Wall clock time and date at job start Wed Apr 1 2020 00:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99787 * 2 1 4 4 N 1.46496 * 109.47353 * 125.00131 * 3 2 1 5 5 C 1.34774 * 120.00339 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99971 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00164 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.46456 * 299.99542 * 7 5 4 9 9 C 1.52997 * 109.47238 * 59.99708 * 7 5 4 10 10 N 1.46894 * 109.47162 * 180.02562 * 7 5 4 11 11 C 1.47903 * 111.00557 * 59.87087 * 10 7 5 12 12 C 1.53991 * 107.05852 * 214.16106 * 11 10 7 13 13 C 1.54595 * 105.14392 * 1.21853 * 12 11 10 14 14 H 1.08995 * 110.72663 * 263.60224 * 13 12 11 15 15 N 1.46500 * 110.72630 * 140.49473 * 13 12 11 16 16 C 1.34778 * 119.99739 * 86.45247 * 15 13 12 17 17 O 1.21279 * 119.99973 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99997 * 180.02562 * 16 15 13 19 19 S 1.80996 * 109.47107 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99894 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99824 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99717 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99504 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00175 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46940 * 90.00211 * 24 22 20 26 26 H 1.48507 * 109.47036 * 209.99736 * 24 22 20 27 27 H 1.48494 * 109.47309 * 329.99965 * 24 22 20 28 28 C 1.48542 * 110.99810 * 302.47310 * 10 7 5 29 29 H 1.07995 * 119.99619 * 0.02562 * 1 2 3 30 30 H 1.07991 * 119.99839 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99619 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47730 * 4.99821 * 3 2 1 33 33 H 1.09001 * 109.47066 * 245.00166 * 3 2 1 34 34 H 0.97005 * 119.99865 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 9 7 5 36 36 H 1.09001 * 109.46832 * 60.00314 * 9 7 5 37 37 H 1.09004 * 109.47261 * 300.00295 * 9 7 5 38 38 H 1.09005 * 109.91106 * 333.50804 * 11 10 7 39 39 H 1.08996 * 109.91682 * 94.80482 * 11 10 7 40 40 H 1.08996 * 110.31323 * 120.14086 * 12 11 10 41 41 H 1.09004 * 110.30411 * 242.30516 * 12 11 10 42 42 H 0.96997 * 119.99924 * 266.46373 * 15 13 12 43 43 H 1.08997 * 109.46832 * 300.00486 * 18 16 15 44 44 H 1.09001 * 109.47004 * 60.00101 * 18 16 15 45 45 H 0.97009 * 120.00089 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.66744 * 278.15832 * 28 10 7 47 47 H 1.09002 * 110.66638 * 41.29025 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.7790 2.4087 1.3328 6 8 3.7158 3.3552 0.5772 7 6 4.7364 2.4360 2.4964 8 1 4.1788 2.3388 3.4279 9 6 5.7255 1.2756 2.3704 10 7 5.4707 3.7082 2.4964 11 6 4.5443 4.8551 2.6143 12 6 5.1455 6.0081 1.7895 13 6 6.4437 5.4331 1.1779 14 1 7.3077 5.6991 1.7867 15 7 6.6191 5.9000 -0.1996 16 6 7.2308 7.0767 -0.4395 17 8 7.6366 7.7488 0.4850 18 6 7.4107 7.5574 -1.8564 19 16 8.2602 9.1556 -1.8481 20 6 8.3349 9.4714 -3.5800 21 1 7.9193 8.7589 -4.2772 22 6 8.9277 10.6358 -4.0481 23 7 8.9839 10.8715 -5.3419 24 14 9.6458 11.8685 -2.8421 25 1 11.0715 11.5397 -2.5883 26 1 9.5473 13.2355 -3.4139 27 1 8.8895 11.8102 -1.5655 28 6 6.1965 3.9040 1.2152 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0452 0.5744 1.7351 35 1 6.4177 1.2951 3.2122 36 1 6.2830 1.3730 1.4388 37 1 5.1803 0.3317 2.3706 38 1 3.5662 4.5847 2.2164 39 1 4.4538 5.1535 3.6587 40 1 4.4562 6.3084 1.0003 41 1 5.3748 6.8558 2.4353 42 1 6.2947 5.3624 -0.9389 43 1 8.0054 6.8331 -2.4130 44 1 6.4349 7.6667 -2.3296 45 1 9.3979 11.6855 -5.6691 46 1 7.1418 3.3615 1.2218 47 1 5.5793 3.5934 0.3722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:58 Heat of formation + Delta-G solvation = -35.529376 kcal Electronic energy + Delta-G solvation = -27220.019783 eV Core-core repulsion = 23337.010721 eV Total energy + Delta-G solvation = -3883.009062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18628 -39.37104 -38.00041 -36.18637 -34.77207 -33.54515 -32.42483 -32.37889 -29.85089 -28.85156 -27.78773 -26.88397 -25.56369 -23.96779 -21.85029 -21.32658 -21.07694 -20.27006 -19.84239 -17.85506 -17.63884 -17.12986 -16.51266 -16.29382 -16.17468 -15.72611 -14.95844 -14.94433 -14.81305 -14.61152 -14.49863 -14.22529 -13.74624 -13.62872 -13.28136 -13.17305 -12.87813 -12.75602 -12.73966 -12.51927 -12.26736 -11.77244 -11.75030 -11.66365 -11.57699 -11.30948 -11.21542 -10.96894 -10.85272 -10.55021 -10.50749 -10.23667 -9.81428 -9.49243 -9.42833 -8.96627 -8.83794 -8.57861 -8.44355 -6.86215 -6.24762 -3.95773 1.47172 2.12102 2.81629 2.83352 3.06938 3.28791 3.36911 3.54587 3.58321 3.85789 4.14616 4.27227 4.37352 4.43198 4.47112 4.47745 4.64086 4.82260 4.86499 4.97756 5.04804 5.12065 5.14323 5.19330 5.24411 5.27129 5.31797 5.36974 5.47233 5.54847 5.63048 5.78171 5.82894 5.84643 5.88667 5.91585 6.08070 6.08612 6.10674 6.16015 6.45083 6.55547 6.77485 6.97091 7.70577 7.75040 7.98438 8.46141 8.60541 9.21580 10.84501 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002084 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.357167 B =13429.621346 C =14425.351448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.144 3.856 4 N -0.726 5.726 5 C 0.483 3.517 6 O -0.525 6.525 7 C 0.055 3.945 8 H 0.111 0.889 9 C -0.141 4.141 10 N -0.486 5.486 11 C 0.035 3.965 12 C -0.135 4.135 13 C 0.151 3.849 14 H 0.097 0.903 15 N -0.727 5.727 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 C 0.014 3.986 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.270 0.730 46 H 0.082 0.918 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 -27.457 16.632 35.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.020 3.980 4 N -0.379 5.379 5 C 0.268 3.732 6 O -0.402 6.402 7 C -0.059 4.059 8 H 0.128 0.872 9 C -0.199 4.199 10 N -0.209 5.209 11 C -0.092 4.092 12 C -0.174 4.174 13 C 0.045 3.955 14 H 0.115 0.885 15 N -0.381 5.381 16 C 0.318 3.682 17 O -0.394 6.394 18 C -0.274 4.274 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 C -0.114 4.114 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.233 0.767 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.504 -25.520 17.925 34.394 hybrid contribution -0.998 -0.890 -1.702 2.165 sum -15.502 -26.410 16.223 34.655 Atomic orbital electron populations 1.24015 0.95811 1.02549 0.97774 1.22994 0.96257 0.98043 1.02430 1.20426 0.91922 0.95609 0.89992 1.46208 1.40823 1.20174 1.30698 1.22114 0.81272 0.82233 0.87579 1.90713 1.67379 1.34835 1.47289 1.22068 0.93865 0.93418 0.96508 0.87160 1.21797 0.99053 0.95117 1.03939 1.65150 1.22906 1.00341 1.32485 1.22917 0.95754 0.90345 1.00223 1.22719 0.97114 0.97807 0.99745 1.21624 0.98297 0.92183 0.83378 0.88485 1.45928 1.61626 1.22482 1.08014 1.20255 0.76532 0.80316 0.91084 1.90689 1.48231 1.54815 1.45669 1.23281 1.05293 1.03291 0.95574 1.84764 1.75857 1.18965 1.11946 1.22334 1.44978 1.10294 0.89197 0.89419 1.24718 0.94437 0.97119 0.95101 1.69944 1.42999 1.26506 1.12350 0.86726 0.81177 0.80867 0.83031 1.19220 1.19988 1.15900 1.23723 0.99126 0.95852 0.92661 0.88116 0.87786 0.86659 0.91032 0.90541 0.76470 0.90161 0.91797 0.91796 0.92130 0.90645 0.90802 0.90698 0.76661 0.88564 0.88531 0.91994 0.89963 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 14.32 29.01 0.42 -0.19 16 2 C -0.18 -0.71 9.63 -36.03 -0.35 -1.06 16 3 C 0.14 0.85 6.11 -5.20 -0.03 0.82 16 4 N -0.73 -3.91 5.44 -61.48 -0.33 -4.24 16 5 C 0.48 3.87 6.04 -10.98 -0.07 3.81 16 6 O -0.53 -6.16 11.75 5.56 0.07 -6.09 16 7 C 0.05 0.36 2.85 -68.87 -0.20 0.17 16 8 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 9 C -0.14 -0.67 9.00 37.16 0.33 -0.34 16 10 N -0.49 -4.59 5.30 -223.88 -1.19 -5.78 16 11 C 0.04 0.37 6.00 -2.76 -0.02 0.35 16 12 C -0.13 -1.74 6.67 -25.38 -0.17 -1.91 16 13 C 0.15 2.01 3.34 -66.07 -0.22 1.79 16 14 H 0.10 1.46 7.69 -51.93 -0.40 1.06 16 15 N -0.73 -10.52 5.15 -52.00 -0.27 -10.78 16 16 C 0.53 10.07 7.84 -10.98 -0.09 9.98 16 17 O -0.52 -11.71 15.59 5.56 0.09 -11.62 16 18 C -0.12 -2.52 6.16 36.01 0.22 -2.30 16 19 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 20 C -0.52 -15.36 10.04 30.94 0.31 -15.05 16 21 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16 22 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -27.05 13.97 55.49 0.78 -26.28 16 24 Si 0.86 22.25 27.74 -169.99 -4.71 17.54 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.24 -6.11 6.74 56.52 0.38 -5.73 16 28 C 0.01 0.15 4.73 -1.89 -0.01 0.14 16 29 H 0.10 0.38 7.84 -52.49 -0.41 -0.03 16 30 H 0.10 0.27 8.06 -52.49 -0.42 -0.16 16 31 H 0.12 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 1.10 7.88 -40.82 -0.32 0.77 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 7.00 -51.93 -0.36 0.01 16 37 H 0.06 0.16 7.56 -51.93 -0.39 -0.23 16 38 H 0.06 0.68 5.65 -51.93 -0.29 0.38 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.40 4.91 8.54 -40.82 -0.35 4.56 16 43 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 44 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 47 H 0.08 0.95 5.04 -51.93 -0.26 0.69 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -36.03 392.84 -9.00 -45.03 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.40 Total: 3.06 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.01 Total: -47.08 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.15 Total: -17.71 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.03 -9.00 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.504 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds