Wall clock time and date at job start Wed Apr 1 2020 00:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 5 5 O 1.21279 * 119.99507 * 120.00341 * 4 2 1 6 6 N 1.34774 * 120.00020 * 300.00031 * 4 2 1 7 7 C 1.46496 * 119.99544 * 180.02562 * 6 4 2 8 8 C 1.53004 * 117.49519 * 223.74383 * 7 6 4 9 9 C 1.53007 * 117.49623 * 155.08799 * 7 6 4 10 10 N 1.46893 * 109.47050 * 239.99637 * 2 1 3 11 11 C 1.47852 * 111.00034 * 180.84086 * 10 2 1 12 12 C 1.54902 * 104.79621 * 213.63960 * 11 10 2 13 13 C 1.55137 * 101.65584 * 37.07215 * 12 11 10 14 14 H 1.08994 * 110.71189 * 82.72787 * 13 12 11 15 15 N 1.46500 * 110.85361 * 205.89538 * 13 12 11 16 16 C 1.34782 * 119.99779 * 268.67827 * 15 13 12 17 17 O 1.21277 * 119.99970 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99652 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.46791 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00019 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00202 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00332 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00009 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00454 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46955 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47223 * 119.99850 * 24 22 20 27 27 H 1.48489 * 109.47351 * 239.99663 * 24 22 20 28 28 C 1.47444 * 111.00182 * 60.00236 * 10 2 1 29 29 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 32 32 H 0.96994 * 119.99756 * 0.02562 * 6 4 2 33 33 H 1.09001 * 115.55629 * 9.41635 * 7 6 4 34 34 H 1.08995 * 117.50260 * 0.02562 * 8 7 6 35 35 H 1.09006 * 117.49852 * 145.02219 * 8 7 6 36 36 H 1.08998 * 117.49690 * 214.97458 * 9 7 6 37 37 H 1.08997 * 117.49904 * 359.97429 * 9 7 6 38 38 H 1.08997 * 110.37029 * 332.47189 * 11 10 2 39 39 H 1.08995 * 110.37281 * 94.80831 * 11 10 2 40 40 H 1.08998 * 110.99079 * 278.97720 * 12 11 10 41 41 H 1.09006 * 111.02120 * 155.17606 * 12 11 10 42 42 H 0.97006 * 120.00434 * 88.68905 * 15 13 12 43 43 H 1.09006 * 109.47255 * 300.00048 * 18 16 15 44 44 H 1.08995 * 109.47593 * 59.99747 * 18 16 15 45 45 H 0.97004 * 120.00357 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.89077 * 242.66172 * 28 10 2 47 47 H 1.09000 * 109.88632 * 3.84889 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.2028 -1.1616 4.7938 9 6 2.3174 -0.1223 4.9381 10 7 2.0196 -0.6925 -1.1993 11 6 3.4975 -0.7298 -1.2234 12 6 3.8712 -0.6370 -2.7238 13 6 2.7948 0.3461 -3.2546 14 1 3.0897 1.3785 -3.0672 15 7 2.5504 0.1303 -4.6829 16 6 3.2541 0.8242 -5.5994 17 8 4.0899 1.6268 -5.2416 18 6 3.0022 0.6026 -7.0686 19 16 4.0953 1.6727 -8.0361 20 6 3.6026 1.2198 -9.6660 21 1 2.8316 0.4774 -9.8105 22 6 4.2053 1.8170 -10.7644 23 7 5.1446 2.7222 -10.5885 24 14 3.6825 1.3374 -12.4924 25 1 2.6152 0.3075 -12.4187 26 1 3.1662 2.5345 -13.2036 27 1 4.8498 0.7895 -13.2287 28 6 1.5469 -0.0240 -2.4256 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5385 2.5435 33 1 2.9412 -1.7154 3.4745 34 1 0.1860 -0.7941 4.6556 35 1 1.2956 -2.0824 5.3697 36 1 3.1430 -0.3598 5.6089 37 1 2.0343 0.9294 4.8949 38 1 3.9074 0.1195 -0.6770 39 1 3.8604 -1.6660 -0.7992 40 1 3.7849 -1.6094 -3.2086 41 1 4.8726 -0.2262 -2.8527 42 1 1.8820 -0.5119 -4.9691 43 1 3.2007 -0.4398 -7.3181 44 1 1.9637 0.8399 -7.2991 45 1 5.5656 3.1399 -11.3561 46 1 0.9106 -0.7012 -2.9953 47 1 0.9932 0.8783 -2.1660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265271112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:08 Heat of formation + Delta-G solvation = -34.539786 kcal Electronic energy + Delta-G solvation = -26650.913946 eV Core-core repulsion = 22767.947795 eV Total energy + Delta-G solvation = -3882.966151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78511 -39.58807 -38.39027 -37.28650 -34.74186 -33.56825 -32.42900 -32.25793 -29.80198 -28.86014 -27.78134 -25.49417 -24.88000 -22.94068 -22.51075 -21.52019 -21.20834 -20.40749 -20.33061 -17.97977 -17.68595 -17.24541 -16.53902 -16.44839 -15.80025 -15.57256 -15.06622 -14.87127 -14.80481 -14.62178 -14.19946 -13.98221 -13.70057 -13.45220 -13.21880 -13.12853 -12.85473 -12.80770 -12.53253 -12.30974 -12.17525 -12.06419 -11.98033 -11.68025 -11.52345 -11.41373 -11.07020 -11.06312 -11.01968 -10.90463 -10.75217 -10.05236 -9.80598 -9.41428 -9.24222 -9.07714 -8.89142 -8.61647 -8.23255 -6.49964 -6.21802 -3.92247 2.18882 2.47788 3.01431 3.07060 3.21767 3.28063 3.32515 3.38203 3.55509 3.75304 4.17048 4.20428 4.23510 4.36408 4.39616 4.44590 4.51299 4.63076 4.76539 4.88852 5.06327 5.07808 5.10447 5.11817 5.13596 5.24120 5.25409 5.31063 5.40624 5.45009 5.51784 5.58436 5.64313 5.71693 5.88718 5.93018 5.96181 6.05987 6.09074 6.14708 6.57752 6.60465 6.66078 7.02944 7.60062 7.70366 7.82859 8.35548 8.60403 9.23799 10.85694 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.043394 B = 0.001623 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.093183 B =17244.468988 C =17428.432284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 H 0.070 0.930 4 C 0.524 3.476 5 O -0.515 6.515 6 N -0.706 5.706 7 C 0.081 3.919 8 C -0.193 4.193 9 C -0.190 4.190 10 N -0.504 5.504 11 C 0.050 3.950 12 C -0.143 4.143 13 C 0.127 3.873 14 H 0.095 0.905 15 N -0.728 5.728 16 C 0.534 3.466 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.036 3.964 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.087 0.913 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 -6.511 29.870 32.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 H 0.088 0.912 4 C 0.310 3.690 5 O -0.389 6.389 6 N -0.357 5.357 7 C -0.025 4.025 8 C -0.232 4.232 9 C -0.228 4.228 10 N -0.229 5.229 11 C -0.077 4.077 12 C -0.182 4.182 13 C 0.020 3.980 14 H 0.114 0.886 15 N -0.382 5.382 16 C 0.320 3.680 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.092 4.092 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.235 0.765 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.976 -6.270 30.286 32.497 hybrid contribution -1.631 -0.235 -1.501 2.229 sum -11.606 -6.505 28.785 31.711 Atomic orbital electron populations 1.21875 0.91766 1.03766 1.02785 1.21812 0.97478 0.96239 0.89884 0.91226 1.20470 0.79908 0.84647 0.83993 1.90702 1.36562 1.25404 1.86236 1.45374 1.53894 1.31703 1.04731 1.21591 1.00901 0.99559 0.80412 1.23438 0.95884 1.01340 1.02551 1.23396 1.01727 0.97639 1.00079 1.63521 1.10253 1.49492 0.99666 1.23074 0.86068 1.02505 0.96067 1.23181 0.99743 1.00397 0.94875 1.22078 0.94616 1.00406 0.80914 0.88648 1.45944 1.42624 1.44703 1.04975 1.20336 0.80308 0.79724 0.87632 1.90695 1.32640 1.34371 1.81479 1.23531 1.06315 1.06370 0.94175 1.85394 1.47975 1.50865 0.99203 1.22913 1.25912 1.28186 0.91306 0.90855 1.24992 0.94603 0.94584 0.99406 1.70029 1.23902 1.25176 1.31209 0.86114 0.78529 0.78432 0.82405 1.19605 1.20581 1.20561 1.23123 0.96876 0.98289 0.90893 0.90858 0.90900 0.91789 0.76489 0.84440 0.88486 0.87954 0.87809 0.88447 0.93932 0.88336 0.90101 0.90061 0.76581 0.89147 0.89190 0.92243 0.89447 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.96 37.16 0.33 -0.45 16 2 C 0.06 0.45 2.07 -68.86 -0.14 0.30 16 3 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 4 C 0.52 4.74 6.87 -10.98 -0.08 4.67 16 5 O -0.52 -6.63 13.84 5.56 0.08 -6.56 16 6 N -0.71 -4.33 5.46 -53.80 -0.29 -4.62 16 7 C 0.08 0.50 6.43 -67.93 -0.44 0.07 16 8 C -0.19 -0.85 10.46 -26.69 -0.28 -1.13 16 9 C -0.19 -0.79 10.46 -26.69 -0.28 -1.07 16 10 N -0.50 -4.94 4.83 -224.68 -1.09 -6.03 16 11 C 0.05 0.55 5.32 -2.30 -0.01 0.54 16 12 C -0.14 -1.70 6.77 -24.60 -0.17 -1.86 16 13 C 0.13 1.50 3.30 -66.11 -0.22 1.28 16 14 H 0.10 1.30 7.55 -51.93 -0.39 0.91 16 15 N -0.73 -9.58 5.18 -52.04 -0.27 -9.85 16 16 C 0.53 9.83 7.85 -10.98 -0.09 9.74 16 17 O -0.52 -11.64 15.51 5.56 0.09 -11.55 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.04 0.33 5.89 -2.83 -0.02 0.31 16 29 H 0.07 0.37 6.50 -51.93 -0.34 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 32 H 0.40 1.39 8.24 -40.82 -0.34 1.06 16 33 H 0.14 1.08 7.40 -51.93 -0.38 0.69 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.04 0.46 7.77 -51.93 -0.40 0.06 16 39 H 0.10 1.23 6.95 -51.93 -0.36 0.87 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.40 4.11 8.37 -40.82 -0.34 3.77 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.09 0.73 7.72 -51.93 -0.40 0.33 16 47 H 0.07 0.51 6.35 -51.93 -0.33 0.18 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -36.28 396.93 -10.42 -46.70 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.45 Total: 2.24 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.96 Total: -3.40 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.92 Total: -45.95 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.28 -10.42 -46.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.160 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds