Wall clock time and date at job start Wed Apr 1 2020 00:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.50701 * 109.46681 * 120.00272 * 2 1 3 5 5 O 1.21274 * 120.00025 * 119.72511 * 4 2 1 6 6 N 1.34776 * 120.00049 * 299.99059 * 4 2 1 7 7 C 1.46496 * 120.00127 * 180.02562 * 6 4 2 8 8 C 1.53001 * 117.49964 * 223.62407 * 7 6 4 9 9 C 1.52997 * 60.00083 * 252.51229 * 8 7 6 10 10 N 1.46899 * 109.47053 * 239.99928 * 2 1 3 11 11 C 1.48531 * 111.00136 * 54.12728 * 10 2 1 12 12 C 1.54943 * 103.22847 * 159.72191 * 11 10 2 13 13 C 1.54595 * 102.91713 * 322.58823 * 12 11 10 14 14 H 1.08993 * 110.30972 * 263.03724 * 13 12 11 15 15 N 1.46507 * 110.30278 * 140.87180 * 13 12 11 16 16 C 1.34778 * 119.99665 * 89.28951 * 15 13 12 17 17 O 1.21276 * 120.00131 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99664 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47086 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00046 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99884 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00001 * 179.97438 * 20 19 18 23 23 N 1.31637 * 120.00123 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00024 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47406 * 89.99736 * 24 22 20 26 26 H 1.48503 * 109.46997 * 210.00090 * 24 22 20 27 27 H 1.48507 * 109.47176 * 329.99723 * 24 22 20 28 28 C 1.47898 * 111.00350 * 171.52902 * 10 2 1 29 29 H 1.08992 * 109.47681 * 174.25817 * 1 2 3 30 30 H 1.09002 * 109.47036 * 294.25962 * 1 2 3 31 31 H 1.09001 * 109.46658 * 54.25692 * 1 2 3 32 32 H 0.96997 * 119.99760 * 0.02562 * 6 4 2 33 33 H 1.09000 * 115.55041 * 9.33558 * 7 6 4 34 34 H 1.08993 * 117.49895 * 0.02562 * 8 7 6 35 35 H 1.09006 * 117.49392 * 145.02389 * 8 7 6 36 36 H 1.09004 * 117.49950 * 252.50942 * 9 8 7 37 37 H 1.09001 * 117.49837 * 107.49171 * 9 8 7 38 38 H 1.08997 * 110.66873 * 278.15837 * 11 10 2 39 39 H 1.09004 * 110.66750 * 41.29093 * 11 10 2 40 40 H 1.08998 * 110.72403 * 204.23254 * 12 11 10 41 41 H 1.09002 * 110.72116 * 80.94515 * 12 11 10 42 42 H 0.97000 * 120.00191 * 269.27536 * 15 13 12 43 43 H 1.09005 * 109.46785 * 299.98989 * 18 16 15 44 44 H 1.09002 * 109.47594 * 59.99214 * 18 16 15 45 45 H 0.96995 * 119.99638 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.91340 * 333.50728 * 28 10 2 47 47 H 1.08994 * 109.91822 * 94.79950 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7253 -1.6994 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6507 8 6 1.2035 -1.1591 4.7949 9 6 2.3193 -0.1220 4.9376 10 7 2.0197 -0.6925 -1.1994 11 6 1.4310 -0.1058 -2.4304 12 6 2.4103 -0.5588 -3.5424 13 6 3.7883 -0.4677 -2.8476 14 1 4.2733 0.4773 -3.0916 15 7 4.6354 -1.5937 -3.2488 16 6 5.4241 -1.4894 -4.3367 17 8 5.4323 -0.4637 -4.9837 18 6 6.2950 -2.6479 -4.7498 19 16 7.2270 -2.2022 -6.2361 20 6 8.1328 -3.6924 -6.4876 21 1 8.0059 -4.5226 -5.8085 22 6 9.0086 -3.7997 -7.5589 23 7 9.6850 -4.9132 -7.7471 24 14 9.2276 -2.3640 -8.7338 25 1 10.3233 -1.4882 -8.2464 26 1 9.5682 -2.8776 -10.0849 27 1 7.9652 -1.5850 -8.8041 28 6 3.4839 -0.5387 -1.3397 29 1 -0.3634 -1.0224 -0.1028 30 1 -0.3633 0.4222 0.9369 31 1 -0.3633 0.6003 -0.8341 32 1 1.1489 0.5385 2.5435 33 1 2.9400 -1.7166 3.4743 34 1 0.1873 -0.7898 4.6575 35 1 1.2954 -2.0796 5.3714 36 1 3.1452 -0.3602 5.6079 37 1 2.0372 0.9300 4.8942 38 1 0.4336 -0.5074 -2.6091 39 1 1.4025 0.9818 -2.3627 40 1 2.3635 0.1169 -4.3964 41 1 2.1994 -1.5837 -3.8480 42 1 4.6287 -2.4142 -2.7314 43 1 6.9887 -2.8865 -3.9435 44 1 5.6698 -3.5157 -4.9599 45 1 10.2974 -4.9880 -8.4957 46 1 3.8091 0.3801 -0.8517 47 1 3.9914 -1.3964 -0.8984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265271113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:10 Heat of formation + Delta-G solvation = -34.153637 kcal Electronic energy + Delta-G solvation = -26836.289255 eV Core-core repulsion = 22953.339849 eV Total energy + Delta-G solvation = -3882.949406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75432 -39.63239 -38.42433 -37.30929 -34.87810 -33.48719 -32.40544 -32.19835 -29.66614 -29.60440 -27.30396 -25.56497 -25.14238 -22.93405 -22.59576 -21.43433 -21.24123 -20.52336 -20.35261 -17.84544 -17.68457 -17.22270 -16.61170 -16.45139 -15.89056 -15.62795 -14.97814 -14.94798 -14.94100 -14.78786 -14.52346 -13.89722 -13.50439 -13.39954 -13.20552 -13.16721 -12.99208 -12.76479 -12.59991 -12.38264 -12.15901 -12.06324 -11.99729 -11.75252 -11.65502 -11.53551 -11.23043 -11.05908 -10.99529 -10.96882 -10.55736 -10.09740 -9.82614 -9.46743 -9.24271 -8.98680 -8.92954 -8.74999 -8.46229 -6.87775 -6.25435 -3.96787 2.18975 2.47564 2.80784 3.01130 3.32859 3.36349 3.38850 3.52853 3.54550 3.72285 4.11356 4.23305 4.33733 4.36244 4.37944 4.44695 4.45725 4.56986 4.69136 4.79851 4.93743 4.99346 5.02564 5.07832 5.13173 5.13571 5.20900 5.28207 5.34272 5.40785 5.41443 5.52214 5.56570 5.65442 5.71602 5.82817 5.87636 6.00205 6.01877 6.08710 6.47846 6.49899 6.66991 7.02333 7.69497 7.83388 7.97783 8.45859 8.54846 9.20734 10.83844 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.001901 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.230827 B =14726.481684 C =15601.254223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 H 0.070 0.930 4 C 0.522 3.478 5 O -0.512 6.512 6 N -0.706 5.706 7 C 0.081 3.919 8 C -0.193 4.193 9 C -0.190 4.190 10 N -0.493 5.493 11 C 0.037 3.963 12 C -0.134 4.134 13 C 0.138 3.862 14 H 0.095 0.905 15 N -0.726 5.726 16 C 0.532 3.468 17 O -0.522 6.522 18 C -0.124 4.124 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 C 0.034 3.966 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.400 0.600 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.403 0.597 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.270 0.730 46 H 0.050 0.950 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.785 12.754 24.671 35.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 H 0.088 0.912 4 C 0.308 3.692 5 O -0.385 6.385 6 N -0.358 5.358 7 C -0.025 4.025 8 C -0.232 4.232 9 C -0.229 4.229 10 N -0.218 5.218 11 C -0.091 4.091 12 C -0.173 4.173 13 C 0.032 3.968 14 H 0.113 0.887 15 N -0.380 5.380 16 C 0.319 3.681 17 O -0.397 6.397 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 C -0.095 4.095 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.234 0.766 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.238 0.762 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.252 13.076 23.429 34.858 hybrid contribution 0.197 0.105 0.598 0.638 sum -22.055 13.181 24.027 35.178 Atomic orbital electron populations 1.21849 0.91740 1.03977 1.02630 1.21793 0.97434 0.96166 0.90233 0.91238 1.20486 0.80047 0.84764 0.83942 1.90719 1.36510 1.25009 1.86241 1.45378 1.53962 1.31700 1.04767 1.21596 1.00926 0.99558 0.80379 1.23424 0.95827 1.01391 1.02564 1.23385 1.01746 0.97588 1.00146 1.64648 1.05229 1.51603 1.00288 1.23289 0.99362 0.97396 0.89026 1.22959 0.93575 1.03288 0.97526 1.21704 0.91015 0.91404 0.92663 0.88728 1.46060 1.44326 1.17564 1.30097 1.20293 0.79228 0.88994 0.79629 1.90681 1.65954 1.30578 1.52496 1.23286 1.01101 0.99261 1.03828 1.84743 1.52642 1.24528 1.29729 1.22331 1.28036 0.99446 1.17001 0.89366 1.24718 0.94003 0.95975 0.96667 1.69945 1.25954 1.25611 1.30223 0.86728 0.81350 0.83007 0.80710 1.19250 1.19978 1.15936 1.23181 0.88660 1.02302 0.95308 0.90721 0.91762 0.91037 0.76596 0.84386 0.88523 0.87920 0.87785 0.88504 0.89402 0.93348 0.90118 0.89865 0.76196 0.88475 0.88395 0.91983 0.93209 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.68 37.16 0.32 -0.36 16 2 C 0.06 0.40 2.25 -68.86 -0.16 0.24 16 3 H 0.07 0.40 7.86 -51.93 -0.41 -0.01 16 4 C 0.52 4.65 6.94 -10.98 -0.08 4.57 16 5 O -0.51 -6.71 14.55 5.56 0.08 -6.63 16 6 N -0.71 -4.23 5.42 -53.81 -0.29 -4.52 16 7 C 0.08 0.51 6.43 -67.93 -0.44 0.08 16 8 C -0.19 -0.87 10.46 -26.73 -0.28 -1.15 16 9 C -0.19 -0.81 10.45 -26.73 -0.28 -1.09 16 10 N -0.49 -4.58 4.81 -223.89 -1.08 -5.66 16 11 C 0.04 0.30 5.20 -1.90 -0.01 0.29 16 12 C -0.13 -1.42 6.78 -24.87 -0.17 -1.59 16 13 C 0.14 1.65 3.34 -66.57 -0.22 1.43 16 14 H 0.09 1.26 7.56 -51.93 -0.39 0.86 16 15 N -0.73 -9.94 5.06 -52.49 -0.27 -10.21 16 16 C 0.53 9.69 7.85 -10.98 -0.09 9.60 16 17 O -0.52 -11.31 15.51 5.56 0.09 -11.23 16 18 C -0.12 -2.48 6.16 36.01 0.22 -2.25 16 19 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 20 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 21 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 22 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.92 13.97 55.49 0.78 -26.14 16 24 Si 0.86 22.07 27.74 -169.99 -4.71 17.35 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.66 16 28 C 0.03 0.35 5.47 -2.76 -0.02 0.34 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.18 7.41 -51.93 -0.38 -0.21 16 31 H 0.07 0.28 7.16 -51.93 -0.37 -0.09 16 32 H 0.40 1.26 8.18 -40.82 -0.33 0.93 16 33 H 0.14 1.13 7.40 -51.93 -0.38 0.75 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.62 7.77 -51.93 -0.40 0.22 16 39 H 0.05 0.33 8.02 -51.93 -0.42 -0.09 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 42 H 0.40 4.76 8.35 -40.82 -0.34 4.42 16 43 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 44 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.05 0.48 7.59 -51.93 -0.39 0.09 16 47 H 0.10 1.20 6.83 -51.93 -0.35 0.85 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -36.36 395.77 -9.97 -46.33 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.56 Total: 2.53 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.97 Total: -2.13 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.86 Total: -46.53 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.36 -9.97 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.180 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds