Wall clock time and date at job start Wed Apr 1 2020 00:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99787 * 2 1 4 4 N 1.46496 * 109.47353 * 125.00131 * 3 2 1 5 5 C 1.34774 * 120.00339 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99971 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00164 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.46456 * 299.99542 * 7 5 4 9 9 C 1.52997 * 109.47238 * 59.99708 * 7 5 4 10 10 N 1.46894 * 109.47162 * 180.02562 * 7 5 4 11 11 C 1.47903 * 111.00557 * 59.87087 * 10 7 5 12 12 C 1.53991 * 107.05852 * 214.16106 * 11 10 7 13 13 C 1.54595 * 105.14392 * 1.21853 * 12 11 10 14 14 H 1.08995 * 110.72663 * 263.60224 * 13 12 11 15 15 N 1.46500 * 110.72630 * 140.49473 * 13 12 11 16 16 C 1.34778 * 119.99739 * 86.45247 * 15 13 12 17 17 O 1.21279 * 119.99973 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99997 * 180.02562 * 16 15 13 19 19 S 1.80996 * 109.47107 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99894 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99824 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99717 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99504 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00175 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46940 * 90.00211 * 24 22 20 26 26 H 1.48507 * 109.47036 * 209.99736 * 24 22 20 27 27 H 1.48494 * 109.47309 * 329.99965 * 24 22 20 28 28 C 1.48542 * 110.99810 * 302.47310 * 10 7 5 29 29 H 1.07995 * 119.99619 * 0.02562 * 1 2 3 30 30 H 1.07991 * 119.99839 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99619 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47730 * 4.99821 * 3 2 1 33 33 H 1.09001 * 109.47066 * 245.00166 * 3 2 1 34 34 H 0.97005 * 119.99865 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 9 7 5 36 36 H 1.09001 * 109.46832 * 60.00314 * 9 7 5 37 37 H 1.09004 * 109.47261 * 300.00295 * 9 7 5 38 38 H 1.09005 * 109.91106 * 333.50804 * 11 10 7 39 39 H 1.08996 * 109.91682 * 94.80482 * 11 10 7 40 40 H 1.08996 * 110.31323 * 120.14086 * 12 11 10 41 41 H 1.09004 * 110.30411 * 242.30516 * 12 11 10 42 42 H 0.96997 * 119.99924 * 266.46373 * 15 13 12 43 43 H 1.08997 * 109.46832 * 300.00486 * 18 16 15 44 44 H 1.09001 * 109.47004 * 60.00101 * 18 16 15 45 45 H 0.97009 * 120.00089 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.66744 * 278.15832 * 28 10 7 47 47 H 1.09002 * 110.66638 * 41.29025 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.7790 2.4087 1.3328 6 8 3.7158 3.3552 0.5772 7 6 4.7364 2.4360 2.4964 8 1 4.1788 2.3388 3.4279 9 6 5.7255 1.2756 2.3704 10 7 5.4707 3.7082 2.4964 11 6 4.5443 4.8551 2.6143 12 6 5.1455 6.0081 1.7895 13 6 6.4437 5.4331 1.1779 14 1 7.3077 5.6991 1.7867 15 7 6.6191 5.9000 -0.1996 16 6 7.2308 7.0767 -0.4395 17 8 7.6366 7.7488 0.4850 18 6 7.4107 7.5574 -1.8564 19 16 8.2602 9.1556 -1.8481 20 6 8.3349 9.4714 -3.5800 21 1 7.9193 8.7589 -4.2772 22 6 8.9277 10.6358 -4.0481 23 7 8.9839 10.8715 -5.3419 24 14 9.6458 11.8685 -2.8421 25 1 11.0715 11.5397 -2.5883 26 1 9.5473 13.2355 -3.4139 27 1 8.8895 11.8102 -1.5655 28 6 6.1965 3.9040 1.2152 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0452 0.5744 1.7351 35 1 6.4177 1.2951 3.2122 36 1 6.2830 1.3730 1.4388 37 1 5.1803 0.3317 2.3706 38 1 3.5662 4.5847 2.2164 39 1 4.4538 5.1535 3.6587 40 1 4.4562 6.3084 1.0003 41 1 5.3748 6.8558 2.4353 42 1 6.2947 5.3624 -0.9389 43 1 8.0054 6.8331 -2.4130 44 1 6.4349 7.6667 -2.3296 45 1 9.3979 11.6855 -5.6691 46 1 7.1418 3.3615 1.2218 47 1 5.5793 3.5934 0.3722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:57 Heat of formation + Delta-G solvation = -64.053538 kcal Electronic energy + Delta-G solvation = -27221.256684 eV Core-core repulsion = 23337.010721 eV Total energy + Delta-G solvation = -3884.245963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91563 -40.68845 -38.92872 -36.75520 -35.77643 -34.68599 -34.25680 -33.17078 -31.22813 -29.66489 -28.90133 -27.84737 -27.34779 -24.58955 -22.67632 -22.52474 -21.59623 -21.38150 -20.47923 -19.90063 -18.24115 -18.01249 -17.96650 -17.21730 -17.05685 -16.74949 -16.70393 -16.26969 -16.01290 -15.49250 -15.33809 -15.16580 -14.93769 -14.86242 -14.50625 -14.20655 -13.99811 -13.71588 -13.56324 -13.35876 -13.30162 -13.07548 -13.01432 -12.82281 -12.72340 -12.46642 -12.31411 -12.08595 -12.04452 -11.87200 -11.69938 -11.30436 -11.18044 -11.03687 -10.60460 -10.55894 -10.15988 -10.03635 -9.32627 -9.01159 -8.52597 -6.23693 0.96511 1.15736 1.30748 1.45635 1.52441 1.52959 1.54353 2.14186 2.24796 2.34793 2.68343 2.85369 2.95215 3.49376 3.65829 3.77068 3.85785 3.89468 4.02800 4.12777 4.15508 4.19657 4.22040 4.33125 4.41486 4.44011 4.53865 4.64389 4.71969 4.82810 4.83959 4.89232 4.96977 4.98857 5.05170 5.11685 5.28264 5.35663 5.41780 5.62328 5.69639 5.74131 5.75683 5.85285 6.10046 6.42439 6.50550 6.92232 7.15377 7.18576 8.59883 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002084 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.357167 B =13429.621346 C =14425.351448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.145 3.855 4 N -0.710 5.710 5 C 0.480 3.520 6 O -0.568 6.568 7 C 0.055 3.945 8 H 0.134 0.866 9 C -0.137 4.137 10 N -0.487 5.487 11 C 0.044 3.956 12 C -0.133 4.133 13 C 0.146 3.854 14 H 0.081 0.919 15 N -0.705 5.705 16 C 0.538 3.462 17 O -0.559 6.559 18 C -0.111 4.111 19 S -0.171 6.171 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.045 3.955 23 N -0.916 5.916 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.238 1.238 28 C 0.027 3.973 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.412 0.588 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.277 0.723 46 H 0.094 0.906 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.154 -29.856 18.413 38.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.021 3.979 4 N -0.363 5.363 5 C 0.266 3.734 6 O -0.448 6.448 7 C -0.057 4.057 8 H 0.151 0.849 9 C -0.195 4.195 10 N -0.210 5.210 11 C -0.084 4.084 12 C -0.173 4.173 13 C 0.041 3.959 14 H 0.099 0.901 15 N -0.358 5.358 16 C 0.323 3.677 17 O -0.437 6.437 18 C -0.262 4.262 19 S 0.055 5.945 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.162 1.162 28 C -0.101 4.101 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.249 0.751 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.125 -28.006 19.710 37.438 hybrid contribution -0.948 -0.318 -2.267 2.477 sum -16.073 -28.325 17.444 36.945 Atomic orbital electron populations 1.24167 0.95867 1.03085 0.97033 1.22962 0.96253 0.97522 1.03015 1.20358 0.91637 0.96359 0.89528 1.46073 1.39729 1.20000 1.30529 1.22354 0.81453 0.82103 0.87460 1.90700 1.68768 1.36474 1.48817 1.22248 0.94088 0.92546 0.96853 0.84890 1.21818 0.98817 0.95398 1.03480 1.65181 1.23104 1.01222 1.31503 1.22811 0.95411 0.89845 1.00285 1.22653 0.96640 0.98527 0.99448 1.21754 0.97843 0.94330 0.81989 0.90071 1.45729 1.59714 1.20916 1.09402 1.19947 0.76738 0.81179 0.89796 1.90678 1.50381 1.56281 1.46359 1.23265 1.05427 1.00258 0.97289 1.84670 1.77174 1.23343 1.09274 1.22465 1.44674 1.09974 0.90697 0.92067 1.25580 0.94788 0.98919 0.96758 1.70018 1.43917 1.27531 1.13958 0.85849 0.80468 0.79234 0.80708 1.18541 1.18186 1.16182 1.23593 0.99770 0.93402 0.93302 0.88656 0.86265 0.84986 0.92586 0.91961 0.74617 0.89734 0.92935 0.89053 0.92639 0.89385 0.92334 0.91896 0.75105 0.86811 0.87221 0.91327 0.88815 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 14.32 67.77 0.97 0.03 16 2 C -0.18 -1.09 9.63 25.64 0.25 -0.84 16 3 C 0.14 1.57 6.11 85.63 0.52 2.10 16 4 N -0.71 -6.22 5.44 -466.80 -2.54 -8.76 16 5 C 0.48 6.90 6.04 87.66 0.53 7.43 16 6 O -0.57 -12.95 11.75 -3.04 -0.04 -12.99 16 7 C 0.06 0.59 2.85 44.17 0.13 0.72 16 8 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 9 C -0.14 -0.88 9.00 71.98 0.65 -0.23 16 10 N -0.49 -8.33 5.30 -862.22 -4.57 -12.90 16 11 C 0.04 0.89 6.00 86.44 0.52 1.40 16 12 C -0.13 -3.45 6.67 31.47 0.21 -3.24 16 13 C 0.15 3.82 3.34 46.20 0.15 3.97 16 14 H 0.08 2.43 7.69 -2.39 -0.02 2.41 16 15 N -0.70 -19.97 5.15 -436.83 -2.25 -22.22 16 16 C 0.54 20.19 7.84 87.66 0.69 20.88 16 17 O -0.56 -25.34 15.59 -3.03 -0.05 -25.39 16 18 C -0.11 -4.50 6.16 71.24 0.44 -4.06 16 19 S -0.17 -8.98 18.55 -56.49 -1.05 -10.03 16 20 C -0.53 -31.79 10.04 67.95 0.68 -31.11 16 21 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 22 C 0.04 2.70 5.50 84.86 0.47 3.17 16 23 N -0.92 -56.81 13.97 21.65 0.30 -56.51 16 24 Si 0.92 46.04 27.74 68.60 1.90 47.95 16 25 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 28 C 0.03 0.54 4.73 86.65 0.41 0.95 16 29 H 0.10 0.64 7.84 -2.91 -0.02 0.62 16 30 H 0.12 0.34 8.06 -2.92 -0.02 0.31 16 31 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.06 0.79 7.79 -2.39 -0.02 0.77 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.42 0.99 7.88 -92.70 -0.73 0.26 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.48 7.00 -2.39 -0.02 0.47 16 37 H 0.09 0.09 7.56 -2.38 -0.02 0.07 16 38 H 0.06 1.19 5.65 -2.38 -0.01 1.18 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.68 8.05 -2.39 -0.02 1.66 16 41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.41 9.70 8.54 -92.71 -0.79 8.91 16 43 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 44 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 45 H 0.28 15.86 8.31 -92.70 -0.77 15.09 16 46 H 0.09 1.66 7.67 -2.39 -0.02 1.64 16 47 H 0.08 1.71 5.04 -2.39 -0.01 1.70 16 Total: -1.00 -79.14 392.84 -2.25 -81.39 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.57 Total: 18.30 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 6.61 Total: 1.16 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -9.06 Total: -100.40 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.08 Total: -38.37 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.95 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -79.14 -2.25 -81.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.333 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds