Wall clock time and date at job start Wed Apr 1 2020 00:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 5 5 O 1.21279 * 119.99507 * 120.00341 * 4 2 1 6 6 N 1.34774 * 120.00020 * 300.00031 * 4 2 1 7 7 C 1.46496 * 119.99544 * 180.02562 * 6 4 2 8 8 C 1.53004 * 117.49519 * 223.74383 * 7 6 4 9 9 C 1.53007 * 117.49623 * 155.08799 * 7 6 4 10 10 N 1.46893 * 109.47050 * 239.99637 * 2 1 3 11 11 C 1.47852 * 111.00034 * 180.84086 * 10 2 1 12 12 C 1.54902 * 104.79621 * 213.63960 * 11 10 2 13 13 C 1.55137 * 101.65584 * 37.07215 * 12 11 10 14 14 H 1.08994 * 110.71189 * 82.72787 * 13 12 11 15 15 N 1.46500 * 110.85361 * 205.89538 * 13 12 11 16 16 C 1.34782 * 119.99779 * 268.67827 * 15 13 12 17 17 O 1.21277 * 119.99970 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99652 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.46791 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00019 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00202 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00332 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00009 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00454 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46955 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47223 * 119.99850 * 24 22 20 27 27 H 1.48489 * 109.47351 * 239.99663 * 24 22 20 28 28 C 1.47444 * 111.00182 * 60.00236 * 10 2 1 29 29 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 32 32 H 0.96994 * 119.99756 * 0.02562 * 6 4 2 33 33 H 1.09001 * 115.55629 * 9.41635 * 7 6 4 34 34 H 1.08995 * 117.50260 * 0.02562 * 8 7 6 35 35 H 1.09006 * 117.49852 * 145.02219 * 8 7 6 36 36 H 1.08998 * 117.49690 * 214.97458 * 9 7 6 37 37 H 1.08997 * 117.49904 * 359.97429 * 9 7 6 38 38 H 1.08997 * 110.37029 * 332.47189 * 11 10 2 39 39 H 1.08995 * 110.37281 * 94.80831 * 11 10 2 40 40 H 1.08998 * 110.99079 * 278.97720 * 12 11 10 41 41 H 1.09006 * 111.02120 * 155.17606 * 12 11 10 42 42 H 0.97006 * 120.00434 * 88.68905 * 15 13 12 43 43 H 1.09006 * 109.47255 * 300.00048 * 18 16 15 44 44 H 1.08995 * 109.47593 * 59.99747 * 18 16 15 45 45 H 0.97004 * 120.00357 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.89077 * 242.66172 * 28 10 2 47 47 H 1.09000 * 109.88632 * 3.84889 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.2028 -1.1616 4.7938 9 6 2.3174 -0.1223 4.9381 10 7 2.0196 -0.6925 -1.1993 11 6 3.4975 -0.7298 -1.2234 12 6 3.8712 -0.6370 -2.7238 13 6 2.7948 0.3461 -3.2546 14 1 3.0897 1.3785 -3.0672 15 7 2.5504 0.1303 -4.6829 16 6 3.2541 0.8242 -5.5994 17 8 4.0899 1.6268 -5.2416 18 6 3.0022 0.6026 -7.0686 19 16 4.0953 1.6727 -8.0361 20 6 3.6026 1.2198 -9.6660 21 1 2.8316 0.4774 -9.8105 22 6 4.2053 1.8170 -10.7644 23 7 5.1446 2.7222 -10.5885 24 14 3.6825 1.3374 -12.4924 25 1 2.6152 0.3075 -12.4187 26 1 3.1662 2.5345 -13.2036 27 1 4.8498 0.7895 -13.2287 28 6 1.5469 -0.0240 -2.4256 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5385 2.5435 33 1 2.9412 -1.7154 3.4745 34 1 0.1860 -0.7941 4.6556 35 1 1.2956 -2.0824 5.3697 36 1 3.1430 -0.3598 5.6089 37 1 2.0343 0.9294 4.8949 38 1 3.9074 0.1195 -0.6770 39 1 3.8604 -1.6660 -0.7992 40 1 3.7849 -1.6094 -3.2086 41 1 4.8726 -0.2262 -2.8527 42 1 1.8820 -0.5119 -4.9691 43 1 3.2007 -0.4398 -7.3181 44 1 1.9637 0.8399 -7.2991 45 1 5.5656 3.1399 -11.3561 46 1 0.9106 -0.7012 -2.9953 47 1 0.9932 0.8783 -2.1660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265271112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:07 Heat of formation + Delta-G solvation = -62.688355 kcal Electronic energy + Delta-G solvation = -26652.134559 eV Core-core repulsion = 22767.947795 eV Total energy + Delta-G solvation = -3884.186764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54956 -40.71475 -39.35721 -37.90432 -35.76410 -34.58238 -34.36698 -33.05997 -31.13805 -29.64515 -28.84827 -27.63632 -25.53103 -23.27337 -23.14669 -22.52546 -21.95805 -21.64304 -21.06249 -19.84637 -18.52059 -17.95926 -17.73932 -17.52791 -16.87841 -16.69785 -16.36018 -16.22356 -16.05705 -15.50312 -15.25752 -14.90016 -14.77447 -14.55271 -14.41647 -14.20388 -13.71780 -13.67270 -13.53152 -13.30067 -13.15517 -12.99242 -12.90982 -12.62816 -12.59170 -12.44918 -12.44146 -12.29338 -12.22693 -11.89979 -11.70133 -11.46174 -11.15493 -10.96624 -10.77127 -10.26662 -10.10591 -9.75503 -9.37459 -8.66104 -8.34526 -6.12353 1.27159 1.41809 1.47249 1.54232 1.58495 1.59595 1.92963 2.24742 2.29015 2.87429 2.98863 2.99913 3.32200 3.51078 3.56415 3.74468 3.82524 3.96536 3.99084 4.03958 4.06768 4.07401 4.14885 4.23065 4.30307 4.32269 4.52563 4.53346 4.71684 4.76989 4.79566 4.81846 4.90256 4.93783 5.02101 5.03309 5.08944 5.20806 5.25712 5.42787 5.49424 5.52289 5.80752 5.88652 6.20520 6.49945 6.52188 7.07160 7.23442 7.24193 8.74950 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.043394 B = 0.001623 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.093183 B =17244.468988 C =17428.432284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 H 0.084 0.916 4 C 0.519 3.481 5 O -0.563 6.563 6 N -0.690 5.690 7 C 0.053 3.947 8 C -0.183 4.183 9 C -0.176 4.176 10 N -0.513 5.513 11 C 0.062 3.938 12 C -0.140 4.140 13 C 0.126 3.874 14 H 0.078 0.922 15 N -0.701 5.701 16 C 0.537 3.463 17 O -0.565 6.565 18 C -0.129 4.129 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.275 1.275 28 C 0.047 3.953 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.416 0.584 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.102 0.898 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 -7.012 30.534 34.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 H 0.102 0.898 4 C 0.306 3.694 5 O -0.441 6.441 6 N -0.342 5.342 7 C -0.053 4.053 8 C -0.221 4.221 9 C -0.214 4.214 10 N -0.239 5.239 11 C -0.066 4.066 12 C -0.179 4.179 13 C 0.019 3.981 14 H 0.096 0.904 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.443 6.443 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.081 4.081 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.253 0.747 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.085 -6.783 31.009 34.333 hybrid contribution -0.711 -0.126 -1.516 1.679 sum -13.795 -6.909 29.493 33.285 Atomic orbital electron populations 1.21885 0.89611 1.03549 1.04585 1.21948 0.99026 0.96295 0.88284 0.89799 1.20799 0.79352 0.84168 0.85119 1.90688 1.38855 1.27605 1.86930 1.45234 1.53212 1.31747 1.03975 1.21580 1.02036 1.00500 0.81147 1.23495 0.96218 1.01667 1.00735 1.23466 1.01676 0.98188 0.98034 1.63507 1.09103 1.50446 1.00820 1.22839 0.87298 1.01535 0.94904 1.23105 0.98878 1.00177 0.95781 1.22164 0.96361 0.99491 0.80063 0.90360 1.45657 1.41464 1.43472 1.04923 1.20074 0.80272 0.79746 0.87613 1.90689 1.34950 1.36753 1.81931 1.23372 1.05353 1.05282 0.94046 1.85577 1.51462 1.54117 1.01344 1.23247 1.26127 1.28384 0.91583 0.89862 1.26120 0.94383 0.94283 1.04333 1.70191 1.25354 1.26586 1.32708 0.84904 0.78465 0.78478 0.76090 1.17992 1.19901 1.20033 1.23112 0.95341 0.99515 0.90090 0.89857 0.92071 0.89238 0.74705 0.86922 0.87358 0.87664 0.87366 0.87120 0.94086 0.90120 0.90081 0.91967 0.74388 0.87297 0.86909 0.92015 0.87952 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.96 71.98 0.64 -0.45 16 2 C 0.06 0.76 2.07 44.17 0.09 0.85 16 3 H 0.08 0.92 8.10 -2.39 -0.02 0.91 16 4 C 0.52 9.07 6.87 87.66 0.60 9.67 16 5 O -0.56 -14.96 13.84 -3.02 -0.04 -15.00 16 6 N -0.69 -7.57 5.46 -442.52 -2.42 -9.99 16 7 C 0.05 0.63 6.43 45.00 0.29 0.92 16 8 C -0.18 -1.29 10.46 30.62 0.32 -0.97 16 9 C -0.18 -1.15 10.46 30.62 0.32 -0.83 16 10 N -0.51 -9.36 4.83 -864.75 -4.18 -13.54 16 11 C 0.06 1.38 5.32 86.77 0.46 1.84 16 12 C -0.14 -3.35 6.77 31.98 0.22 -3.14 16 13 C 0.13 2.84 3.30 46.17 0.15 2.99 16 14 H 0.08 2.11 7.55 -2.39 -0.02 2.09 16 15 N -0.70 -17.23 5.18 -436.96 -2.26 -19.49 16 16 C 0.54 19.47 7.85 87.66 0.69 20.16 16 17 O -0.57 -25.98 15.51 -3.02 -0.05 -26.02 16 18 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 19 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 20 C -0.55 -31.11 9.50 67.95 0.65 -30.47 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 24 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 C 0.05 0.73 5.89 86.65 0.51 1.24 16 29 H 0.08 0.52 6.50 -2.39 -0.02 0.50 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.09 0.25 7.56 -2.39 -0.02 0.23 16 32 H 0.42 1.86 8.24 -92.71 -0.76 1.10 16 33 H 0.11 1.91 7.40 -2.39 -0.02 1.89 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.04 0.90 7.77 -2.39 -0.02 0.88 16 39 H 0.08 2.11 6.95 -2.39 -0.02 2.10 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.42 7.33 8.37 -92.70 -0.78 6.56 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.10 1.34 7.72 -2.39 -0.02 1.32 16 47 H 0.09 1.03 6.35 -2.39 -0.02 1.02 16 Total: -1.00 -82.62 396.93 -2.50 -85.12 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.55 Total: 20.25 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.85 Total: -1.56 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -8.57 Total: -98.82 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.09 Total: -41.02 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.62 -2.50 -85.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.430 kcal (2) G-P(sol) polarization free energy of solvation -82.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds