Wall clock time and date at job start Wed Apr 1 2020 01:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21285 * 120.00081 * 2 1 4 4 N 1.34777 * 119.99832 * 179.97438 * 2 1 3 5 5 C 1.46930 * 120.55621 * 356.35198 * 4 2 1 6 6 C 1.53427 * 107.78368 * 135.42307 * 5 4 2 7 7 C 1.52852 * 108.85515 * 63.25979 * 6 5 4 8 8 H 1.08997 * 109.26802 * 68.84001 * 7 6 5 9 9 N 1.46497 * 109.27232 * 188.35194 * 7 6 5 10 10 C 1.35313 * 125.86970 * 85.81218 * 9 7 6 11 11 C 1.35350 * 106.17518 * 180.11760 * 10 9 7 12 12 C 1.50698 * 126.75435 * 179.85276 * 11 10 9 13 13 N 1.46498 * 109.47121 * 94.71375 * 12 11 10 14 14 C 1.36941 * 120.00074 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99546 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99895 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99658 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 120.00301 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47399 * 89.99906 * 18 16 14 20 20 H 1.48500 * 109.47458 * 210.00044 * 18 16 14 21 21 H 1.48500 * 109.47271 * 329.99992 * 18 16 14 22 22 N 1.33777 * 106.49577 * 359.59561 * 11 10 9 23 23 N 1.28632 * 108.88341 * 0.25957 * 22 11 10 24 24 C 1.50600 * 110.46987 * 308.59539 * 7 6 5 25 25 C 1.38555 * 118.89353 * 200.49472 * 24 7 6 26 26 C 1.38119 * 120.29660 * 180.19552 * 25 24 7 27 27 C 1.38311 * 120.14918 * 0.05040 * 26 25 24 28 28 C 1.38025 * 119.90489 * 359.91013 * 27 26 25 29 29 C 1.38518 * 121.54290 * 20.62499 * 24 7 6 30 30 H 1.08999 * 109.47403 * 244.96869 * 1 2 3 31 31 H 1.09002 * 109.47037 * 4.96179 * 1 2 3 32 32 H 1.09000 * 109.47200 * 124.96054 * 1 2 3 33 33 H 1.08999 * 109.79735 * 15.85086 * 5 4 2 34 34 H 1.09003 * 109.84486 * 255.02370 * 5 4 2 35 35 H 1.08997 * 109.57178 * 303.44873 * 6 5 4 36 36 H 1.09000 * 109.67999 * 183.13054 * 6 5 4 37 37 H 1.08001 * 126.91252 * 359.97128 * 10 9 7 38 38 H 1.08999 * 109.46835 * 334.71594 * 12 11 10 39 39 H 1.08996 * 109.47090 * 214.71869 * 12 11 10 40 40 H 0.96996 * 119.99677 * 0.02562 * 13 12 11 41 41 H 0.96998 * 119.99720 * 179.97438 * 17 16 14 42 42 H 1.08011 * 119.86072 * 0.22863 * 25 24 7 43 43 H 1.07995 * 119.92662 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.04517 * 179.89666 * 27 26 25 45 45 H 1.08005 * 119.98073 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4608 -2.4454 0.0816 6 6 2.0799 -3.3983 -0.9493 7 6 3.5379 -3.6566 -0.5700 8 1 3.5722 -4.2465 0.3459 9 7 4.1937 -4.4000 -1.6487 10 6 4.7703 -3.8599 -2.7472 11 6 5.2462 -4.8987 -3.4726 12 6 5.9731 -4.8204 -4.7904 13 7 7.4185 -4.8241 -4.5517 14 6 8.2871 -4.7588 -5.6084 15 1 7.9065 -4.7051 -6.6177 16 6 9.6566 -4.7629 -5.3823 17 7 10.4915 -4.7007 -6.3979 18 14 10.3148 -4.8566 -3.6367 19 1 10.4981 -6.2793 -3.2524 20 1 11.6195 -4.1515 -3.5610 21 1 9.3502 -4.2135 -2.7087 22 7 4.9494 -6.0084 -2.7870 23 7 4.3259 -5.6788 -1.7112 24 6 4.2636 -2.3553 -0.3507 25 6 5.6471 -2.3396 -0.4246 26 6 6.3422 -1.1630 -0.2242 27 6 5.6604 0.0081 0.0528 28 6 4.2822 0.0009 0.1272 29 6 3.5805 -1.1821 -0.0757 30 1 -0.3634 -0.4348 0.9311 31 1 -0.3633 1.0238 -0.0889 32 1 -0.3633 -0.5889 -0.8422 33 1 0.4062 -2.2901 -0.1459 34 1 1.5645 -2.8658 1.0820 35 1 2.0350 -2.9444 -1.9392 36 1 1.5316 -4.3403 -0.9543 37 1 4.8353 -2.8110 -2.9963 38 1 5.6924 -3.9021 -5.3061 39 1 5.7041 -5.6792 -5.4053 40 1 7.7602 -4.8727 -3.6453 41 1 11.4485 -4.7031 -6.2399 42 1 6.1845 -3.2513 -0.6403 43 1 7.4205 -1.1575 -0.2836 44 1 6.2058 0.9268 0.2107 45 1 3.7486 0.9147 0.3431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262383286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:39 Heat of formation + Delta-G solvation = 137.456835 kcal Electronic energy + Delta-G solvation = -29681.341926 eV Core-core repulsion = 25702.682909 eV Total energy + Delta-G solvation = -3978.659018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.24356 -41.60032 -39.14027 -37.23673 -35.64780 -34.78459 -32.16496 -31.81255 -31.58852 -30.87278 -30.24603 -29.22419 -26.63238 -25.94176 -23.95710 -23.48160 -22.47999 -22.28342 -21.05549 -20.70677 -19.71504 -18.07914 -17.86503 -17.59035 -17.13168 -16.66393 -16.05333 -15.93348 -15.13323 -14.88816 -14.65375 -14.45977 -14.22695 -14.10903 -13.99075 -13.88283 -13.60061 -13.24848 -13.01829 -12.99276 -12.83085 -12.69391 -12.62898 -12.15410 -12.01100 -11.93451 -11.60596 -11.37682 -11.09333 -10.86046 -10.66700 -10.56619 -10.15742 -10.00072 -9.82904 -9.56999 -9.11753 -8.96919 -8.87391 -8.35998 -7.20827 -5.73551 -3.08985 0.78522 1.08261 1.69965 2.01326 2.14221 2.30353 2.77366 3.40936 3.46000 3.47038 3.48952 3.72794 3.86098 3.89139 4.12144 4.41523 4.50179 4.53624 4.63395 4.64121 4.66483 4.73312 4.77951 4.87906 4.92473 5.09619 5.17282 5.20686 5.20863 5.30149 5.33754 5.39749 5.58362 5.68513 5.74749 5.75744 5.82183 6.08953 6.16078 6.28262 6.32980 6.58650 6.65428 6.68404 6.71024 6.77457 7.46971 8.01063 8.45246 8.71519 9.23314 9.95898 10.16150 11.44699 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.003191 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.326470 B = 8773.049881 C = 9726.060520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.516 6.516 4 N -0.557 5.557 5 C 0.106 3.894 6 C -0.147 4.147 7 C 0.201 3.799 8 H 0.121 0.879 9 N -0.295 5.295 10 C -0.031 4.031 11 C -0.013 4.013 12 C 0.238 3.762 13 N -0.749 5.749 14 C -0.242 4.242 15 H 0.093 0.907 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.279 1.279 22 N -0.252 5.252 23 N -0.095 5.095 24 C -0.149 4.149 25 C -0.078 4.078 26 C -0.133 4.133 27 C -0.086 4.086 28 C -0.161 4.161 29 C 0.172 3.828 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.184 0.816 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.598 10.069 18.737 32.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.306 3.694 3 O -0.393 6.393 4 N -0.282 5.282 5 C -0.016 4.016 6 C -0.186 4.186 7 C 0.099 3.901 8 H 0.139 0.861 9 N -0.088 5.088 10 C -0.182 4.182 11 C -0.151 4.151 12 C 0.110 3.890 13 N -0.395 5.395 14 C -0.372 4.372 15 H 0.111 0.889 16 C -0.189 4.189 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.206 1.206 22 N -0.120 5.120 23 N -0.073 5.073 24 C -0.153 4.153 25 C -0.096 4.096 26 C -0.152 4.152 27 C -0.104 4.104 28 C -0.180 4.180 29 C 0.077 3.923 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.201 0.799 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -24.600 9.286 19.198 32.557 hybrid contribution 0.943 0.792 0.761 1.447 sum -23.658 10.078 19.959 32.552 Atomic orbital electron populations 1.22001 0.90344 1.06319 1.04655 1.21046 0.91027 0.82243 0.75116 1.90473 1.69152 1.31487 1.48150 1.45813 1.04742 1.07629 1.69969 1.22027 0.97248 0.82072 1.00287 1.22309 0.93901 1.01632 1.00759 1.20067 0.90982 0.90002 0.89051 0.86087 1.47316 1.38627 1.06218 1.16687 1.23332 1.03660 1.01751 0.89441 1.22500 1.03487 0.88316 1.00757 1.18902 0.83284 0.99903 0.86956 1.42640 1.00134 1.90921 1.05795 1.19042 0.87061 1.42837 0.88234 0.88900 1.24621 0.95719 1.01968 0.96590 1.69699 1.02040 1.57511 1.28882 0.86555 0.78173 0.77933 0.85920 1.20988 1.21719 1.20585 1.75105 1.11167 1.25670 1.00021 1.78272 1.18273 0.93579 1.17214 1.19176 0.94213 0.92510 1.09374 1.20972 0.92255 0.99117 0.97294 1.21204 1.00660 0.92450 1.00849 1.21288 0.94009 0.98197 0.96954 1.22520 0.94582 0.99347 1.01570 1.17520 0.81553 0.93694 0.99504 0.88687 0.88223 0.88892 0.87486 0.89440 0.89498 0.87983 0.79877 0.93737 0.93460 0.80531 0.93051 0.85721 0.85371 0.85268 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 8.74 36.01 0.31 -0.19 16 2 C 0.51 3.91 7.73 -10.98 -0.08 3.82 16 3 O -0.52 -5.84 13.59 5.55 0.08 -5.76 16 4 N -0.56 -4.10 2.97 -112.87 -0.34 -4.44 16 5 C 0.11 0.41 6.29 -3.59 -0.02 0.39 16 6 C -0.15 -0.90 5.70 -26.59 -0.15 -1.05 16 7 C 0.20 1.87 3.20 -69.21 -0.22 1.65 16 8 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 9 N -0.30 -3.92 2.76 -56.02 -0.15 -4.07 16 10 C -0.03 -0.47 9.25 -17.05 -0.16 -0.63 16 11 C -0.01 -0.24 6.61 -82.78 -0.55 -0.78 16 12 C 0.24 4.89 6.82 -5.20 -0.04 4.85 16 13 N -0.75 -18.65 5.40 -61.09 -0.33 -18.98 16 14 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 15 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 18 Si 0.88 22.94 27.73 -169.99 -4.71 18.22 16 19 H -0.28 -7.41 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 22 N -0.25 -4.84 12.41 33.29 0.41 -4.43 16 23 N -0.10 -1.56 13.16 60.35 0.79 -0.76 16 24 C -0.15 -1.56 4.99 -104.45 -0.52 -2.08 16 25 C -0.08 -0.94 8.12 -39.51 -0.32 -1.27 16 26 C -0.13 -1.54 10.04 -39.60 -0.40 -1.94 16 27 C -0.09 -0.92 10.05 -39.63 -0.40 -1.31 16 28 C -0.16 -1.79 8.97 -39.36 -0.35 -2.14 16 29 C 0.17 1.74 6.32 -83.64 -0.53 1.22 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.10 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.09 0.12 7.44 -51.93 -0.39 -0.27 16 33 H 0.11 0.09 6.05 -51.93 -0.31 -0.22 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.18 2.48 7.73 -52.49 -0.41 2.07 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.36 9.08 5.52 -40.82 -0.23 8.86 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.12 1.73 7.19 -52.48 -0.38 1.36 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.18 2.10 4.71 -55.22 -0.26 1.84 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -36.95 367.76 -7.40 -44.35 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.79 Total: 5.80 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.68 Total: -6.52 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 1.16 Total: -61.64 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.08 Total: -5.76 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.95 -7.40 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262383286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.809 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds