00 7.44 -2.39 -0.02 1.99 16 47 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 Total: -1.00 -87.50 388.67 -0.14 -87.64 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.25 Total: 35.51 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 6.80 Total: 27.47 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -7.93 Total: -126.82 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.09 Total: -60.52 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.19 Total: -10.65 kcal Total: -87.50 -0.14 -87.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221302564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.919 kcal (2) G-P(sol) polarization free energy of solvation -87.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds