Wall clock time and date at job start Wed Apr 1 2020 01:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.47043 * 2 1 4 4 C 1.34230 * 117.00024 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99782 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.46887 * 182.83822 * 6 4 3 8 8 C 1.46898 * 110.99986 * 288.33598 * 7 6 4 9 9 C 1.50701 * 109.47376 * 294.66503 * 8 7 6 10 10 H 1.07994 * 120.00073 * 4.56357 * 9 8 7 11 11 C 1.37878 * 120.00090 * 184.56289 * 9 8 7 12 12 N 1.31513 * 120.00073 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47027 * 90.00123 * 13 11 9 15 15 H 1.48501 * 109.46842 * 210.00251 * 13 11 9 16 16 H 1.48497 * 109.46791 * 330.00014 * 13 11 9 17 17 C 1.46893 * 110.99895 * 164.38311 * 7 6 4 18 18 C 1.52997 * 109.47272 * 201.21430 * 17 7 6 19 19 H 1.09003 * 109.47103 * 53.18159 * 18 17 7 20 20 O 1.42904 * 109.46896 * 293.18122 * 18 17 7 21 21 C 1.52995 * 109.47628 * 173.18427 * 18 17 7 22 22 O 1.42897 * 109.47561 * 184.99795 * 21 18 17 23 23 C 1.42901 * 113.99910 * 179.97438 * 22 21 18 24 24 C 1.50700 * 109.46621 * 180.02562 * 23 22 21 25 25 C 1.34517 * 125.79167 * 90.00381 * 24 23 22 26 26 C 1.41380 * 106.84056 * 179.78842 * 25 24 23 27 27 C 1.34515 * 106.84318 * 0.37043 * 26 25 24 28 28 O 1.34303 * 108.41997 * 359.62688 * 27 26 25 29 29 H 1.09000 * 109.47826 * 300.00375 * 1 2 3 30 30 H 1.09009 * 109.46998 * 60.00819 * 1 2 3 31 31 H 1.09002 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47321 * 239.99731 * 2 1 3 33 33 H 1.09003 * 109.46555 * 119.99189 * 2 1 3 34 34 H 1.09002 * 109.46754 * 62.84357 * 6 4 3 35 35 H 1.08988 * 109.47729 * 302.84126 * 6 4 3 36 36 H 1.09004 * 109.46948 * 54.66580 * 8 7 6 37 37 H 1.09001 * 109.47064 * 174.66318 * 8 7 6 38 38 H 0.96993 * 120.00370 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.47207 * 81.21455 * 17 7 6 40 40 H 1.09004 * 109.47320 * 321.21560 * 17 7 6 41 41 H 0.96693 * 114.00406 * 300.00088 * 20 18 17 42 42 H 1.09000 * 109.47401 * 64.99457 * 21 18 17 43 43 H 1.09007 * 109.46829 * 305.00358 * 21 18 17 44 44 H 1.08995 * 109.47063 * 60.00393 * 23 22 21 45 45 H 1.09003 * 109.46979 * 299.99712 * 23 22 21 46 46 H 1.07993 * 126.57819 * 0.04240 * 25 24 23 47 47 H 1.07998 * 126.57999 * 180.23710 * 26 25 24 48 48 H 1.07999 * 125.79031 * 179.88898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3862 2.8612 -0.0678 8 6 5.9475 2.3793 1.2012 9 6 5.6759 3.3890 2.2864 10 1 5.0769 4.2622 2.0739 11 6 6.1921 3.1982 3.5506 12 7 6.9211 2.1346 3.8095 13 14 5.8560 4.4502 4.8955 14 1 4.6124 4.0795 5.6173 15 1 6.9944 4.4702 5.8489 16 1 5.6941 5.7962 4.2895 17 6 5.9642 4.1594 -0.4398 18 6 7.3685 3.9482 -1.0091 19 1 7.3273 3.2155 -1.8152 20 8 8.2344 3.4724 0.0233 21 6 7.9036 5.2746 -1.5524 22 8 9.1645 5.0552 -2.1878 23 6 9.7541 6.2372 -2.7331 24 6 11.0724 5.8905 -3.3755 25 6 11.2510 5.5267 -4.6581 26 6 12.6360 5.3007 -4.8308 27 6 13.2199 5.5320 -3.6412 28 8 12.2684 5.8919 -2.7643 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 3.6256 3.4530 0.9140 35 1 3.5450 3.4858 -0.8638 36 1 5.4846 1.4285 1.4654 37 1 7.0235 2.2420 1.0937 38 1 7.2845 2.0005 4.6987 39 1 6.0218 4.7976 0.4420 40 1 5.3349 4.6352 -1.1921 41 1 8.3188 4.0751 0.7747 42 1 8.0286 5.9798 -0.7307 43 1 7.1977 5.6818 -2.2764 44 1 9.9174 6.9626 -1.9362 45 1 9.0866 6.6639 -3.4818 46 1 10.4843 5.4301 -5.4124 47 1 13.1300 4.9982 -5.7422 48 1 14.2753 5.4470 -3.4286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252642346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:26 Heat of formation + Delta-G solvation = -151.248627 kcal Electronic energy + Delta-G solvation = -29886.027708 eV Core-core repulsion = 25522.955060 eV Total energy + Delta-G solvation = -4363.072648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.64329 -39.89306 -38.52362 -37.24554 -36.04769 -34.84764 -33.13962 -32.49270 -31.59131 -31.27917 -29.86034 -27.95420 -26.66654 -25.55901 -24.05346 -23.07148 -21.87578 -21.85647 -20.85421 -20.52433 -19.75847 -17.63170 -17.35107 -16.80734 -16.63087 -16.23149 -16.18829 -15.90117 -15.53029 -15.47285 -14.99108 -14.78527 -14.46550 -14.32250 -13.99056 -13.43119 -13.14762 -12.99873 -12.94544 -12.81229 -12.74351 -12.38329 -12.34275 -12.02338 -11.87647 -11.64545 -11.40746 -11.28270 -11.01968 -10.98910 -10.83655 -10.48943 -10.35244 -10.13895 -10.05555 -10.01949 -9.78782 -9.69938 -9.50736 -9.10582 -8.66846 -8.30735 -7.25762 -6.00056 -4.10147 1.51469 2.44091 2.82653 2.92450 3.06636 3.24668 3.32297 3.33168 3.82421 4.38301 4.56266 4.83821 4.88398 4.94641 5.00176 5.05590 5.08462 5.10671 5.14306 5.28074 5.30212 5.35767 5.43256 5.47975 5.53971 5.65768 5.72525 5.77345 5.78052 5.83722 5.87352 5.89942 5.93861 6.02597 6.14981 6.23333 6.35100 6.70344 6.92330 7.01775 7.10747 7.28106 7.61046 7.95616 8.09889 8.26629 8.29204 8.46365 8.50750 9.02751 9.54764 11.04542 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.002646 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.037121 B =10581.158640 C =12683.130275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.463 3.537 5 O -0.483 6.483 6 C 0.067 3.933 7 N -0.522 5.522 8 C 0.170 3.830 9 C -0.559 4.559 10 H 0.053 0.947 11 C 0.070 3.930 12 N -0.879 5.879 13 Si 0.883 3.117 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.031 3.969 18 C 0.123 3.877 19 H 0.103 0.897 20 O -0.535 6.535 21 C 0.032 3.968 22 O -0.368 6.368 23 C 0.140 3.860 24 C -0.011 4.011 25 C -0.190 4.190 26 C -0.219 4.219 27 C -0.034 4.034 28 O -0.170 6.170 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.375 0.625 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 7.851 -14.679 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.304 3.696 5 O -0.367 6.367 6 C -0.062 4.062 7 N -0.246 5.246 8 C 0.046 3.954 9 C -0.598 4.598 10 H 0.071 0.929 11 C -0.134 4.134 12 N -0.516 5.516 13 Si 0.711 3.289 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.097 4.097 18 C 0.063 3.937 19 H 0.121 0.879 20 O -0.340 6.340 21 C -0.045 4.045 22 O -0.288 6.288 23 C 0.064 3.936 24 C -0.061 4.061 25 C -0.209 4.209 26 C -0.238 4.238 27 C -0.102 4.102 28 O -0.066 6.066 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.223 0.777 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.167 0.833 47 H 0.166 0.834 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.429 6.454 -15.005 16.340 hybrid contribution -0.532 1.726 1.672 2.461 sum -0.103 8.180 -13.333 15.643 Atomic orbital electron populations 1.21781 0.93213 1.02483 1.03219 1.22876 0.94770 0.81181 1.02387 1.86473 1.25693 1.31582 1.85111 1.23828 0.79715 0.93368 0.72643 1.90650 1.59868 1.42899 1.43315 1.21473 0.91844 0.89609 1.03301 1.62172 1.00773 1.24401 1.37281 1.20246 0.98597 0.95206 0.81401 1.21717 1.33397 1.08352 0.96342 0.92924 1.24912 0.94959 0.95217 0.98312 1.69967 1.33573 1.26682 1.21416 0.86758 0.77934 0.81823 0.82398 1.20804 1.21146 1.20071 1.22570 0.94976 0.92271 0.99903 1.21748 0.88178 0.92947 0.90836 0.87918 1.86653 1.67232 1.48947 1.31199 1.23410 0.84714 0.99947 0.96468 1.88084 1.35513 1.30157 1.75015 1.20607 0.86999 0.88576 0.97454 1.22009 0.85588 1.06558 0.91961 1.21635 0.97028 1.05534 0.96717 1.21843 0.94306 1.08325 0.99373 1.24088 0.94204 1.03545 0.88384 1.84039 1.15523 1.67484 1.39507 0.91601 0.91783 0.90681 0.91666 0.91436 0.89629 0.89082 0.94595 0.90999 0.92810 0.91831 0.92191 0.77742 0.92726 0.92602 0.91630 0.90261 0.83319 0.83361 0.78016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.30 10.22 -39.26 -0.40 -6.70 16 4 C 0.46 9.21 7.70 36.00 0.28 9.49 16 5 O -0.48 -11.29 14.44 -18.75 -0.27 -11.56 16 6 C 0.07 1.24 5.42 -4.97 -0.03 1.21 16 7 N -0.52 -10.88 4.29 -237.52 -1.02 -11.89 16 8 C 0.17 4.36 4.53 -4.98 -0.02 4.34 16 9 C -0.56 -14.49 7.16 -34.44 -0.25 -14.74 16 10 H 0.05 1.31 6.10 -52.49 -0.32 0.99 16 11 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 12 N -0.88 -25.65 13.29 55.43 0.74 -24.91 16 13 Si 0.88 20.62 29.54 -169.99 -5.02 15.60 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.03 0.54 4.62 -3.83 -0.02 0.52 16 18 C 0.12 2.09 3.46 -26.74 -0.09 2.00 16 19 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 20 O -0.54 -10.99 10.57 -40.09 -0.42 -11.41 16 21 C 0.03 0.42 5.57 37.16 0.21 0.63 16 22 O -0.37 -5.52 10.29 -40.09 -0.41 -5.94 16 23 C 0.14 1.62 6.47 36.01 0.23 1.85 16 24 C -0.01 -0.14 6.95 -35.62 -0.25 -0.39 16 25 C -0.19 -2.18 10.81 -39.70 -0.43 -2.61 16 26 C -0.22 -2.25 10.91 -39.70 -0.43 -2.68 16 27 C -0.03 -0.35 12.09 29.42 0.36 0.01 16 28 O -0.17 -2.26 10.65 5.69 0.06 -2.20 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.09 1.66 6.48 -51.93 -0.34 1.33 16 35 H 0.09 1.34 7.68 -51.94 -0.40 0.94 16 36 H 0.04 1.06 6.24 -51.93 -0.32 0.74 16 37 H 0.07 2.02 5.63 -51.93 -0.29 1.73 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.06 1.17 6.09 -51.93 -0.32 0.85 16 40 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 41 H 0.37 7.20 9.04 45.56 0.41 7.62 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -34.55 401.00 -7.24 -41.79 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.60 Total: 9.79 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 0.07 Total: 1.39 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.28 Total: -36.80 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.45 Total: -37.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.55 -7.24 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252642346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.462 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds