Wall clock time and date at job start Wed Apr 1 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 102.99971 * 2 1 4 4 H 1.09001 * 109.47190 * 304.99672 * 3 2 1 5 5 C 1.53000 * 109.47309 * 64.99916 * 3 2 1 6 6 C 1.50703 * 109.47147 * 184.99789 * 3 2 1 7 7 O 1.21277 * 120.00055 * 340.00251 * 6 3 2 8 8 N 1.34784 * 119.99848 * 160.00135 * 6 3 2 9 9 C 1.47208 * 136.38184 * 0.02562 * 8 6 3 10 10 C 1.53903 * 87.74315 * 152.01802 * 9 8 6 11 11 H 1.09004 * 115.07732 * 141.24672 * 10 9 8 12 12 C 1.53159 * 111.74574 * 274.09307 * 10 9 8 13 13 C 1.51731 * 109.35240 * 139.09466 * 12 10 9 14 14 N 1.46402 * 108.90010 * 297.63380 * 13 12 10 15 15 C 1.46897 * 111.00006 * 190.31693 * 14 13 12 16 16 C 1.50701 * 109.47059 * 63.26484 * 15 14 13 17 17 O 1.21296 * 120.00076 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00177 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99810 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00133 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00001 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47173 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47190 * 119.99995 * 23 21 19 26 26 H 1.48499 * 109.47172 * 239.99965 * 23 21 19 27 27 C 1.45490 * 113.13295 * 64.76203 * 14 13 12 28 28 C 1.46625 * 136.37911 * 179.63017 * 8 6 3 29 29 H 1.09005 * 111.73241 * 95.34636 * 28 8 6 30 30 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47394 * 299.99966 * 1 2 3 32 32 H 1.09003 * 109.47221 * 60.00026 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99758 * 5 3 2 34 34 H 1.09002 * 109.47398 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.46968 * 299.99957 * 5 3 2 36 36 H 1.09002 * 113.50799 * 266.73998 * 9 8 6 37 37 H 1.08999 * 113.50965 * 37.29527 * 9 8 6 38 38 H 1.09000 * 109.58139 * 258.80877 * 12 10 9 39 39 H 1.09000 * 109.58167 * 19.21719 * 12 10 9 40 40 H 1.08993 * 109.73448 * 177.72753 * 13 12 10 41 41 H 1.09003 * 109.54498 * 57.42449 * 13 12 10 42 42 H 1.08996 * 109.46878 * 183.26310 * 15 14 13 43 43 H 1.08992 * 109.46940 * 303.26515 * 15 14 13 44 44 H 0.97003 * 119.99574 * 359.97438 * 18 16 15 45 45 H 0.96999 * 119.99744 * 179.97438 * 22 21 19 46 46 H 1.09000 * 108.57964 * 189.34723 * 27 14 13 47 47 H 1.09004 * 108.57554 * 71.68323 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7427 2.4016 1.3073 6 6 3.7141 1.9386 -0.1238 7 8 4.4551 1.0200 0.1556 8 7 4.2252 3.1125 -0.5450 9 6 3.6906 4.4183 -0.9645 10 6 5.0070 5.0466 -0.4736 11 1 5.3953 5.8520 -1.0971 12 6 4.9589 5.3682 1.0231 13 6 6.2880 5.0050 1.6584 14 7 6.5040 3.5640 1.5154 15 6 7.6497 3.1210 2.3209 16 6 7.3583 3.3558 3.7807 17 8 6.3004 3.8447 4.1170 18 7 8.2736 3.0236 4.7126 19 6 8.0087 3.2378 6.0406 20 1 7.0664 3.6723 6.3400 21 6 8.9521 2.8948 7.0013 22 7 10.0985 2.3656 6.6370 23 14 8.5909 3.1859 8.8107 24 1 7.2415 3.7887 8.9554 25 1 8.6365 1.8926 9.5390 26 1 9.6078 4.1085 9.3763 27 6 6.6460 3.1420 0.1304 28 6 5.5630 3.6631 -0.7839 29 1 5.8568 3.5702 -1.8295 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2353 1.9150 2.1492 34 1 1.9883 3.4636 1.3075 35 1 0.6635 2.2779 1.3969 36 1 3.5437 4.5024 -2.0413 37 1 2.8181 4.7349 -0.3930 38 1 4.7734 6.4332 1.1622 39 1 4.1630 4.7920 1.4951 40 1 6.2748 5.2686 2.7159 41 1 7.0913 5.5456 1.1578 42 1 7.8237 2.0584 2.1515 43 1 8.5366 3.6849 2.0321 44 1 9.1198 2.6330 4.4436 45 1 10.7572 2.1265 7.3077 46 1 6.6351 2.0526 0.0964 47 1 7.6106 3.4882 -0.2410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221302567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:16 Heat of formation + Delta-G solvation = -13.677392 kcal Electronic energy + Delta-G solvation = -28670.773940 eV Core-core repulsion = 24788.712451 eV Total energy + Delta-G solvation = -3882.061489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32042 -38.69526 -38.04051 -35.98284 -33.80689 -33.44453 -32.02942 -31.14123 -29.68984 -28.97915 -28.44776 -25.86326 -24.83563 -23.99226 -23.47675 -21.76294 -20.39795 -19.15954 -18.10506 -17.82456 -17.26518 -16.80197 -16.37797 -15.73360 -15.51478 -15.02445 -14.89401 -14.54222 -14.53505 -14.07830 -13.96296 -13.93288 -13.70922 -13.60593 -13.36754 -12.97825 -12.88445 -12.52369 -12.37755 -12.28693 -12.10827 -11.97582 -11.83180 -11.50228 -11.45274 -11.28270 -11.05821 -10.97666 -10.48841 -10.29971 -10.22370 -10.16746 -9.98726 -9.59660 -9.41617 -8.73556 -8.29976 -7.90786 -7.79401 -7.65575 -6.36477 -3.76936 1.29113 2.34319 2.66191 2.78752 3.19754 3.29856 3.36963 3.92464 3.97529 4.14436 4.17923 4.30557 4.58228 4.69202 4.79337 4.82666 4.87712 4.91305 5.00638 5.12711 5.14982 5.20376 5.27101 5.30912 5.33061 5.41821 5.46236 5.53608 5.56889 5.63493 5.82284 5.84708 5.92435 5.98789 6.02305 6.07056 6.14536 6.35594 6.48426 6.56065 7.42604 7.59948 7.63134 7.71625 8.12510 8.17724 8.67840 9.23630 9.60797 10.12648 10.81533 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.003018 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.930930 B = 9275.518543 C =10503.510331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.188 6.188 3 C -0.083 4.083 4 H 0.100 0.900 5 C -0.140 4.140 6 C 0.570 3.430 7 O -0.506 6.506 8 N -0.630 5.630 9 C 0.097 3.903 10 C -0.120 4.120 11 H 0.100 0.900 12 C -0.091 4.091 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.053 3.947 16 C 0.447 3.553 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.056 3.944 28 C 0.147 3.853 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.019 0.981 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.089 0.911 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 4.371 -19.391 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.038 5.962 3 C -0.215 4.215 4 H 0.118 0.882 5 C -0.199 4.199 6 C 0.357 3.643 7 O -0.380 6.380 8 N -0.368 5.368 9 C -0.026 4.026 10 C -0.139 4.139 11 H 0.119 0.881 12 C -0.128 4.128 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.078 4.078 16 C 0.233 3.767 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.073 4.073 28 C 0.044 3.956 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.494 2.784 -18.649 23.782 hybrid contribution 0.254 1.233 0.235 1.280 sum -14.240 4.017 -18.414 23.622 Atomic orbital electron populations 1.23538 0.95986 1.06570 1.04774 1.87492 1.04503 1.06374 1.97837 1.23250 0.97178 0.97896 1.03199 0.88191 1.21971 1.01339 1.01416 0.95218 1.18937 0.88195 0.80340 0.76843 1.90756 1.60236 1.38804 1.48188 1.49261 1.09745 1.11650 1.66099 1.23262 0.98221 0.81301 0.99819 1.22930 0.96004 0.96096 0.98901 0.88144 1.21137 0.99541 1.00753 0.91409 1.21907 0.94920 0.86738 1.03694 1.60043 1.41304 1.15096 1.07626 1.21752 0.91172 1.01255 0.93612 1.19722 0.85780 0.84749 0.86479 1.90454 1.25528 1.48525 1.81636 1.41875 1.16860 1.55344 1.06100 1.19731 1.03230 1.38562 0.81042 0.87911 1.25252 0.95172 0.97076 1.00531 1.69625 1.07007 1.42830 1.34919 0.85814 0.78559 0.77947 0.82095 1.19254 1.20765 1.20843 1.21392 0.95422 1.02199 0.88238 1.21949 0.84529 0.90576 0.98582 0.89345 0.87856 0.90324 0.90780 0.90046 0.91139 0.91652 0.89842 0.90244 0.91294 0.90565 0.87233 0.96311 0.89449 0.93687 0.77510 0.91985 0.89261 0.94948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 10.45 101.05 1.06 -0.04 16 2 S -0.19 -2.37 21.04 -107.50 -2.26 -4.63 16 3 C -0.08 -0.97 3.02 -27.88 -0.08 -1.05 16 4 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 5 C -0.14 -1.53 9.08 37.16 0.34 -1.20 16 6 C 0.57 8.45 7.18 -10.98 -0.08 8.38 16 7 O -0.51 -9.78 15.44 5.56 0.09 -9.69 16 8 N -0.63 -7.63 3.37 -184.96 -0.62 -8.25 16 9 C 0.10 0.77 7.78 -10.52 -0.08 0.69 16 10 C -0.12 -1.10 4.63 -90.42 -0.42 -1.52 16 11 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.09 -1.12 5.65 -27.29 -0.15 -1.27 16 13 C 0.05 0.87 5.05 -4.74 -0.02 0.85 16 14 N -0.52 -9.06 4.34 -239.77 -1.04 -10.10 16 15 C 0.05 1.02 5.43 -4.98 -0.03 0.99 16 16 C 0.45 10.87 7.41 -10.98 -0.08 10.78 16 17 O -0.58 -15.63 13.73 5.54 0.08 -15.56 16 18 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 19 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 23 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.06 0.82 4.99 -5.59 -0.03 0.79 16 28 C 0.15 1.67 4.09 -76.56 -0.31 1.36 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.56 7.14 -51.93 -0.37 0.19 16 32 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 35 H 0.06 0.56 6.92 -51.93 -0.36 0.20 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.56 7.58 -51.93 -0.39 0.16 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 40 H 0.11 2.18 5.51 -51.93 -0.29 1.89 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.09 1.51 7.00 -51.93 -0.36 1.14 16 47 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -34.88 387.55 -9.89 -44.77 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.47 Total: 9.70 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.14 Total: 10.69 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -1.00 Total: -57.53 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.16 Total: -25.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.26 Total: -4.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.88 -9.89 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221302567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.089 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds