Wall clock time and date at job start Wed Apr 1 2020 00:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 O 1.21285 * 120.00039 * 239.99931 * 4 2 1 6 6 N 1.34774 * 119.99942 * 59.99862 * 4 2 1 7 7 C 1.46500 * 119.99881 * 180.02562 * 6 4 2 8 8 C 1.52999 * 117.49984 * 223.74304 * 7 6 4 9 9 C 1.53000 * 117.49873 * 155.08545 * 7 6 4 10 10 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 11 11 C 1.47441 * 111.00045 * 179.87296 * 10 2 1 12 12 C 1.54317 * 107.23428 * 123.26022 * 11 10 2 13 13 C 1.55144 * 103.01793 * 22.28300 * 12 11 10 14 14 H 1.08999 * 110.98828 * 82.44210 * 13 12 11 15 15 N 1.46501 * 110.98850 * 206.21891 * 13 12 11 16 16 C 1.34772 * 119.99909 * 273.54480 * 15 13 12 17 17 O 1.21284 * 120.00226 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 15 13 19 19 S 1.80993 * 109.47246 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00071 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99783 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00079 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99924 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99957 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46829 * 60.00367 * 24 22 20 26 26 H 1.48491 * 109.47047 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47128 * 300.00604 * 24 22 20 28 28 C 1.47846 * 111.00254 * 300.71807 * 10 2 1 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00125 * 359.97438 * 6 4 2 33 33 H 1.08998 * 115.55088 * 9.41572 * 7 6 4 34 34 H 1.09004 * 117.49970 * 0.02562 * 8 7 6 35 35 H 1.09007 * 117.49741 * 145.01590 * 8 7 6 36 36 H 1.08999 * 117.50112 * 214.97866 * 9 7 6 37 37 H 1.09000 * 117.49958 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.88638 * 242.66621 * 11 10 2 39 39 H 1.09000 * 109.88931 * 3.85149 * 11 10 2 40 40 H 1.08995 * 110.70855 * 140.66504 * 12 11 10 41 41 H 1.09002 * 110.70335 * 263.73064 * 12 11 10 42 42 H 0.96997 * 119.99971 * 93.54897 * 15 13 12 43 43 H 1.09000 * 109.46561 * 300.00475 * 18 16 15 44 44 H 1.09003 * 109.46852 * 59.99756 * 18 16 15 45 45 H 0.97002 * 119.99988 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.37160 * 332.46537 * 28 10 2 47 47 H 1.08999 * 110.37162 * 94.80456 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1945 -0.9408 -3.6507 8 6 2.7341 -0.0787 -4.7938 9 6 1.3828 -0.7831 -4.9380 10 7 2.0197 -0.6925 1.1994 11 6 3.4936 -0.7148 1.2319 12 6 3.9316 -0.0574 2.5576 13 6 2.6767 -0.2131 3.4563 14 1 2.6416 -1.2037 3.9097 15 7 2.6327 0.8322 4.4818 16 6 3.2775 0.6558 5.6520 17 8 3.8946 -0.3682 5.8560 18 6 3.2318 1.7308 6.7072 19 16 4.1856 1.2001 8.1510 20 6 3.9683 2.6036 9.1940 21 1 3.3806 3.4434 8.8537 22 6 4.5516 2.6294 10.4532 23 7 5.2675 1.6057 10.8680 24 14 4.3219 4.1176 11.5586 25 1 2.8751 4.3144 11.8294 26 1 5.0403 3.8983 12.8395 27 1 4.8679 5.3233 10.8854 28 6 1.5316 -0.0322 2.4289 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1487 0.5386 -2.5435 33 1 2.6769 -1.9022 -3.4745 34 1 2.7266 1.0025 -4.6556 35 1 3.5714 -0.4732 -5.3697 36 1 1.3315 -1.6407 -5.6089 37 1 0.4856 -0.1657 -4.8949 38 1 3.8497 -1.7442 1.1931 39 1 3.8917 -0.1503 0.3888 40 1 4.7818 -0.5867 2.9878 41 1 4.1715 0.9949 2.4050 42 1 2.1394 1.6513 4.3186 43 1 3.6586 2.6507 6.3073 44 1 2.1971 1.9080 7.0007 45 1 5.6749 1.6236 11.7481 46 1 1.3508 1.0268 2.2447 47 1 0.6225 -0.5170 2.7846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265271115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:15 Heat of formation + Delta-G solvation = -35.133592 kcal Electronic energy + Delta-G solvation = -26659.280436 eV Core-core repulsion = 22776.288536 eV Total energy + Delta-G solvation = -3882.991900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80097 -39.58160 -38.39483 -37.29174 -34.73070 -33.57964 -32.43065 -32.27318 -29.80611 -28.89569 -27.80820 -25.49178 -24.85483 -22.94943 -22.50793 -21.50841 -21.27666 -20.68768 -20.08425 -17.89242 -17.57574 -17.25104 -16.61070 -16.45939 -15.97950 -15.22907 -15.13343 -14.83813 -14.80681 -14.57849 -14.56804 -13.84027 -13.74471 -13.60339 -13.26799 -13.13846 -12.82899 -12.74366 -12.56302 -12.33898 -12.21105 -12.14103 -11.88375 -11.62571 -11.53931 -11.45187 -11.06720 -11.04654 -11.04109 -10.85158 -10.76908 -10.07241 -9.82688 -9.42157 -9.24625 -9.06500 -8.91828 -8.63199 -8.23903 -6.49993 -6.21406 -3.92198 2.17929 2.45877 2.98027 3.07638 3.23258 3.26194 3.29256 3.37174 3.52401 3.82043 4.14876 4.20427 4.22363 4.34108 4.38800 4.43390 4.50772 4.61552 4.68539 4.95066 5.03085 5.05605 5.06578 5.13592 5.15360 5.22187 5.23315 5.30009 5.38792 5.41482 5.50788 5.61367 5.63633 5.70553 5.87323 5.90182 5.99669 6.00610 6.12568 6.16631 6.51096 6.58297 6.69449 7.01811 7.58993 7.68485 7.81795 8.34831 8.60626 9.23621 10.85935 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035595 B = 0.001642 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.430602 B =17048.210594 C =17218.709676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 H 0.068 0.932 4 C 0.522 3.478 5 O -0.513 6.513 6 N -0.706 5.706 7 C 0.081 3.919 8 C -0.194 4.194 9 C -0.189 4.189 10 N -0.505 5.505 11 C 0.058 3.942 12 C -0.158 4.158 13 C 0.141 3.859 14 H 0.104 0.896 15 N -0.731 5.731 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.040 3.960 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.269 0.731 46 H 0.053 0.947 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 0.329 -31.650 33.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.052 4.052 3 H 0.086 0.914 4 C 0.308 3.692 5 O -0.386 6.386 6 N -0.357 5.357 7 C -0.025 4.025 8 C -0.233 4.233 9 C -0.228 4.228 10 N -0.230 5.230 11 C -0.070 4.070 12 C -0.198 4.198 13 C 0.035 3.965 14 H 0.122 0.878 15 N -0.385 5.385 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.088 4.088 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.235 0.765 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.238 -2.725 -31.058 32.815 hybrid contribution -1.066 3.921 0.185 4.068 sum -11.304 1.196 -30.873 32.899 Atomic orbital electron populations 1.21837 0.91746 1.03840 1.02727 1.21787 0.97491 0.96049 0.89825 0.91411 1.20482 0.79984 0.84743 0.84001 1.90734 1.36374 1.25290 1.86240 1.45377 1.53839 1.31795 1.04738 1.21594 1.02025 0.98443 0.80403 1.23446 0.97709 0.99564 1.02592 1.23386 0.95495 1.03806 1.00075 1.63451 1.09663 1.50120 0.99751 1.22733 0.86101 1.02205 0.95943 1.23273 0.99545 1.01406 0.95545 1.21934 0.93520 0.93484 0.87553 0.87766 1.45915 1.55565 1.20825 1.16242 1.20318 0.77858 0.88161 0.81689 1.90713 1.40680 1.28590 1.78683 1.23533 1.06097 1.00081 1.00688 1.85419 1.64708 1.26251 1.06837 1.22830 1.38423 1.04242 1.03056 0.90997 1.24986 0.94489 0.97025 0.97024 1.70005 1.31099 1.29578 1.19552 0.86227 0.78477 0.81619 0.79188 1.19943 1.20794 1.19972 1.23263 0.98586 0.97696 0.89292 0.90966 0.91802 0.90825 0.76531 0.84410 0.88513 0.87921 0.87811 0.88461 0.89264 0.93011 0.89691 0.91314 0.76917 0.89289 0.89202 0.92111 0.92865 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.97 37.16 0.33 -0.42 16 2 C 0.06 0.45 2.07 -68.87 -0.14 0.31 16 3 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 4 C 0.52 4.70 6.54 -10.99 -0.07 4.63 16 5 O -0.51 -6.72 14.36 5.55 0.08 -6.64 16 6 N -0.71 -4.23 5.46 -53.81 -0.29 -4.53 16 7 C 0.08 0.50 6.43 -67.93 -0.44 0.06 16 8 C -0.19 -0.87 10.46 -26.70 -0.28 -1.15 16 9 C -0.19 -0.75 10.46 -26.70 -0.28 -1.03 16 10 N -0.50 -5.00 4.83 -224.68 -1.08 -6.08 16 11 C 0.06 0.64 5.23 -2.84 -0.01 0.63 16 12 C -0.16 -1.87 6.64 -24.91 -0.17 -2.04 16 13 C 0.14 1.71 3.31 -65.79 -0.22 1.49 16 14 H 0.10 1.51 7.73 -51.93 -0.40 1.11 16 15 N -0.73 -9.47 5.23 -51.74 -0.27 -9.74 16 16 C 0.53 9.82 7.85 -10.98 -0.09 9.73 16 17 O -0.51 -11.63 15.61 5.55 0.09 -11.54 16 18 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 24 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.04 0.35 5.02 -2.30 -0.01 0.34 16 29 H 0.07 0.34 7.04 -51.93 -0.37 -0.03 16 30 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.40 1.30 8.24 -40.82 -0.34 0.96 16 33 H 0.14 1.09 7.40 -51.93 -0.38 0.70 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 39 H 0.05 0.56 6.91 -51.93 -0.36 0.20 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 3.87 8.52 -40.82 -0.35 3.52 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.05 0.37 7.44 -51.93 -0.39 -0.01 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -36.43 398.82 -10.51 -46.94 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.58 Total: 1.74 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.95 Total: -3.24 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.92 Total: -45.79 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.43 -10.51 -46.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.809 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds