Wall clock time and date at job start Wed Apr 1 2020 00:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47084 * 240.00161 * 2 1 3 5 5 O 1.21286 * 119.99853 * 240.00416 * 4 2 1 6 6 N 1.34779 * 120.00228 * 59.99677 * 4 2 1 7 7 C 1.46499 * 119.99779 * 180.02562 * 6 4 2 8 8 C 1.53001 * 117.49887 * 223.62478 * 7 6 4 9 9 C 1.53000 * 60.00005 * 252.50970 * 8 7 6 10 10 N 1.46893 * 109.46969 * 119.99954 * 2 1 3 11 11 C 1.48533 * 111.00155 * 306.56720 * 10 2 1 12 12 C 1.54938 * 103.22774 * 200.28117 * 11 10 2 13 13 C 1.54601 * 102.92257 * 37.41374 * 12 11 10 14 14 H 1.08995 * 110.38954 * 219.08423 * 13 12 11 15 15 N 1.46499 * 110.30880 * 96.96073 * 13 12 11 16 16 C 1.34773 * 120.00339 * 89.28275 * 15 13 12 17 17 O 1.21290 * 119.99540 * 0.02562 * 16 15 13 18 18 C 1.50690 * 120.00233 * 179.97438 * 16 15 13 19 19 S 1.81001 * 109.47226 * 180.02562 * 18 16 15 20 20 C 1.76206 * 100.00082 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00074 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99851 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00370 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99929 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47082 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47472 * 119.99779 * 24 22 20 27 27 H 1.48503 * 109.47229 * 240.00099 * 24 22 20 28 28 C 1.47910 * 110.99989 * 189.17124 * 10 2 1 29 29 H 1.08998 * 109.47145 * 185.76386 * 1 2 3 30 30 H 1.08997 * 109.47127 * 305.76992 * 1 2 3 31 31 H 1.09004 * 109.47233 * 65.76626 * 1 2 3 32 32 H 0.96989 * 120.00028 * 0.02562 * 6 4 2 33 33 H 1.09003 * 115.55429 * 9.33285 * 7 6 4 34 34 H 1.09002 * 117.49726 * 359.97438 * 8 7 6 35 35 H 1.09000 * 117.50273 * 145.02348 * 8 7 6 36 36 H 1.08995 * 117.49974 * 252.50381 * 9 8 7 37 37 H 1.09009 * 117.49665 * 107.48773 * 9 8 7 38 38 H 1.09008 * 110.66654 * 318.71463 * 11 10 2 39 39 H 1.08995 * 110.67220 * 81.67775 * 11 10 2 40 40 H 1.09004 * 110.72201 * 279.05323 * 12 11 10 41 41 H 1.09006 * 110.72394 * 155.77184 * 12 11 10 42 42 H 0.97002 * 119.99559 * 269.28493 * 15 13 12 43 43 H 1.09000 * 109.47412 * 60.00288 * 18 16 15 44 44 H 1.09005 * 109.47054 * 300.00198 * 18 16 15 45 45 H 0.96995 * 120.00471 * 179.97438 * 23 22 20 46 46 H 1.08992 * 109.91487 * 26.49121 * 28 10 2 47 47 H 1.09000 * 110.07854 * 265.28639 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9409 -3.6507 8 6 2.7317 -0.0788 -4.7949 9 6 1.3819 -0.7849 -4.9376 10 7 2.0197 -0.6925 1.1994 11 6 1.4182 -0.1166 2.4294 12 6 2.3956 -0.5644 3.5451 13 6 3.7766 -0.4568 2.8586 14 1 4.4149 -1.2884 3.1571 15 7 4.4139 0.8186 3.1955 16 6 5.1965 0.9130 4.2886 17 8 5.3735 -0.0582 4.9933 18 6 5.8525 2.2247 4.6348 19 16 6.8310 2.0299 6.1450 20 6 7.4666 3.6650 6.3108 21 1 7.2071 4.4214 5.5849 22 6 8.2998 3.9811 7.3748 23 7 8.6157 3.0594 8.2598 24 14 8.9731 5.7146 7.5510 25 1 8.4727 6.5558 6.4341 26 1 8.5251 6.2906 8.8443 27 1 10.4571 5.6755 7.5140 28 6 3.4816 -0.5245 1.3487 29 1 -0.3633 -1.0224 0.1032 30 1 -0.3633 0.6007 0.8338 31 1 -0.3634 0.4218 -0.9371 32 1 1.1494 0.5388 -2.5436 33 1 2.6783 -1.9017 -3.4743 34 1 2.7216 1.0025 -4.6579 35 1 3.5689 -0.4722 -5.3715 36 1 1.3312 -1.6429 -5.6080 37 1 0.4842 -0.1682 -4.8942 38 1 1.3793 0.9709 2.3657 39 1 0.4227 -0.5266 2.5992 40 1 2.1931 -1.5924 3.8454 41 1 2.3372 0.1075 4.4015 42 1 4.2726 1.5952 2.6316 43 1 5.0862 2.9835 4.7933 44 1 6.5044 2.5319 3.8170 45 1 9.1984 3.2801 9.0032 46 1 3.8004 0.3993 0.8663 47 1 4.0029 -1.3734 0.9063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265271114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:12 Heat of formation + Delta-G solvation = -34.276486 kcal Electronic energy + Delta-G solvation = -26870.030913 eV Core-core repulsion = 22987.076180 eV Total energy + Delta-G solvation = -3882.954733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74105 -39.62682 -38.34087 -37.28383 -34.80426 -33.44408 -32.43539 -32.13219 -29.59425 -29.53012 -27.33776 -25.47332 -25.11841 -22.91880 -22.59246 -21.47099 -21.24953 -20.59455 -19.95287 -17.87524 -17.64124 -17.20375 -16.57220 -16.38050 -16.17462 -15.33124 -15.09848 -14.87416 -14.80985 -14.72541 -14.40682 -13.96043 -13.73080 -13.36653 -13.13236 -13.08714 -12.89605 -12.61765 -12.55921 -12.27754 -12.14078 -12.03426 -11.90970 -11.63953 -11.53050 -11.48405 -11.07864 -11.04229 -11.03441 -10.99875 -10.75986 -10.07673 -9.81063 -9.40357 -9.22116 -9.08392 -8.92487 -8.70833 -8.23224 -6.50142 -6.22183 -3.92636 2.21097 2.49614 3.01083 3.08512 3.20879 3.27111 3.31332 3.39902 3.55252 3.79841 4.14888 4.19725 4.24854 4.37332 4.40248 4.44298 4.47700 4.60342 4.75884 4.96721 5.00114 5.06012 5.09006 5.13012 5.14891 5.18550 5.27038 5.31846 5.42286 5.43619 5.53548 5.60350 5.62809 5.77866 5.79668 5.87724 6.01632 6.02104 6.08899 6.12942 6.39671 6.53831 6.75174 7.04545 7.59235 7.69141 7.85478 8.34836 8.61605 9.23198 10.85294 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.001903 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.390925 B =14707.172529 C =15501.222416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 H 0.069 0.931 4 C 0.523 3.477 5 O -0.512 6.512 6 N -0.707 5.707 7 C 0.082 3.918 8 C -0.194 4.194 9 C -0.190 4.190 10 N -0.493 5.493 11 C 0.036 3.964 12 C -0.132 4.132 13 C 0.135 3.865 14 H 0.102 0.898 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.037 3.963 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.394 0.606 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.047 0.953 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.990 -3.954 -25.440 32.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 H 0.087 0.913 4 C 0.308 3.692 5 O -0.385 6.385 6 N -0.358 5.358 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.228 4.228 10 N -0.218 5.218 11 C -0.091 4.091 12 C -0.171 4.171 13 C 0.029 3.971 14 H 0.120 0.880 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.092 4.092 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.228 0.772 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.208 -6.919 -24.041 31.541 hybrid contribution 0.080 4.032 -1.142 4.192 sum -19.128 -2.887 -25.183 31.756 Atomic orbital electron populations 1.21857 0.91760 1.03944 1.02665 1.21792 0.97424 0.96126 0.90267 0.91296 1.20496 0.80029 0.84732 0.83936 1.90719 1.36295 1.25273 1.86255 1.45382 1.53912 1.31762 1.04760 1.21592 1.02002 0.98462 0.80394 1.23438 0.97715 0.99572 1.02574 1.23378 0.95516 1.03801 1.00115 1.64674 1.04983 1.51778 1.00330 1.23312 0.99243 0.97428 0.89156 1.22926 0.93681 1.03050 0.97476 1.21726 0.94428 0.87804 0.93097 0.88040 1.46192 1.51353 1.12477 1.28799 1.20313 0.77649 0.90363 0.79786 1.90710 1.60228 1.38578 1.49258 1.23535 1.03385 0.96811 1.06697 1.85417 1.57817 1.16415 1.23619 1.22908 1.34915 0.96194 1.14355 0.90917 1.24993 0.95520 0.98323 0.94773 1.70022 1.34253 1.33086 1.12864 0.86119 0.78670 0.82531 0.78176 1.19654 1.20558 1.20558 1.23201 0.88686 1.02123 0.95148 0.90739 0.91026 0.91756 0.76575 0.84406 0.88495 0.87902 0.87830 0.88495 0.93544 0.89546 0.89721 0.90040 0.77201 0.89326 0.89299 0.92220 0.93479 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.66 37.16 0.32 -0.42 16 2 C 0.06 0.42 2.26 -68.87 -0.16 0.26 16 3 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 4 C 0.52 4.80 6.95 -10.99 -0.08 4.72 16 5 O -0.51 -6.85 14.60 5.55 0.08 -6.77 16 6 N -0.71 -4.41 5.42 -53.80 -0.29 -4.70 16 7 C 0.08 0.53 6.43 -67.93 -0.44 0.09 16 8 C -0.19 -0.95 10.46 -26.73 -0.28 -1.23 16 9 C -0.19 -0.81 10.46 -26.73 -0.28 -1.09 16 10 N -0.49 -4.78 4.81 -223.88 -1.08 -5.86 16 11 C 0.04 0.31 5.17 -1.90 -0.01 0.30 16 12 C -0.13 -1.47 6.78 -24.87 -0.17 -1.64 16 13 C 0.14 1.70 3.34 -66.57 -0.22 1.47 16 14 H 0.10 1.50 7.56 -51.93 -0.39 1.11 16 15 N -0.73 -9.84 5.06 -52.49 -0.27 -10.11 16 16 C 0.53 9.91 7.85 -10.99 -0.09 9.82 16 17 O -0.51 -11.68 15.51 5.55 0.09 -11.59 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 C 0.04 0.40 5.50 -2.75 -0.02 0.38 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.32 7.15 -51.93 -0.37 -0.05 16 31 H 0.06 0.20 7.41 -51.93 -0.38 -0.18 16 32 H 0.40 1.40 8.18 -40.82 -0.33 1.06 16 33 H 0.14 1.13 7.40 -51.93 -0.38 0.75 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.05 0.36 8.02 -51.92 -0.42 -0.06 16 39 H 0.09 0.65 7.77 -51.93 -0.40 0.25 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 42 H 0.39 4.18 8.33 -40.82 -0.34 3.84 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 47 H 0.10 1.29 7.36 -51.93 -0.38 0.91 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -36.40 398.45 -10.48 -46.88 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.53 Total: 2.22 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.99 Total: -3.18 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.90 Total: -46.14 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.40 -10.48 -46.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.606 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds