Wall clock time and date at job start Wed Apr 1 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47446 * 2 1 4 4 C 1.34228 * 117.00120 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99816 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.46621 * 174.33237 * 6 4 3 8 8 C 1.46895 * 111.00508 * 287.76898 * 7 6 4 9 9 C 1.50702 * 109.47328 * 293.98071 * 8 7 6 10 10 H 1.08003 * 119.99534 * 5.32103 * 9 8 7 11 11 C 1.37874 * 120.00663 * 185.31746 * 9 8 7 12 12 N 1.31523 * 119.99495 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00493 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46847 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47399 * 119.99985 * 13 11 9 16 16 H 1.48501 * 109.46995 * 240.00210 * 13 11 9 17 17 C 1.46910 * 110.99841 * 163.81682 * 7 6 4 18 18 C 1.52996 * 109.47224 * 189.99867 * 17 7 6 19 19 H 1.09001 * 109.47265 * 305.00021 * 18 17 7 20 20 O 1.42905 * 109.47303 * 65.00058 * 18 17 7 21 21 C 1.53002 * 109.47268 * 184.99922 * 18 17 7 22 22 O 1.42898 * 109.47238 * 175.00223 * 21 18 17 23 23 C 1.42903 * 114.00006 * 180.02562 * 22 21 18 24 24 C 1.50700 * 109.47097 * 179.97438 * 23 22 21 25 25 C 1.34515 * 125.78473 * 89.71369 * 24 23 22 26 26 C 1.41385 * 106.83849 * 179.88851 * 25 24 23 27 27 C 1.34516 * 106.83991 * 0.37166 * 26 25 24 28 28 O 1.34299 * 125.79311 * 270.02460 * 24 23 22 29 29 H 1.09007 * 109.46862 * 59.99738 * 1 2 3 30 30 H 1.08995 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47163 * 300.00282 * 1 2 3 32 32 H 1.09000 * 109.47163 * 239.99718 * 2 1 3 33 33 H 1.09007 * 109.46862 * 120.00262 * 2 1 3 34 34 H 1.09003 * 109.47152 * 54.33259 * 6 4 3 35 35 H 1.09000 * 109.46882 * 294.33376 * 6 4 3 36 36 H 1.09003 * 109.46893 * 53.97650 * 8 7 6 37 37 H 1.09003 * 109.47894 * 173.98030 * 8 7 6 38 38 H 0.97000 * 119.99733 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46770 * 69.99621 * 17 7 6 40 40 H 1.08994 * 109.46927 * 310.00154 * 17 7 6 41 41 H 0.96696 * 113.99398 * 59.99698 * 20 18 17 42 42 H 1.08994 * 109.47227 * 295.00394 * 21 18 17 43 43 H 1.09003 * 109.46921 * 54.99873 * 21 18 17 44 44 H 1.08995 * 109.46752 * 299.99648 * 23 22 21 45 45 H 1.08995 * 109.47032 * 59.99575 * 23 22 21 46 46 H 1.07996 * 126.58324 * 0.02926 * 25 24 23 47 47 H 1.07998 * 126.58045 * 180.16638 * 26 25 24 48 48 H 1.07999 * 125.78921 * 179.74360 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3814 2.8630 0.1375 8 6 5.7626 2.4688 1.5003 9 6 5.3658 3.5547 2.4669 10 1 4.8033 4.4084 2.1188 11 6 5.7208 3.4584 3.7957 12 7 6.4062 2.4190 4.2195 13 14 5.2283 4.8040 4.9940 14 1 4.4689 5.8562 4.2719 15 1 4.3777 4.2260 6.0652 16 1 6.4474 5.4000 5.5973 17 6 6.0110 4.1362 -0.2377 18 6 7.5272 3.9498 -0.3232 19 1 7.8969 3.5429 0.6180 20 8 7.8369 3.0471 -1.3869 21 6 8.1929 5.3011 -0.5911 22 8 9.6132 5.1478 -0.5554 23 6 10.3346 6.3580 -0.7943 24 6 11.8146 6.0810 -0.7331 25 6 12.5904 5.7174 -1.7702 26 6 13.9028 5.5662 -1.2667 27 6 13.8490 5.8384 0.0495 28 8 12.5817 6.1495 0.3671 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5056 3.5026 0.8344 35 1 3.6688 3.4344 -0.9368 36 1 5.2539 1.5421 1.7661 37 1 6.8411 2.3174 1.5466 38 1 6.6563 2.3514 5.1543 39 1 5.7795 4.8912 0.5136 40 1 5.6293 4.4587 -1.2063 41 1 7.5366 3.3458 -2.2561 42 1 7.8914 5.6664 -1.5727 43 1 7.8852 6.0154 0.1726 44 1 10.0776 6.7456 -1.7801 45 1 10.0713 7.0939 -0.0346 46 1 12.2722 5.5714 -2.7919 47 1 14.7796 5.2830 -1.8301 48 1 14.6834 5.8109 0.7348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252642343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:23 Heat of formation + Delta-G solvation = -152.797777 kcal Electronic energy + Delta-G solvation = -29909.482284 eV Core-core repulsion = 25546.342460 eV Total energy + Delta-G solvation = -4363.139824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59561 -39.89987 -38.52640 -37.22176 -36.08463 -35.11688 -33.09261 -32.49822 -31.59891 -31.24758 -29.85452 -27.94007 -26.74126 -25.56223 -24.07920 -23.15513 -22.08385 -21.82526 -20.77112 -20.46856 -19.69080 -17.58981 -17.40457 -16.80299 -16.56193 -16.27792 -16.22639 -15.94464 -15.53224 -15.47828 -14.95602 -14.72722 -14.71300 -14.26466 -13.90815 -13.53162 -13.29709 -12.99759 -12.89752 -12.78889 -12.70766 -12.41127 -12.39145 -12.02383 -11.85059 -11.64480 -11.39988 -11.24075 -11.12107 -11.04280 -10.87406 -10.54405 -10.37429 -10.16643 -10.00315 -9.94598 -9.74548 -9.65193 -9.61180 -9.42356 -8.62201 -8.45895 -7.28643 -6.06254 -4.17803 1.56349 2.48874 2.87484 2.90224 3.06976 3.22801 3.31130 3.32185 3.86502 4.35168 4.59876 4.87065 4.88485 4.93349 4.99684 5.06090 5.10436 5.13803 5.18502 5.23513 5.28368 5.30421 5.43101 5.46254 5.56868 5.69215 5.70503 5.74279 5.81471 5.82956 5.85471 5.88222 5.98760 6.03383 6.14121 6.36003 6.40021 6.66885 6.91388 7.06899 7.10061 7.20528 7.51662 7.84806 7.90666 8.10243 8.19344 8.25503 8.48286 8.92617 9.49248 10.98609 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.002664 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.197622 B =10507.718456 C =12301.078228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.464 3.536 5 O -0.484 6.484 6 C 0.069 3.931 7 N -0.517 5.517 8 C 0.183 3.817 9 C -0.562 4.562 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.882 5.882 13 Si 0.886 3.114 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.039 3.961 18 C 0.117 3.883 19 H 0.120 0.880 20 O -0.539 6.539 21 C 0.034 3.966 22 O -0.368 6.368 23 C 0.140 3.860 24 C -0.011 4.011 25 C -0.189 4.189 26 C -0.219 4.219 27 C -0.034 4.034 28 O -0.170 6.170 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.359 0.641 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 7.395 -12.657 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.305 3.695 5 O -0.368 6.368 6 C -0.061 4.061 7 N -0.242 5.242 8 C 0.058 3.942 9 C -0.601 4.601 10 H 0.076 0.924 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.714 3.286 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.090 4.090 18 C 0.058 3.942 19 H 0.138 0.862 20 O -0.342 6.342 21 C -0.043 4.043 22 O -0.287 6.287 23 C 0.064 3.936 24 C -0.061 4.061 25 C -0.208 4.208 26 C -0.239 4.239 27 C -0.102 4.102 28 O -0.065 6.065 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.204 0.796 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.167 0.833 47 H 0.166 0.834 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.646 6.156 -11.998 13.742 hybrid contribution -0.668 1.665 0.840 1.981 sum 1.978 7.821 -11.157 13.768 Atomic orbital electron populations 1.21781 0.93192 1.02484 1.03249 1.22880 0.94802 0.81149 1.02373 1.86474 1.25633 1.31597 1.85037 1.23798 0.79757 0.93310 0.72608 1.90648 1.59965 1.42844 1.43375 1.21411 0.91680 0.89784 1.03195 1.62134 1.03451 1.28008 1.30575 1.19911 0.97981 0.95920 0.80423 1.21742 1.36724 1.07327 0.94268 0.92426 1.24943 0.94706 0.95502 0.98291 1.69973 1.37439 1.28536 1.15963 0.86638 0.78405 0.82116 0.81451 1.19795 1.20911 1.20846 1.22468 0.94014 0.92811 0.99666 1.21921 0.92457 0.87082 0.92757 0.86239 1.86729 1.82187 1.47901 1.17366 1.23352 0.80575 1.00060 1.00313 1.88093 1.17717 1.30005 1.92871 1.20603 0.83414 0.88360 1.01262 1.22005 0.93114 1.06537 0.84487 1.21627 0.93224 1.05589 1.00363 1.21839 0.98553 1.08352 0.95118 1.24087 0.85131 1.03931 0.97084 1.84040 1.18748 1.68157 1.35600 0.91788 0.90676 0.91560 0.91688 0.91408 0.89699 0.88852 0.94569 0.93840 0.92703 0.92141 0.92414 0.79615 0.93233 0.91962 0.90283 0.91605 0.83325 0.83369 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.31 10.22 -39.25 -0.40 -6.71 16 4 C 0.46 9.19 7.52 36.01 0.27 9.46 16 5 O -0.48 -11.22 14.92 -18.74 -0.28 -11.50 16 6 C 0.07 1.27 5.43 -4.98 -0.03 1.24 16 7 N -0.52 -10.85 4.25 -237.52 -1.01 -11.85 16 8 C 0.18 4.73 4.56 -4.98 -0.02 4.71 16 9 C -0.56 -14.75 7.33 -34.44 -0.25 -15.01 16 10 H 0.06 1.44 5.97 -52.48 -0.31 1.13 16 11 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 12 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.04 0.68 4.36 -3.82 -0.02 0.66 16 18 C 0.12 2.09 3.20 -26.73 -0.09 2.01 16 19 H 0.12 2.67 6.38 -51.93 -0.33 2.34 16 20 O -0.54 -9.71 13.25 -40.09 -0.53 -10.25 16 21 C 0.03 0.49 5.57 37.16 0.21 0.69 16 22 O -0.37 -5.90 10.29 -40.09 -0.41 -6.32 16 23 C 0.14 1.74 6.47 36.01 0.23 1.97 16 24 C -0.01 -0.15 6.95 -35.62 -0.25 -0.40 16 25 C -0.19 -2.29 10.81 -39.70 -0.43 -2.72 16 26 C -0.22 -2.39 10.91 -39.70 -0.43 -2.82 16 27 C -0.03 -0.38 12.09 29.42 0.36 -0.02 16 28 O -0.17 -2.41 10.65 5.73 0.06 -2.35 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.09 1.64 6.51 -51.93 -0.34 1.30 16 35 H 0.09 1.37 7.80 -51.93 -0.41 0.96 16 36 H 0.04 1.06 6.58 -51.93 -0.34 0.72 16 37 H 0.04 1.25 6.47 -51.93 -0.34 0.91 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.06 1.11 6.26 -51.93 -0.33 0.78 16 40 H 0.06 0.80 7.86 -51.93 -0.41 0.39 16 41 H 0.36 4.75 9.04 45.56 0.41 5.16 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -35.40 403.48 -7.30 -42.71 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.59 Total: 8.08 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.07 Total: 1.53 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.27 Total: -37.10 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -1.56 Total: -37.12 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.40 -7.30 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252642343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.089 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds