Wall clock time and date at job start Wed Apr 1 2020 00:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99959 * 2 1 4 4 N 1.46497 * 109.46990 * 124.99958 * 3 2 1 5 5 C 1.34784 * 119.99863 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99921 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.99844 * 180.02562 * 5 4 3 8 8 H 1.08991 * 109.47778 * 33.16405 * 7 5 4 9 9 C 1.53004 * 109.46979 * 273.16394 * 7 5 4 10 10 N 1.46902 * 109.47266 * 153.16796 * 7 5 4 11 11 C 1.48557 * 111.00135 * 294.76096 * 10 7 5 12 12 C 1.54379 * 104.59388 * 200.95941 * 11 10 7 13 13 C 1.54253 * 105.06203 * 23.84933 * 12 11 10 14 14 H 1.08997 * 110.32528 * 118.89772 * 13 12 11 15 15 N 1.46505 * 110.32425 * 241.00287 * 13 12 11 16 16 C 1.34780 * 120.00038 * 272.17304 * 15 13 12 17 17 O 1.21279 * 119.99676 * 359.97438 * 16 15 13 18 18 C 1.50692 * 120.00075 * 179.97438 * 16 15 13 19 19 S 1.81000 * 109.47274 * 180.02562 * 18 16 15 20 20 C 1.76205 * 100.00223 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99516 * 359.97438 * 20 19 18 22 22 C 1.38786 * 120.00138 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00267 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00015 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47146 * 90.00397 * 24 22 20 26 26 H 1.48503 * 109.47371 * 210.00030 * 24 22 20 27 27 H 1.48499 * 109.47241 * 330.00011 * 24 22 20 28 28 C 1.48559 * 111.00235 * 179.33687 * 10 7 5 29 29 H 1.08000 * 120.00342 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00120 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00300 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47264 * 4.99533 * 3 2 1 33 33 H 1.09005 * 109.46720 * 245.00050 * 3 2 1 34 34 H 0.96997 * 120.00332 * 359.97438 * 4 3 2 35 35 H 1.09007 * 109.47111 * 60.00255 * 9 7 5 36 36 H 1.09005 * 109.47422 * 179.97438 * 9 7 5 37 37 H 1.08999 * 109.47403 * 300.00259 * 9 7 5 38 38 H 1.09000 * 110.41310 * 82.17296 * 11 10 7 39 39 H 1.09006 * 110.51003 * 319.78296 * 11 10 7 40 40 H 1.09001 * 110.31851 * 264.94761 * 12 11 10 41 41 H 1.09000 * 110.41091 * 142.79268 * 12 11 10 42 42 H 0.96997 * 120.00086 * 92.17326 * 15 13 12 43 43 H 1.09008 * 109.47277 * 300.00213 * 18 16 15 44 44 H 1.09001 * 109.47276 * 59.99596 * 18 16 15 45 45 H 0.97001 * 120.00785 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.40929 * 40.26125 * 28 10 7 47 47 H 1.09002 * 110.41205 * 277.82108 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4091 1.3335 6 8 3.7144 3.3560 0.5783 7 6 4.7355 2.4364 2.4969 8 1 5.1024 1.4283 2.6894 9 6 4.0134 2.9621 3.7392 10 7 5.8674 3.3172 2.1792 11 6 6.6682 2.7702 1.0538 12 6 8.0462 3.4527 1.1891 13 6 8.1503 3.8549 2.6746 14 1 8.9969 3.3540 3.1441 15 7 8.2867 5.3082 2.8000 16 6 9.5084 5.8763 2.7605 17 8 10.4946 5.1843 2.6218 18 6 9.6487 7.3711 2.8889 19 16 11.3990 7.8229 2.7980 20 6 11.2731 9.5719 2.9710 21 1 10.3041 10.0346 3.0875 22 6 12.4190 10.3548 2.9576 23 7 12.3250 11.6613 3.0873 24 14 14.0948 9.5544 2.7568 25 1 14.4342 9.4718 1.3135 26 1 15.1192 10.3674 3.4604 27 1 14.0634 8.1878 3.3370 28 6 6.8263 3.3815 3.3121 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5401 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0445 0.5748 1.7356 35 1 3.1735 2.3085 3.9751 36 1 4.7057 2.9814 4.5810 37 1 3.6464 3.9702 3.5469 38 1 6.2083 3.0276 0.0997 39 1 6.7688 1.6888 1.1469 40 1 8.0948 4.3366 0.5531 41 1 8.8428 2.7557 0.9288 42 1 7.4980 5.8616 2.9113 43 1 9.1056 7.8580 2.0788 44 1 9.2390 7.6937 3.8461 45 1 13.1257 12.2087 3.0775 46 1 6.9514 2.3960 3.7607 47 1 6.4856 4.0994 4.0582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:01 Heat of formation + Delta-G solvation = -42.136047 kcal Electronic energy + Delta-G solvation = -26684.815981 eV Core-core repulsion = 22801.520431 eV Total energy + Delta-G solvation = -3883.295549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69060 -39.58950 -38.22650 -36.23715 -34.71996 -33.36328 -32.52408 -32.39684 -29.90256 -29.03281 -27.91524 -26.92725 -25.57120 -24.04194 -21.87136 -21.17009 -21.03605 -20.21579 -20.03020 -17.96121 -17.58211 -17.18397 -16.56980 -16.35318 -15.88003 -15.71046 -15.31068 -14.96001 -14.84665 -14.73881 -14.29706 -13.94292 -13.78587 -13.62180 -13.36354 -13.23691 -13.05174 -12.76906 -12.71749 -12.47255 -12.38885 -11.97119 -11.90967 -11.75015 -11.71723 -11.37693 -11.22587 -11.02084 -10.97619 -10.55417 -10.45371 -9.94271 -9.82278 -9.50017 -9.45899 -9.01943 -8.95999 -8.77908 -8.45791 -6.87380 -6.25173 -3.96557 1.46214 2.25997 2.74700 2.81729 3.02408 3.34358 3.37851 3.53198 3.56035 3.71587 4.14106 4.22293 4.27564 4.36498 4.47366 4.51558 4.56985 4.75967 4.79320 4.91801 4.97801 5.00357 5.07216 5.13879 5.15343 5.19789 5.23606 5.31878 5.33664 5.39406 5.54053 5.68711 5.69552 5.81684 5.83897 5.86030 5.90879 6.04376 6.08675 6.09260 6.39523 6.47372 6.68636 7.05503 7.71404 7.85659 7.97932 8.45946 8.56038 9.21066 10.84111 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.001746 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.539080 B =16029.463105 C =16203.927566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.517 3.483 6 O -0.512 6.512 7 C 0.057 3.943 8 H 0.062 0.938 9 C -0.142 4.142 10 N -0.485 5.485 11 C 0.032 3.968 12 C -0.134 4.134 13 C 0.147 3.853 14 H 0.097 0.903 15 N -0.725 5.725 16 C 0.532 3.468 17 O -0.522 6.522 18 C -0.124 4.124 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 C 0.026 3.974 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.403 0.597 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.059 0.941 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.911 -27.383 -1.050 36.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.302 3.698 6 O -0.385 6.385 7 C -0.055 4.055 8 H 0.080 0.920 9 C -0.200 4.200 10 N -0.211 5.211 11 C -0.096 4.096 12 C -0.173 4.173 13 C 0.041 3.959 14 H 0.115 0.885 15 N -0.379 5.379 16 C 0.318 3.682 17 O -0.397 6.397 18 C -0.274 4.274 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 C -0.102 4.102 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.238 0.762 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.454 -27.112 -1.960 35.258 hybrid contribution -0.553 -0.266 0.501 0.792 sum -23.007 -27.378 -1.459 35.791 Atomic orbital electron populations 1.24010 0.95792 1.02538 0.97857 1.22998 0.96255 0.98059 1.02338 1.20397 0.91820 0.95577 0.89820 1.46034 1.41585 1.20084 1.30962 1.20485 0.81056 0.82236 0.86069 1.90747 1.66909 1.34726 1.46115 1.21767 0.92871 0.96468 0.94414 0.92044 1.21793 1.00288 1.02827 0.95081 1.65333 1.05904 1.44970 1.04850 1.23193 0.93703 0.96657 0.96007 1.22781 0.95770 1.01706 0.97081 1.21531 0.97038 0.82011 0.95364 0.88510 1.46017 1.08825 1.06967 1.76076 1.20285 0.82698 0.89986 0.75219 1.90686 1.37332 1.64085 1.47604 1.23279 1.04586 0.93799 1.05782 1.84749 1.01943 1.08662 1.96302 1.22331 0.98000 0.88794 1.57702 0.89384 1.24706 0.99077 0.94234 0.93273 1.69941 1.30019 1.03887 1.47915 0.86733 0.83591 0.81721 0.79780 1.19240 1.19985 1.15946 1.23468 0.91471 1.01187 0.94104 0.87810 0.88085 0.86691 0.91002 0.90613 0.76633 0.91706 0.91008 0.90682 0.89422 0.93969 0.89951 0.90485 0.76175 0.88456 0.88472 0.91984 0.92288 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 14.32 29.02 0.42 -0.14 16 2 C -0.18 -0.68 9.63 -36.02 -0.35 -1.03 16 3 C 0.15 0.87 6.11 -5.19 -0.03 0.84 16 4 N -0.73 -4.30 5.55 -61.47 -0.34 -4.64 16 5 C 0.52 4.63 6.36 -10.99 -0.07 4.56 16 6 O -0.51 -6.93 16.00 5.56 0.09 -6.84 16 7 C 0.06 0.41 2.24 -68.87 -0.15 0.26 16 8 H 0.06 0.32 7.97 -51.93 -0.41 -0.10 16 9 C -0.14 -0.83 9.01 37.16 0.33 -0.50 16 10 N -0.49 -4.52 4.87 -223.41 -1.09 -5.61 16 11 C 0.03 0.31 5.76 -2.18 -0.01 0.30 16 12 C -0.13 -1.50 6.79 -25.35 -0.17 -1.67 16 13 C 0.15 1.65 3.38 -66.55 -0.22 1.42 16 14 H 0.10 1.19 7.60 -51.93 -0.39 0.80 16 15 N -0.72 -9.51 4.99 -52.47 -0.26 -9.77 16 16 C 0.53 9.51 7.85 -10.99 -0.09 9.42 16 17 O -0.52 -11.18 15.54 5.56 0.09 -11.10 16 18 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 19 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 21 H 0.09 2.69 8.03 -52.48 -0.42 2.26 16 22 C 0.10 2.83 5.50 -17.44 -0.10 2.73 16 23 N -0.88 -26.88 13.97 55.49 0.78 -26.11 16 24 Si 0.86 22.03 27.74 -169.99 -4.71 17.31 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 C 0.03 0.21 4.93 -2.18 -0.01 0.20 16 29 H 0.10 0.23 8.06 -52.49 -0.42 -0.19 16 30 H 0.10 0.34 7.84 -52.48 -0.41 -0.07 16 31 H 0.12 0.32 8.06 -52.49 -0.42 -0.11 16 32 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.25 8.46 -40.82 -0.35 0.91 16 35 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.07 0.36 6.93 -51.93 -0.36 0.00 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.00 7.59 -51.93 -0.39 0.60 16 39 H 0.04 0.34 7.90 -51.93 -0.41 -0.07 16 40 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.40 4.54 8.59 -40.82 -0.35 4.19 16 43 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 44 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.06 0.39 7.98 -51.93 -0.41 -0.02 16 47 H 0.09 0.74 7.53 -51.93 -0.39 0.35 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -36.65 401.67 -8.98 -45.63 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.66 Total: 1.46 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.08 Total: -0.72 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.92 Total: -46.13 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.65 -8.98 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.492 kcal (2) G-P(sol) polarization free energy of solvation -36.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds