Wall clock time and date at job start Wed Apr 1 2020 00:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.50701 * 109.46681 * 120.00272 * 2 1 3 5 5 O 1.21274 * 120.00025 * 119.72511 * 4 2 1 6 6 N 1.34776 * 120.00049 * 299.99059 * 4 2 1 7 7 C 1.46496 * 120.00127 * 180.02562 * 6 4 2 8 8 C 1.53001 * 117.49964 * 223.62407 * 7 6 4 9 9 C 1.52997 * 60.00083 * 252.51229 * 8 7 6 10 10 N 1.46899 * 109.47053 * 239.99928 * 2 1 3 11 11 C 1.48531 * 111.00136 * 54.12728 * 10 2 1 12 12 C 1.54943 * 103.22847 * 159.72191 * 11 10 2 13 13 C 1.54595 * 102.91713 * 322.58823 * 12 11 10 14 14 H 1.08993 * 110.30972 * 263.03724 * 13 12 11 15 15 N 1.46507 * 110.30278 * 140.87180 * 13 12 11 16 16 C 1.34778 * 119.99665 * 89.28951 * 15 13 12 17 17 O 1.21276 * 120.00131 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99664 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47086 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00046 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99884 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00001 * 179.97438 * 20 19 18 23 23 N 1.31637 * 120.00123 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00024 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47406 * 89.99736 * 24 22 20 26 26 H 1.48503 * 109.46997 * 210.00090 * 24 22 20 27 27 H 1.48507 * 109.47176 * 329.99723 * 24 22 20 28 28 C 1.47898 * 111.00350 * 171.52902 * 10 2 1 29 29 H 1.08992 * 109.47681 * 174.25817 * 1 2 3 30 30 H 1.09002 * 109.47036 * 294.25962 * 1 2 3 31 31 H 1.09001 * 109.46658 * 54.25692 * 1 2 3 32 32 H 0.96997 * 119.99760 * 0.02562 * 6 4 2 33 33 H 1.09000 * 115.55041 * 9.33558 * 7 6 4 34 34 H 1.08993 * 117.49895 * 0.02562 * 8 7 6 35 35 H 1.09006 * 117.49392 * 145.02389 * 8 7 6 36 36 H 1.09004 * 117.49950 * 252.50942 * 9 8 7 37 37 H 1.09001 * 117.49837 * 107.49171 * 9 8 7 38 38 H 1.08997 * 110.66873 * 278.15837 * 11 10 2 39 39 H 1.09004 * 110.66750 * 41.29093 * 11 10 2 40 40 H 1.08998 * 110.72403 * 204.23254 * 12 11 10 41 41 H 1.09002 * 110.72116 * 80.94515 * 12 11 10 42 42 H 0.97000 * 120.00191 * 269.27536 * 15 13 12 43 43 H 1.09005 * 109.46785 * 299.98989 * 18 16 15 44 44 H 1.09002 * 109.47594 * 59.99214 * 18 16 15 45 45 H 0.96995 * 119.99638 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.91340 * 333.50728 * 28 10 2 47 47 H 1.08994 * 109.91822 * 94.79950 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7253 -1.6994 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6507 8 6 1.2035 -1.1591 4.7949 9 6 2.3193 -0.1220 4.9376 10 7 2.0197 -0.6925 -1.1994 11 6 1.4310 -0.1058 -2.4304 12 6 2.4103 -0.5588 -3.5424 13 6 3.7883 -0.4677 -2.8476 14 1 4.2733 0.4773 -3.0916 15 7 4.6354 -1.5937 -3.2488 16 6 5.4241 -1.4894 -4.3367 17 8 5.4323 -0.4637 -4.9837 18 6 6.2950 -2.6479 -4.7498 19 16 7.2270 -2.2022 -6.2361 20 6 8.1328 -3.6924 -6.4876 21 1 8.0059 -4.5226 -5.8085 22 6 9.0086 -3.7997 -7.5589 23 7 9.6850 -4.9132 -7.7471 24 14 9.2276 -2.3640 -8.7338 25 1 10.3233 -1.4882 -8.2464 26 1 9.5682 -2.8776 -10.0849 27 1 7.9652 -1.5850 -8.8041 28 6 3.4839 -0.5387 -1.3397 29 1 -0.3634 -1.0224 -0.1028 30 1 -0.3633 0.4222 0.9369 31 1 -0.3633 0.6003 -0.8341 32 1 1.1489 0.5385 2.5435 33 1 2.9400 -1.7166 3.4743 34 1 0.1873 -0.7898 4.6575 35 1 1.2954 -2.0796 5.3714 36 1 3.1452 -0.3602 5.6079 37 1 2.0372 0.9300 4.8942 38 1 0.4336 -0.5074 -2.6091 39 1 1.4025 0.9818 -2.3627 40 1 2.3635 0.1169 -4.3964 41 1 2.1994 -1.5837 -3.8480 42 1 4.6287 -2.4142 -2.7314 43 1 6.9887 -2.8865 -3.9435 44 1 5.6698 -3.5157 -4.9599 45 1 10.2974 -4.9880 -8.4957 46 1 3.8091 0.3801 -0.8517 47 1 3.9914 -1.3964 -0.8984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265271113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:09 Heat of formation + Delta-G solvation = -62.410415 kcal Electronic energy + Delta-G solvation = -26837.514561 eV Core-core repulsion = 22953.339849 eV Total energy + Delta-G solvation = -3884.174712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49533 -40.73566 -39.35398 -37.90497 -35.86773 -34.67877 -34.24930 -33.01349 -31.01236 -30.30935 -28.35682 -27.80563 -25.68272 -23.27410 -23.19082 -22.39128 -22.04134 -21.55488 -21.12229 -19.90166 -18.33056 -18.05844 -17.73275 -17.47557 -17.08964 -16.75876 -16.38203 -16.36082 -15.92652 -15.39378 -15.37808 -15.22895 -14.94470 -14.71593 -14.25064 -14.09015 -13.70379 -13.68025 -13.56152 -13.35024 -13.22220 -13.02150 -12.87505 -12.71027 -12.57391 -12.52711 -12.41514 -12.38561 -12.20869 -11.86849 -11.85466 -11.46921 -11.17520 -11.00626 -10.77373 -10.55558 -10.15424 -9.74579 -9.42459 -9.00243 -8.51852 -6.23023 0.97670 1.31314 1.46172 1.53560 1.55147 1.57146 1.96090 2.20254 2.25844 2.70319 2.86062 2.90719 2.99033 3.42616 3.62965 3.77874 3.83533 3.85624 4.00470 4.06171 4.06879 4.07494 4.17720 4.21449 4.25201 4.31872 4.45630 4.59164 4.72286 4.76561 4.79607 4.82159 4.87087 4.91405 5.00412 5.02706 5.13531 5.20588 5.24024 5.47927 5.52582 5.70240 5.77336 5.89001 6.10926 6.43036 6.54709 6.92806 7.15547 7.26796 8.60705 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.001901 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.230827 B =14726.481684 C =15601.254223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.057 3.943 3 H 0.091 0.909 4 C 0.516 3.484 5 O -0.564 6.564 6 N -0.690 5.690 7 C 0.053 3.947 8 C -0.184 4.184 9 C -0.175 4.175 10 N -0.509 5.509 11 C 0.047 3.953 12 C -0.133 4.133 13 C 0.135 3.865 14 H 0.083 0.917 15 N -0.706 5.706 16 C 0.539 3.461 17 O -0.559 6.559 18 C -0.113 4.113 19 S -0.169 6.169 20 C -0.532 4.532 21 H 0.060 0.940 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.917 3.083 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.236 1.236 28 C 0.045 3.955 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.277 0.723 46 H 0.058 0.942 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.066 15.059 26.000 39.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.108 0.892 4 C 0.303 3.697 5 O -0.442 6.442 6 N -0.342 5.342 7 C -0.053 4.053 8 C -0.222 4.222 9 C -0.213 4.213 10 N -0.234 5.234 11 C -0.080 4.080 12 C -0.172 4.172 13 C 0.029 3.971 14 H 0.101 0.899 15 N -0.359 5.359 16 C 0.325 3.675 17 O -0.437 6.437 18 C -0.264 4.264 19 S 0.057 5.943 20 C -0.679 4.679 21 H 0.078 0.922 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.738 3.262 25 H -0.186 1.186 26 H -0.182 1.182 27 H -0.160 1.160 28 C -0.083 4.083 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.251 0.749 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.587 15.393 24.826 38.181 hybrid contribution 0.820 -0.667 0.393 1.128 sum -23.767 14.726 25.219 37.653 Atomic orbital electron populations 1.21863 0.89667 1.03510 1.04635 1.21904 0.98900 0.96424 0.88276 0.89153 1.20927 0.79370 0.84236 0.85168 1.90700 1.39043 1.27413 1.87000 1.45231 1.53277 1.31756 1.03945 1.21557 1.01999 1.00489 0.81259 1.23480 0.96270 1.01682 1.00792 1.23453 1.01579 0.98237 0.98012 1.64600 1.04251 1.52946 1.01621 1.23279 0.98994 0.98556 0.87182 1.22908 0.93320 1.02708 0.98291 1.21872 0.91211 0.89896 0.94074 0.89859 1.45908 1.42999 1.18629 1.28392 1.19903 0.79450 0.87743 0.80426 1.90669 1.67401 1.31606 1.54062 1.23283 1.01234 1.00622 1.01290 1.84608 1.53234 1.22897 1.33545 1.22477 1.28696 1.00144 1.16605 0.92176 1.25601 0.93697 0.98517 0.98294 1.70025 1.26756 1.27452 1.31262 0.85834 0.81266 0.79828 0.79223 1.18643 1.18213 1.15988 1.22977 0.89831 1.01875 0.93631 0.92312 0.89389 0.89534 0.74676 0.87152 0.87256 0.87858 0.87509 0.86931 0.87936 0.91345 0.90533 0.90911 0.74937 0.87157 0.87030 0.91346 0.92345 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.68 71.98 0.62 -0.26 16 2 C 0.06 0.67 2.25 44.17 0.10 0.77 16 3 H 0.09 0.72 7.86 -2.39 -0.02 0.70 16 4 C 0.52 8.68 6.94 87.66 0.61 9.29 16 5 O -0.56 -15.10 14.55 -3.01 -0.04 -15.15 16 6 N -0.69 -7.15 5.42 -442.55 -2.40 -9.55 16 7 C 0.05 0.63 6.43 44.99 0.29 0.92 16 8 C -0.18 -1.34 10.46 30.59 0.32 -1.02 16 9 C -0.17 -1.15 10.45 30.59 0.32 -0.83 16 10 N -0.51 -8.60 4.81 -862.25 -4.15 -12.75 16 11 C 0.05 0.64 5.20 86.65 0.45 1.09 16 12 C -0.13 -2.65 6.78 31.80 0.22 -2.44 16 13 C 0.13 3.11 3.34 45.87 0.15 3.26 16 14 H 0.08 2.16 7.56 -2.39 -0.02 2.14 16 15 N -0.71 -18.94 5.06 -438.37 -2.22 -21.16 16 16 C 0.54 19.41 7.85 87.66 0.69 20.10 16 17 O -0.56 -24.14 15.51 -3.02 -0.05 -24.19 16 18 C -0.11 -4.50 6.16 71.24 0.44 -4.06 16 19 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 20 C -0.53 -31.73 10.04 67.95 0.68 -31.05 16 21 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 22 C 0.04 2.65 5.50 84.86 0.47 3.11 16 23 N -0.92 -56.80 13.97 21.65 0.30 -56.49 16 24 Si 0.92 45.66 27.74 68.60 1.90 47.57 16 25 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 28 C 0.05 0.91 5.47 86.45 0.47 1.38 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.14 7.41 -2.39 -0.02 0.12 16 31 H 0.09 0.32 7.16 -2.39 -0.02 0.31 16 32 H 0.42 1.42 8.18 -92.71 -0.76 0.66 16 33 H 0.11 1.95 7.40 -2.39 -0.02 1.93 16 34 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.10 1.13 7.77 -2.39 -0.02 1.11 16 39 H 0.07 0.68 8.02 -2.39 -0.02 0.66 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 42 H 0.41 9.51 8.35 -92.71 -0.77 8.74 16 43 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 44 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 45 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.06 1.06 7.59 -2.39 -0.02 1.04 16 47 H 0.08 1.95 6.83 -2.39 -0.02 1.93 16 Total: -1.00 -80.78 395.77 -2.45 -83.23 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.58 Total: 18.04 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.83 Total: 0.26 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -8.46 Total: -99.95 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.09 Total: -39.34 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.57 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -80.78 -2.45 -83.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.819 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds