Wall clock time and date at job start Wed Apr 1 2020 00:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 O 1.21285 * 120.00039 * 239.99931 * 4 2 1 6 6 N 1.34774 * 119.99942 * 59.99862 * 4 2 1 7 7 C 1.46500 * 119.99881 * 180.02562 * 6 4 2 8 8 C 1.52999 * 117.49984 * 223.74304 * 7 6 4 9 9 C 1.53000 * 117.49873 * 155.08545 * 7 6 4 10 10 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 11 11 C 1.47441 * 111.00045 * 179.87296 * 10 2 1 12 12 C 1.54317 * 107.23428 * 123.26022 * 11 10 2 13 13 C 1.55144 * 103.01793 * 22.28300 * 12 11 10 14 14 H 1.08999 * 110.98828 * 82.44210 * 13 12 11 15 15 N 1.46501 * 110.98850 * 206.21891 * 13 12 11 16 16 C 1.34772 * 119.99909 * 273.54480 * 15 13 12 17 17 O 1.21284 * 120.00226 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 15 13 19 19 S 1.80993 * 109.47246 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00071 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99783 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00079 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99924 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99957 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46829 * 60.00367 * 24 22 20 26 26 H 1.48491 * 109.47047 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47128 * 300.00604 * 24 22 20 28 28 C 1.47846 * 111.00254 * 300.71807 * 10 2 1 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00125 * 359.97438 * 6 4 2 33 33 H 1.08998 * 115.55088 * 9.41572 * 7 6 4 34 34 H 1.09004 * 117.49970 * 0.02562 * 8 7 6 35 35 H 1.09007 * 117.49741 * 145.01590 * 8 7 6 36 36 H 1.08999 * 117.50112 * 214.97866 * 9 7 6 37 37 H 1.09000 * 117.49958 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.88638 * 242.66621 * 11 10 2 39 39 H 1.09000 * 109.88931 * 3.85149 * 11 10 2 40 40 H 1.08995 * 110.70855 * 140.66504 * 12 11 10 41 41 H 1.09002 * 110.70335 * 263.73064 * 12 11 10 42 42 H 0.96997 * 119.99971 * 93.54897 * 15 13 12 43 43 H 1.09000 * 109.46561 * 300.00475 * 18 16 15 44 44 H 1.09003 * 109.46852 * 59.99756 * 18 16 15 45 45 H 0.97002 * 119.99988 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.37160 * 332.46537 * 28 10 2 47 47 H 1.08999 * 110.37162 * 94.80456 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1945 -0.9408 -3.6507 8 6 2.7341 -0.0787 -4.7938 9 6 1.3828 -0.7831 -4.9380 10 7 2.0197 -0.6925 1.1994 11 6 3.4936 -0.7148 1.2319 12 6 3.9316 -0.0574 2.5576 13 6 2.6767 -0.2131 3.4563 14 1 2.6416 -1.2037 3.9097 15 7 2.6327 0.8322 4.4818 16 6 3.2775 0.6558 5.6520 17 8 3.8946 -0.3682 5.8560 18 6 3.2318 1.7308 6.7072 19 16 4.1856 1.2001 8.1510 20 6 3.9683 2.6036 9.1940 21 1 3.3806 3.4434 8.8537 22 6 4.5516 2.6294 10.4532 23 7 5.2675 1.6057 10.8680 24 14 4.3219 4.1176 11.5586 25 1 2.8751 4.3144 11.8294 26 1 5.0403 3.8983 12.8395 27 1 4.8679 5.3233 10.8854 28 6 1.5316 -0.0322 2.4289 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1487 0.5386 -2.5435 33 1 2.6769 -1.9022 -3.4745 34 1 2.7266 1.0025 -4.6556 35 1 3.5714 -0.4732 -5.3697 36 1 1.3315 -1.6407 -5.6089 37 1 0.4856 -0.1657 -4.8949 38 1 3.8497 -1.7442 1.1931 39 1 3.8917 -0.1503 0.3888 40 1 4.7818 -0.5867 2.9878 41 1 4.1715 0.9949 2.4050 42 1 2.1394 1.6513 4.3186 43 1 3.6586 2.6507 6.3073 44 1 2.1971 1.9080 7.0007 45 1 5.6749 1.6236 11.7481 46 1 1.3508 1.0268 2.2447 47 1 0.6225 -0.5170 2.7846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265271115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:14 Heat of formation + Delta-G solvation = -63.847052 kcal Electronic energy + Delta-G solvation = -26660.525545 eV Core-core repulsion = 22776.288536 eV Total energy + Delta-G solvation = -3884.237009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55538 -40.71137 -39.35754 -37.90699 -35.75855 -34.57690 -34.37058 -33.06056 -31.13450 -29.68043 -28.85998 -27.62866 -25.48504 -23.27251 -23.14552 -22.54527 -22.02856 -21.67440 -21.01423 -19.83228 -18.25362 -17.98440 -17.94724 -17.24307 -16.95988 -16.86641 -16.32190 -16.22375 -15.93001 -15.55026 -15.23723 -15.12811 -14.68821 -14.61343 -14.36426 -14.32735 -13.74345 -13.67424 -13.45850 -13.21441 -13.16092 -13.00252 -12.85600 -12.62904 -12.61971 -12.46514 -12.41240 -12.34109 -12.24240 -11.82885 -11.73081 -11.46778 -11.11880 -10.97947 -10.77038 -10.26296 -10.14386 -9.74785 -9.36554 -8.66019 -8.33401 -6.11848 1.26783 1.44857 1.47133 1.54686 1.56630 1.60418 1.91690 2.23078 2.29126 2.91740 2.98882 3.00754 3.33125 3.46749 3.56703 3.76743 3.83305 3.91194 3.99901 4.05087 4.06798 4.07449 4.16859 4.23654 4.28424 4.33264 4.50861 4.52271 4.76288 4.76795 4.80072 4.82404 4.88867 4.92290 5.01523 5.02870 5.14859 5.20654 5.27875 5.42404 5.43433 5.51533 5.82347 5.90426 6.20510 6.50510 6.53522 7.07672 7.24584 7.25512 8.75542 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035595 B = 0.001642 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.430602 B =17048.210594 C =17218.709676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 H 0.092 0.908 4 C 0.516 3.484 5 O -0.566 6.566 6 N -0.689 5.689 7 C 0.053 3.947 8 C -0.187 4.187 9 C -0.171 4.171 10 N -0.522 5.522 11 C 0.071 3.929 12 C -0.152 4.152 13 C 0.137 3.863 14 H 0.074 0.926 15 N -0.701 5.701 16 C 0.536 3.464 17 O -0.565 6.565 18 C -0.128 4.128 19 S -0.155 6.155 20 C -0.547 4.547 21 H 0.085 0.915 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.262 1.262 28 C 0.054 3.946 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.419 0.581 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.449 3.885 -33.517 36.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 H 0.110 0.890 4 C 0.303 3.697 5 O -0.444 6.444 6 N -0.341 5.341 7 C -0.053 4.053 8 C -0.225 4.225 9 C -0.209 4.209 10 N -0.248 5.248 11 C -0.057 4.057 12 C -0.192 4.192 13 C 0.031 3.969 14 H 0.092 0.908 15 N -0.355 5.355 16 C 0.322 3.678 17 O -0.442 6.442 18 C -0.279 4.279 19 S 0.072 5.928 20 C -0.695 4.695 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.074 4.074 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.254 0.746 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.257 0.743 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.041 0.895 -33.007 35.501 hybrid contribution -0.255 2.766 0.570 2.836 sum -13.297 3.661 -32.437 35.247 Atomic orbital electron populations 1.21863 0.89661 1.03383 1.04783 1.21917 0.98929 0.96414 0.87759 0.89016 1.20890 0.79343 0.84217 0.85246 1.90722 1.38934 1.27706 1.86994 1.45220 1.53118 1.31836 1.03892 1.21567 1.04261 0.98248 0.81240 1.23499 0.98215 0.99869 1.00965 1.23461 0.95766 1.03870 0.97804 1.63378 1.08496 1.51681 1.01201 1.22460 0.87390 1.00460 0.95379 1.23183 0.98474 1.01814 0.95743 1.21959 0.95515 0.91750 0.87636 0.90777 1.45556 1.53764 1.21755 1.14436 1.20112 0.77932 0.87012 0.82787 1.90709 1.43261 1.30431 1.79848 1.23362 1.05877 1.00984 0.97662 1.85647 1.67359 1.28295 1.11485 1.23186 1.38522 1.04304 1.03463 0.89732 1.26138 0.93841 1.00417 0.98765 1.70183 1.32386 1.32157 1.20116 0.84997 0.78995 0.77288 0.76673 1.18557 1.20536 1.18632 1.23213 0.96986 0.99734 0.87469 0.89629 0.89045 0.92544 0.74600 0.87101 0.87479 0.87850 0.87339 0.86814 0.92124 0.92652 0.92501 0.89914 0.74319 0.87049 0.86881 0.92036 0.89562 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.97 71.98 0.65 -0.32 16 2 C 0.06 0.76 2.07 44.17 0.09 0.85 16 3 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 4 C 0.52 8.85 6.54 87.66 0.57 9.42 16 5 O -0.57 -15.45 14.36 -3.05 -0.04 -15.49 16 6 N -0.69 -7.10 5.46 -442.54 -2.42 -9.52 16 7 C 0.05 0.61 6.43 44.99 0.29 0.90 16 8 C -0.19 -1.35 10.46 30.62 0.32 -1.03 16 9 C -0.17 -1.00 10.46 30.62 0.32 -0.68 16 10 N -0.52 -9.68 4.83 -864.77 -4.18 -13.86 16 11 C 0.07 1.61 5.23 86.65 0.45 2.06 16 12 C -0.15 -3.62 6.64 31.78 0.21 -3.41 16 13 C 0.14 3.21 3.31 46.38 0.15 3.36 16 14 H 0.07 2.24 7.73 -2.39 -0.02 2.22 16 15 N -0.70 -16.75 5.23 -435.99 -2.28 -19.03 16 16 C 0.54 19.45 7.85 87.66 0.69 20.14 16 17 O -0.56 -26.52 15.61 -3.04 -0.05 -26.56 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 20 C -0.55 -31.05 9.50 67.95 0.65 -30.40 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 24 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 28 C 0.05 0.81 5.02 86.77 0.44 1.24 16 29 H 0.08 0.40 7.04 -2.39 -0.02 0.39 16 30 H 0.09 0.14 7.56 -2.39 -0.02 0.12 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.42 1.39 8.24 -92.71 -0.76 0.62 16 33 H 0.11 1.90 7.40 -2.39 -0.02 1.88 16 34 H 0.11 0.56 8.14 -2.38 -0.02 0.55 16 35 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 39 H 0.06 1.19 6.91 -2.39 -0.02 1.18 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.42 6.48 8.52 -92.71 -0.79 5.69 16 43 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.09 0.77 7.44 -2.39 -0.02 0.75 16 47 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -85.07 398.82 -2.64 -87.71 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.56 Total: 18.27 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.73 Total: -1.14 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -8.59 Total: -98.35 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.09 Total: -42.05 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.07 -2.64 -87.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.867 kcal (2) G-P(sol) polarization free energy of solvation -85.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds