Wall clock time and date at job start Wed Apr 1 2020 00:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 102.99971 * 2 1 4 4 H 1.09001 * 109.47190 * 304.99672 * 3 2 1 5 5 C 1.53000 * 109.47309 * 64.99916 * 3 2 1 6 6 C 1.50703 * 109.47147 * 184.99789 * 3 2 1 7 7 O 1.21277 * 120.00055 * 340.00251 * 6 3 2 8 8 N 1.34784 * 119.99848 * 160.00135 * 6 3 2 9 9 C 1.47208 * 136.38184 * 0.02562 * 8 6 3 10 10 C 1.53903 * 87.74315 * 152.01802 * 9 8 6 11 11 H 1.09004 * 115.07732 * 141.24672 * 10 9 8 12 12 C 1.53159 * 111.74574 * 274.09307 * 10 9 8 13 13 C 1.51731 * 109.35240 * 139.09466 * 12 10 9 14 14 N 1.46402 * 108.90010 * 297.63380 * 13 12 10 15 15 C 1.46897 * 111.00006 * 190.31693 * 14 13 12 16 16 C 1.50701 * 109.47059 * 63.26484 * 15 14 13 17 17 O 1.21296 * 120.00076 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00177 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99810 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00133 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00001 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47173 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47190 * 119.99995 * 23 21 19 26 26 H 1.48499 * 109.47172 * 239.99965 * 23 21 19 27 27 C 1.45490 * 113.13295 * 64.76203 * 14 13 12 28 28 C 1.46625 * 136.37911 * 179.63017 * 8 6 3 29 29 H 1.09005 * 111.73241 * 95.34636 * 28 8 6 30 30 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47394 * 299.99966 * 1 2 3 32 32 H 1.09003 * 109.47221 * 60.00026 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99758 * 5 3 2 34 34 H 1.09002 * 109.47398 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.46968 * 299.99957 * 5 3 2 36 36 H 1.09002 * 113.50799 * 266.73998 * 9 8 6 37 37 H 1.08999 * 113.50965 * 37.29527 * 9 8 6 38 38 H 1.09000 * 109.58139 * 258.80877 * 12 10 9 39 39 H 1.09000 * 109.58167 * 19.21719 * 12 10 9 40 40 H 1.08993 * 109.73448 * 177.72753 * 13 12 10 41 41 H 1.09003 * 109.54498 * 57.42449 * 13 12 10 42 42 H 1.08996 * 109.46878 * 183.26310 * 15 14 13 43 43 H 1.08992 * 109.46940 * 303.26515 * 15 14 13 44 44 H 0.97003 * 119.99574 * 359.97438 * 18 16 15 45 45 H 0.96999 * 119.99744 * 179.97438 * 22 21 19 46 46 H 1.09000 * 108.57964 * 189.34723 * 27 14 13 47 47 H 1.09004 * 108.57554 * 71.68323 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7427 2.4016 1.3073 6 6 3.7141 1.9386 -0.1238 7 8 4.4551 1.0200 0.1556 8 7 4.2252 3.1125 -0.5450 9 6 3.6906 4.4183 -0.9645 10 6 5.0070 5.0466 -0.4736 11 1 5.3953 5.8520 -1.0971 12 6 4.9589 5.3682 1.0231 13 6 6.2880 5.0050 1.6584 14 7 6.5040 3.5640 1.5154 15 6 7.6497 3.1210 2.3209 16 6 7.3583 3.3558 3.7807 17 8 6.3004 3.8447 4.1170 18 7 8.2736 3.0236 4.7126 19 6 8.0087 3.2378 6.0406 20 1 7.0664 3.6723 6.3400 21 6 8.9521 2.8948 7.0013 22 7 10.0985 2.3656 6.6370 23 14 8.5909 3.1859 8.8107 24 1 7.2415 3.7887 8.9554 25 1 8.6365 1.8926 9.5390 26 1 9.6078 4.1085 9.3763 27 6 6.6460 3.1420 0.1304 28 6 5.5630 3.6631 -0.7839 29 1 5.8568 3.5702 -1.8295 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2353 1.9150 2.1492 34 1 1.9883 3.4636 1.3075 35 1 0.6635 2.2779 1.3969 36 1 3.5437 4.5024 -2.0413 37 1 2.8181 4.7349 -0.3930 38 1 4.7734 6.4332 1.1622 39 1 4.1630 4.7920 1.4951 40 1 6.2748 5.2686 2.7159 41 1 7.0913 5.5456 1.1578 42 1 7.8237 2.0584 2.1515 43 1 8.5366 3.6849 2.0321 44 1 9.1198 2.6330 4.4436 45 1 10.7572 2.1265 7.3077 46 1 6.6351 2.0526 0.0964 47 1 7.6106 3.4882 -0.2410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221302567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:15 Heat of formation + Delta-G solvation = -39.825976 kcal Electronic energy + Delta-G solvation = -28671.907828 eV Core-core repulsion = 24788.712451 eV Total energy + Delta-G solvation = -3883.195377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25332 -40.33993 -39.37732 -37.38062 -35.86322 -34.43158 -33.39533 -32.95183 -30.79538 -29.81345 -29.47864 -27.44031 -25.81994 -25.63324 -24.50334 -22.79169 -21.41626 -21.05198 -19.90558 -19.10067 -18.26820 -17.85569 -17.66394 -17.19796 -16.55972 -16.48929 -16.39810 -16.10825 -15.72524 -15.41858 -15.24607 -15.16864 -14.86767 -14.57498 -14.34495 -14.27799 -13.79786 -13.76981 -13.55382 -13.37803 -13.23266 -13.10133 -13.01349 -12.95260 -12.85000 -12.69524 -12.42437 -12.34975 -12.13202 -12.03341 -11.72393 -11.39444 -11.18143 -10.82421 -10.65825 -10.26110 -10.01090 -9.61550 -9.03987 -8.74753 -8.47855 -5.96857 0.44782 1.34914 1.39420 1.54311 1.55014 1.69453 1.89791 2.02478 2.26634 2.71439 3.18393 3.26513 3.33120 3.41459 3.73950 3.84961 3.92400 3.98419 4.09794 4.23728 4.24550 4.32848 4.35662 4.37808 4.43258 4.48813 4.50257 4.54560 4.58058 4.62162 4.64557 4.75821 4.81158 4.89733 4.99144 5.02897 5.07819 5.11343 5.29830 5.39144 5.46803 5.90401 6.13067 6.41358 6.58722 6.78613 7.11006 7.15845 7.53797 8.09387 8.70140 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.003018 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.930930 B = 9275.518543 C =10503.510331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.276 6.276 3 C -0.064 4.064 4 H 0.135 0.865 5 C -0.133 4.133 6 C 0.555 3.445 7 O -0.569 6.569 8 N -0.637 5.637 9 C 0.105 3.895 10 C -0.105 4.105 11 H 0.144 0.856 12 C -0.087 4.087 13 C 0.056 3.944 14 N -0.538 5.538 15 C 0.065 3.935 16 C 0.445 3.555 17 O -0.609 6.609 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.268 1.268 27 C 0.058 3.942 28 C 0.135 3.865 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.394 0.606 45 H 0.277 0.723 46 H 0.057 0.943 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 6.548 -21.623 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.051 6.051 3 C -0.195 4.195 4 H 0.153 0.847 5 C -0.192 4.192 6 C 0.343 3.657 7 O -0.447 6.447 8 N -0.373 5.373 9 C -0.016 4.016 10 C -0.124 4.124 11 H 0.161 0.839 12 C -0.124 4.124 13 C -0.071 4.071 14 N -0.263 5.263 15 C -0.067 4.067 16 C 0.232 3.768 17 O -0.495 6.495 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.215 4.215 22 N -0.564 5.564 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.193 1.193 27 C -0.070 4.070 28 C 0.031 3.969 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.977 5.009 -20.922 26.797 hybrid contribution 0.712 0.581 0.911 1.295 sum -15.265 5.589 -20.011 25.781 Atomic orbital electron populations 1.23563 0.90949 1.07718 1.06312 1.87807 1.10126 1.09108 1.98052 1.23168 0.95346 0.96534 1.04478 0.84671 1.21912 1.02641 1.01211 0.93473 1.19556 0.89327 0.80469 0.76314 1.90720 1.61826 1.41152 1.51044 1.49478 1.10929 1.12068 1.64782 1.23562 0.97841 0.77939 1.02298 1.22877 0.96778 0.95896 0.96843 0.83870 1.21088 0.96115 1.01662 0.93579 1.21812 0.97897 0.85941 1.01473 1.59979 1.40621 1.16308 1.09434 1.21580 0.92977 1.01709 0.90394 1.20630 0.84794 0.83009 0.88373 1.90431 1.26775 1.49493 1.82769 1.41952 1.17379 1.56039 1.05924 1.19694 1.03124 1.40509 0.82649 0.90265 1.26084 0.94689 0.96150 1.04557 1.69693 1.07496 1.42695 1.36514 0.84844 0.78357 0.78291 0.76668 1.19669 1.19761 1.19300 1.21390 0.98139 1.00455 0.87036 1.22319 0.83415 0.91785 0.99339 0.85950 0.86935 0.89363 0.88491 0.94233 0.90273 0.88788 0.85743 0.88992 0.88918 0.93392 0.91941 0.94400 0.89477 0.91392 0.77244 0.91319 0.92497 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 10.45 113.37 1.18 -0.41 16 2 S -0.28 -7.09 21.04 -56.49 -1.19 -8.28 16 3 C -0.06 -1.42 3.02 29.85 0.09 -1.33 16 4 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 5 C -0.13 -2.85 9.08 71.98 0.65 -2.19 16 6 C 0.55 16.57 7.18 87.66 0.63 17.20 16 7 O -0.57 -23.36 15.44 -3.02 -0.05 -23.40 16 8 N -0.64 -14.19 3.37 -857.47 -2.89 -17.08 16 9 C 0.10 1.16 7.78 81.80 0.64 1.80 16 10 C -0.11 -1.48 4.63 -10.66 -0.05 -1.53 16 11 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 12 C -0.09 -1.97 5.65 30.23 0.17 -1.80 16 13 C 0.06 1.78 5.05 85.98 0.43 2.21 16 14 N -0.54 -19.28 4.34 -912.49 -3.96 -23.24 16 15 C 0.06 2.57 5.43 85.56 0.46 3.04 16 16 C 0.44 22.78 7.41 87.66 0.65 23.43 16 17 O -0.61 -35.02 13.73 -3.08 -0.04 -35.06 16 18 N -0.58 -31.48 5.29 -306.98 -1.62 -33.10 16 19 C -0.33 -19.55 9.68 84.04 0.81 -18.74 16 20 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 22 N -0.92 -51.87 13.05 21.66 0.28 -51.59 16 23 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 C 0.06 1.65 4.99 85.92 0.43 2.08 16 28 C 0.13 2.69 4.09 39.34 0.16 2.85 16 29 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.04 7.14 -2.39 -0.02 1.03 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.53 7.69 -2.39 -0.02 1.51 16 35 H 0.09 1.42 6.92 -2.39 -0.02 1.40 16 36 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.85 7.58 -2.39 -0.02 0.84 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.36 7.69 -2.39 -0.02 1.35 16 40 H 0.06 2.60 5.51 -2.39 -0.01 2.58 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 3.45 8.07 -2.39 -0.02 3.43 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.39 20.71 7.90 -92.71 -0.73 19.98 16 45 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.06 2.01 7.00 -2.39 -0.02 1.99 16 47 H 0.05 1.26 8.09 -2.38 -0.02 1.24 16 Total: -1.00 -84.26 387.55 -0.46 -84.72 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.25 Total: 34.37 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 6.74 Total: 26.21 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -8.19 Total: -125.01 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.09 Total: -58.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.19 Total: -8.28 kcal Total: -84.26 -0.46 -84.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221302567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.895 kcal (2) G-P(sol) polarization free energy of solvation -84.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds