Wall clock time and date at job start Wed Apr 1 2020 01:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.47043 * 2 1 4 4 C 1.34230 * 117.00024 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99782 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.46887 * 182.83822 * 6 4 3 8 8 C 1.46898 * 110.99986 * 288.33598 * 7 6 4 9 9 C 1.50701 * 109.47376 * 294.66503 * 8 7 6 10 10 H 1.07994 * 120.00073 * 4.56357 * 9 8 7 11 11 C 1.37878 * 120.00090 * 184.56289 * 9 8 7 12 12 N 1.31513 * 120.00073 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47027 * 90.00123 * 13 11 9 15 15 H 1.48501 * 109.46842 * 210.00251 * 13 11 9 16 16 H 1.48497 * 109.46791 * 330.00014 * 13 11 9 17 17 C 1.46893 * 110.99895 * 164.38311 * 7 6 4 18 18 C 1.52997 * 109.47272 * 201.21430 * 17 7 6 19 19 H 1.09003 * 109.47103 * 53.18159 * 18 17 7 20 20 O 1.42904 * 109.46896 * 293.18122 * 18 17 7 21 21 C 1.52995 * 109.47628 * 173.18427 * 18 17 7 22 22 O 1.42897 * 109.47561 * 184.99795 * 21 18 17 23 23 C 1.42901 * 113.99910 * 179.97438 * 22 21 18 24 24 C 1.50700 * 109.46621 * 180.02562 * 23 22 21 25 25 C 1.34517 * 125.79167 * 90.00381 * 24 23 22 26 26 C 1.41380 * 106.84056 * 179.78842 * 25 24 23 27 27 C 1.34515 * 106.84318 * 0.37043 * 26 25 24 28 28 O 1.34303 * 108.41997 * 359.62688 * 27 26 25 29 29 H 1.09000 * 109.47826 * 300.00375 * 1 2 3 30 30 H 1.09009 * 109.46998 * 60.00819 * 1 2 3 31 31 H 1.09002 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47321 * 239.99731 * 2 1 3 33 33 H 1.09003 * 109.46555 * 119.99189 * 2 1 3 34 34 H 1.09002 * 109.46754 * 62.84357 * 6 4 3 35 35 H 1.08988 * 109.47729 * 302.84126 * 6 4 3 36 36 H 1.09004 * 109.46948 * 54.66580 * 8 7 6 37 37 H 1.09001 * 109.47064 * 174.66318 * 8 7 6 38 38 H 0.96993 * 120.00370 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.47207 * 81.21455 * 17 7 6 40 40 H 1.09004 * 109.47320 * 321.21560 * 17 7 6 41 41 H 0.96693 * 114.00406 * 300.00088 * 20 18 17 42 42 H 1.09000 * 109.47401 * 64.99457 * 21 18 17 43 43 H 1.09007 * 109.46829 * 305.00358 * 21 18 17 44 44 H 1.08995 * 109.47063 * 60.00393 * 23 22 21 45 45 H 1.09003 * 109.46979 * 299.99712 * 23 22 21 46 46 H 1.07993 * 126.57819 * 0.04240 * 25 24 23 47 47 H 1.07998 * 126.57999 * 180.23710 * 26 25 24 48 48 H 1.07999 * 125.79031 * 179.88898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3862 2.8612 -0.0678 8 6 5.9475 2.3793 1.2012 9 6 5.6759 3.3890 2.2864 10 1 5.0769 4.2622 2.0739 11 6 6.1921 3.1982 3.5506 12 7 6.9211 2.1346 3.8095 13 14 5.8560 4.4502 4.8955 14 1 4.6124 4.0795 5.6173 15 1 6.9944 4.4702 5.8489 16 1 5.6941 5.7962 4.2895 17 6 5.9642 4.1594 -0.4398 18 6 7.3685 3.9482 -1.0091 19 1 7.3273 3.2155 -1.8152 20 8 8.2344 3.4724 0.0233 21 6 7.9036 5.2746 -1.5524 22 8 9.1645 5.0552 -2.1878 23 6 9.7541 6.2372 -2.7331 24 6 11.0724 5.8905 -3.3755 25 6 11.2510 5.5267 -4.6581 26 6 12.6360 5.3007 -4.8308 27 6 13.2199 5.5320 -3.6412 28 8 12.2684 5.8919 -2.7643 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 3.6256 3.4530 0.9140 35 1 3.5450 3.4858 -0.8638 36 1 5.4846 1.4285 1.4654 37 1 7.0235 2.2420 1.0937 38 1 7.2845 2.0005 4.6987 39 1 6.0218 4.7976 0.4420 40 1 5.3349 4.6352 -1.1921 41 1 8.3188 4.0751 0.7747 42 1 8.0286 5.9798 -0.7307 43 1 7.1977 5.6818 -2.2764 44 1 9.9174 6.9626 -1.9362 45 1 9.0866 6.6639 -3.4818 46 1 10.4843 5.4301 -5.4124 47 1 13.1300 4.9982 -5.7422 48 1 14.2753 5.4470 -3.4286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252642346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:25 Heat of formation + Delta-G solvation = -177.119299 kcal Electronic energy + Delta-G solvation = -29887.149544 eV Core-core repulsion = 25522.955060 eV Total energy + Delta-G solvation = -4364.194484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.48205 -41.41477 -39.79699 -38.56177 -37.50093 -36.45582 -34.50963 -33.99031 -32.68331 -32.28306 -31.08836 -29.68687 -28.08031 -26.66571 -25.57035 -24.36687 -23.22802 -22.70087 -22.18782 -21.48304 -21.36697 -18.96819 -18.47891 -18.38345 -17.91573 -17.64086 -17.36827 -17.13431 -16.95912 -16.55544 -16.47384 -16.12126 -15.96461 -15.65582 -15.25384 -14.77845 -14.64486 -14.19871 -14.07489 -13.87249 -13.75432 -13.55725 -13.51980 -13.25516 -13.06976 -12.93266 -12.81421 -12.62179 -12.56749 -12.52958 -12.44063 -12.18446 -12.04873 -11.65506 -11.53907 -11.46276 -11.25796 -10.88593 -10.78077 -10.62573 -10.30730 -9.50854 -8.97427 -8.05389 -6.25130 0.65997 1.36813 1.40905 1.41763 1.51333 1.63277 1.72399 2.05691 2.41845 2.80775 3.19974 3.48319 3.69646 3.83942 3.93739 4.01376 4.10652 4.11879 4.14672 4.17906 4.22438 4.30979 4.36403 4.38099 4.40143 4.41934 4.54556 4.59576 4.66251 4.86457 4.88532 4.89286 4.94629 4.99956 5.16307 5.16469 5.31328 5.41871 5.50096 5.56217 5.59172 5.99269 6.05975 6.17116 6.18957 6.29589 6.50357 6.97198 6.98415 7.00560 7.45277 8.97471 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.002646 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.037121 B =10581.158640 C =12683.130275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.529 6.529 6 C 0.066 3.934 7 N -0.535 5.535 8 C 0.193 3.807 9 C -0.550 4.550 10 H 0.069 0.931 11 C 0.013 3.987 12 N -0.926 5.926 13 Si 0.954 3.046 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.255 1.255 17 C 0.036 3.964 18 C 0.119 3.881 19 H 0.086 0.914 20 O -0.567 6.567 21 C 0.042 3.958 22 O -0.402 6.402 23 C 0.138 3.862 24 C -0.045 4.045 25 C -0.195 4.195 26 C -0.230 4.230 27 C -0.039 4.039 28 O -0.197 6.197 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.141 0.859 36 H -0.013 1.013 37 H 0.040 0.960 38 H 0.260 0.740 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.375 0.625 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.165 0.835 47 H 0.173 0.827 48 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 10.457 -16.186 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.305 3.695 5 O -0.417 6.417 6 C -0.062 4.062 7 N -0.259 5.259 8 C 0.066 3.934 9 C -0.589 4.589 10 H 0.087 0.913 11 C -0.187 4.187 12 N -0.566 5.566 13 Si 0.780 3.220 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.179 1.179 17 C -0.092 4.092 18 C 0.059 3.941 19 H 0.103 0.897 20 O -0.372 6.372 21 C -0.035 4.035 22 O -0.323 6.323 23 C 0.063 3.937 24 C -0.094 4.094 25 C -0.214 4.214 26 C -0.249 4.249 27 C -0.106 4.106 28 O -0.093 6.093 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.005 0.995 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.223 0.777 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.128 0.872 46 H 0.182 0.818 47 H 0.191 0.809 48 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.177 9.101 -16.547 18.921 hybrid contribution -0.050 0.831 2.016 2.181 sum -1.227 9.931 -14.531 17.643 Atomic orbital electron populations 1.21795 0.89638 1.04383 1.03854 1.23229 0.97502 0.79711 1.01791 1.86470 1.24004 1.33325 1.84350 1.24237 0.80346 0.93549 0.71413 1.90639 1.61102 1.44382 1.45587 1.21635 0.90232 0.89219 1.05147 1.61977 1.02436 1.26989 1.34493 1.19696 0.96386 0.93440 0.83845 1.21978 1.32388 1.08333 0.96234 0.91326 1.25794 0.94819 0.97029 1.01027 1.70143 1.35398 1.29154 1.21857 0.85622 0.77216 0.80077 0.79107 1.20872 1.21583 1.17856 1.22644 0.95619 0.90233 1.00713 1.21864 0.88039 0.94668 0.89516 0.89651 1.86621 1.68353 1.50152 1.32121 1.23253 0.85069 0.97491 0.97659 1.88024 1.36293 1.32414 1.75523 1.20840 0.87008 0.87472 0.98406 1.22413 0.85991 1.08278 0.92760 1.22013 0.98165 1.04570 0.96696 1.22239 0.94013 1.08229 1.00423 1.24893 0.95288 1.02297 0.88133 1.84022 1.16321 1.68190 1.40809 0.91517 0.90517 0.88156 0.91441 0.93067 0.90149 0.84166 0.99500 0.94182 0.93108 0.92703 0.87546 0.77741 0.91721 0.88934 0.90968 0.87195 0.81770 0.80922 0.74694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.43 6.19 71.98 0.45 1.88 16 3 O -0.36 -12.13 10.22 -51.41 -0.53 -12.65 16 4 C 0.46 18.42 7.70 71.24 0.55 18.97 16 5 O -0.53 -25.80 14.44 21.96 0.32 -25.48 16 6 C 0.07 2.37 5.42 85.55 0.46 2.83 16 7 N -0.53 -22.25 4.29 -905.38 -3.88 -26.13 16 8 C 0.19 10.26 4.53 85.56 0.39 10.65 16 9 C -0.55 -28.78 7.16 25.60 0.18 -28.60 16 10 H 0.07 3.31 6.10 -2.91 -0.02 3.29 16 11 C 0.01 0.70 5.46 84.66 0.46 1.16 16 12 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 13 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 17 C 0.04 1.16 4.62 86.30 0.40 1.56 16 18 C 0.12 3.98 3.46 30.59 0.11 4.09 16 19 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 20 O -0.57 -24.27 10.57 -144.34 -1.53 -25.80 16 21 C 0.04 1.03 5.57 71.98 0.40 1.44 16 22 O -0.40 -11.73 10.29 -144.34 -1.49 -13.22 16 23 C 0.14 3.01 6.47 71.24 0.46 3.47 16 24 C -0.05 -1.13 6.95 24.83 0.17 -0.95 16 25 C -0.20 -4.26 10.81 22.19 0.24 -4.02 16 26 C -0.23 -4.38 10.91 22.19 0.24 -4.14 16 27 C -0.04 -0.76 12.09 66.97 0.81 0.05 16 28 O -0.20 -5.20 10.65 -2.56 -0.03 -5.23 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.08 2.99 6.48 -2.39 -0.02 2.98 16 35 H 0.14 3.58 7.68 -2.39 -0.02 3.56 16 36 H -0.01 -0.83 6.24 -2.39 -0.01 -0.84 16 37 H 0.04 2.39 5.63 -2.39 -0.01 2.38 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.05 1.91 6.09 -2.39 -0.01 1.89 16 40 H 0.11 2.47 7.62 -2.38 -0.02 2.46 16 41 H 0.37 15.17 9.04 -74.06 -0.67 14.50 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 47 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 48 H 0.24 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -80.44 401.00 1.55 -78.89 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.30 Total: 34.42 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.06 Total: 6.56 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.60 Total: -82.01 kcal Atomic # 8 Polarization: -79.13 SS G_CDS: -3.25 Total: -82.38 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -80.44 1.55 -78.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252642346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.226 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds