Wall clock time and date at job start Wed Apr 1 2020 00:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99959 * 2 1 4 4 N 1.46497 * 109.46990 * 124.99958 * 3 2 1 5 5 C 1.34784 * 119.99863 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99921 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.99844 * 180.02562 * 5 4 3 8 8 H 1.08991 * 109.47778 * 33.16405 * 7 5 4 9 9 C 1.53004 * 109.46979 * 273.16394 * 7 5 4 10 10 N 1.46902 * 109.47266 * 153.16796 * 7 5 4 11 11 C 1.48557 * 111.00135 * 294.76096 * 10 7 5 12 12 C 1.54379 * 104.59388 * 200.95941 * 11 10 7 13 13 C 1.54253 * 105.06203 * 23.84933 * 12 11 10 14 14 H 1.08997 * 110.32528 * 118.89772 * 13 12 11 15 15 N 1.46505 * 110.32425 * 241.00287 * 13 12 11 16 16 C 1.34780 * 120.00038 * 272.17304 * 15 13 12 17 17 O 1.21279 * 119.99676 * 359.97438 * 16 15 13 18 18 C 1.50692 * 120.00075 * 179.97438 * 16 15 13 19 19 S 1.81000 * 109.47274 * 180.02562 * 18 16 15 20 20 C 1.76205 * 100.00223 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99516 * 359.97438 * 20 19 18 22 22 C 1.38786 * 120.00138 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00267 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00015 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47146 * 90.00397 * 24 22 20 26 26 H 1.48503 * 109.47371 * 210.00030 * 24 22 20 27 27 H 1.48499 * 109.47241 * 330.00011 * 24 22 20 28 28 C 1.48559 * 111.00235 * 179.33687 * 10 7 5 29 29 H 1.08000 * 120.00342 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00120 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00300 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47264 * 4.99533 * 3 2 1 33 33 H 1.09005 * 109.46720 * 245.00050 * 3 2 1 34 34 H 0.96997 * 120.00332 * 359.97438 * 4 3 2 35 35 H 1.09007 * 109.47111 * 60.00255 * 9 7 5 36 36 H 1.09005 * 109.47422 * 179.97438 * 9 7 5 37 37 H 1.08999 * 109.47403 * 300.00259 * 9 7 5 38 38 H 1.09000 * 110.41310 * 82.17296 * 11 10 7 39 39 H 1.09006 * 110.51003 * 319.78296 * 11 10 7 40 40 H 1.09001 * 110.31851 * 264.94761 * 12 11 10 41 41 H 1.09000 * 110.41091 * 142.79268 * 12 11 10 42 42 H 0.96997 * 120.00086 * 92.17326 * 15 13 12 43 43 H 1.09008 * 109.47277 * 300.00213 * 18 16 15 44 44 H 1.09001 * 109.47276 * 59.99596 * 18 16 15 45 45 H 0.97001 * 120.00785 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.40929 * 40.26125 * 28 10 7 47 47 H 1.09002 * 110.41205 * 277.82108 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4091 1.3335 6 8 3.7144 3.3560 0.5783 7 6 4.7355 2.4364 2.4969 8 1 5.1024 1.4283 2.6894 9 6 4.0134 2.9621 3.7392 10 7 5.8674 3.3172 2.1792 11 6 6.6682 2.7702 1.0538 12 6 8.0462 3.4527 1.1891 13 6 8.1503 3.8549 2.6746 14 1 8.9969 3.3540 3.1441 15 7 8.2867 5.3082 2.8000 16 6 9.5084 5.8763 2.7605 17 8 10.4946 5.1843 2.6218 18 6 9.6487 7.3711 2.8889 19 16 11.3990 7.8229 2.7980 20 6 11.2731 9.5719 2.9710 21 1 10.3041 10.0346 3.0875 22 6 12.4190 10.3548 2.9576 23 7 12.3250 11.6613 3.0873 24 14 14.0948 9.5544 2.7568 25 1 14.4342 9.4718 1.3135 26 1 15.1192 10.3674 3.4604 27 1 14.0634 8.1878 3.3370 28 6 6.8263 3.3815 3.3121 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5401 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0445 0.5748 1.7356 35 1 3.1735 2.3085 3.9751 36 1 4.7057 2.9814 4.5810 37 1 3.6464 3.9702 3.5469 38 1 6.2083 3.0276 0.0997 39 1 6.7688 1.6888 1.1469 40 1 8.0948 4.3366 0.5531 41 1 8.8428 2.7557 0.9288 42 1 7.4980 5.8616 2.9113 43 1 9.1056 7.8580 2.0788 44 1 9.2390 7.6937 3.8461 45 1 13.1257 12.2087 3.0775 46 1 6.9514 2.3960 3.7607 47 1 6.4856 4.0994 4.0582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:00 Heat of formation + Delta-G solvation = -71.233430 kcal Electronic energy + Delta-G solvation = -26686.077738 eV Core-core repulsion = 22801.520431 eV Total energy + Delta-G solvation = -3884.557306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45470 -40.68401 -39.21447 -36.77898 -35.70537 -34.66935 -34.03475 -33.26666 -31.19374 -29.74316 -28.94115 -27.83635 -27.42271 -24.66285 -22.63637 -22.26019 -21.54554 -21.28117 -20.53667 -19.89397 -18.36705 -17.92112 -17.80057 -17.38426 -17.06593 -16.59504 -16.41971 -16.30134 -16.08001 -15.70015 -15.35075 -15.00271 -14.79729 -14.69054 -14.40817 -14.16320 -14.15920 -13.69415 -13.51659 -13.34682 -13.29790 -13.10216 -13.04331 -12.97372 -12.65235 -12.57568 -12.46556 -12.11609 -12.06277 -11.89703 -11.85087 -11.16715 -10.99402 -10.93799 -10.53636 -10.47735 -10.15135 -10.05186 -9.46531 -8.98643 -8.50941 -6.21839 0.99676 1.15721 1.32104 1.47273 1.56580 1.58042 1.60275 2.22081 2.24650 2.28932 2.72545 2.87220 2.93659 3.45576 3.61352 3.80953 3.89034 3.91366 4.04873 4.11452 4.13772 4.18430 4.23990 4.26004 4.39379 4.48484 4.54373 4.59176 4.71741 4.72570 4.78029 4.81874 4.88556 4.98273 4.99480 5.10526 5.26289 5.35593 5.48172 5.63307 5.71072 5.76483 5.76815 5.85817 6.11765 6.49994 6.57055 6.93991 7.21613 7.26832 8.61615 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.001746 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.539080 B =16029.463105 C =16203.927566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.716 5.716 5 C 0.513 3.487 6 O -0.567 6.567 7 C 0.059 3.941 8 H 0.094 0.906 9 C -0.138 4.138 10 N -0.506 5.506 11 C 0.042 3.958 12 C -0.133 4.133 13 C 0.142 3.858 14 H 0.090 0.910 15 N -0.702 5.702 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.113 4.113 19 S -0.171 6.171 20 C -0.531 4.531 21 H 0.060 0.940 22 C 0.046 3.954 23 N -0.918 5.918 24 Si 0.916 3.084 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 C 0.037 3.963 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.416 0.584 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.415 0.585 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.277 0.723 46 H 0.088 0.912 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.875 -30.467 0.088 39.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.370 5.370 5 C 0.299 3.701 6 O -0.445 6.445 7 C -0.053 4.053 8 H 0.112 0.888 9 C -0.196 4.196 10 N -0.232 5.232 11 C -0.085 4.085 12 C -0.172 4.172 13 C 0.036 3.964 14 H 0.109 0.891 15 N -0.356 5.356 16 C 0.324 3.676 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.055 5.945 20 C -0.679 4.679 21 H 0.078 0.922 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.738 3.262 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.159 1.159 28 C -0.090 4.090 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.252 0.748 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.486 -30.243 -0.795 38.300 hybrid contribution -0.480 0.643 0.119 0.811 sum -23.966 -29.600 -0.676 38.092 Atomic orbital electron populations 1.24175 0.95751 1.03185 0.96777 1.22933 0.96295 0.97346 1.03229 1.20366 0.91553 0.96552 0.89259 1.45933 1.40438 1.19796 1.30836 1.20927 0.81244 0.81943 0.85969 1.90727 1.68700 1.36859 1.48188 1.21864 0.91795 0.97773 0.93896 0.88847 1.21799 1.01188 1.01881 0.94741 1.65267 1.06562 1.46366 1.05018 1.23026 0.92388 0.97684 0.95443 1.22712 0.97036 1.00914 0.96535 1.21739 0.98753 0.80153 0.95727 0.89147 1.45852 1.07541 1.08292 1.73883 1.19888 0.83640 0.88818 0.75295 1.90675 1.38825 1.64445 1.49938 1.23280 1.00190 0.95727 1.07185 1.84624 1.07567 1.05857 1.96443 1.22482 0.97022 0.90980 1.57400 0.92177 1.25575 1.02700 0.94756 0.92932 1.70020 1.31440 1.05208 1.48886 0.85847 0.79474 0.80906 0.80006 1.18792 1.18213 1.15941 1.23435 0.89200 1.02800 0.93605 0.86199 0.88459 0.85106 0.92391 0.92089 0.74681 0.89722 0.89511 0.92996 0.91716 0.91730 0.92499 0.90188 0.74828 0.87466 0.86798 0.91368 0.89408 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 14.32 67.79 0.97 0.16 16 2 C -0.18 -1.06 9.63 25.65 0.25 -0.82 16 3 C 0.15 1.66 6.11 85.64 0.52 2.18 16 4 N -0.72 -7.24 5.55 -466.79 -2.59 -9.83 16 5 C 0.51 8.61 6.36 87.65 0.56 9.17 16 6 O -0.57 -15.65 16.00 -3.03 -0.05 -15.70 16 7 C 0.06 0.68 2.24 44.17 0.10 0.78 16 8 H 0.09 0.53 7.97 -2.39 -0.02 0.51 16 9 C -0.14 -1.21 9.01 71.98 0.65 -0.56 16 10 N -0.51 -8.36 4.87 -860.75 -4.19 -12.56 16 11 C 0.04 0.76 5.76 86.45 0.50 1.26 16 12 C -0.13 -2.85 6.79 31.49 0.21 -2.64 16 13 C 0.14 2.92 3.38 45.88 0.16 3.07 16 14 H 0.09 2.06 7.60 -2.39 -0.02 2.04 16 15 N -0.70 -17.44 4.99 -438.31 -2.19 -19.63 16 16 C 0.54 18.78 7.85 87.65 0.69 19.47 16 17 O -0.56 -23.76 15.54 -3.03 -0.05 -23.81 16 18 C -0.11 -4.40 6.16 71.23 0.44 -3.96 16 19 S -0.17 -8.81 18.55 -56.49 -1.05 -9.86 16 20 C -0.53 -31.56 10.04 67.95 0.68 -30.88 16 21 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 22 C 0.05 2.72 5.50 84.85 0.47 3.19 16 23 N -0.92 -56.69 13.97 21.65 0.30 -56.38 16 24 Si 0.92 45.56 27.74 68.60 1.90 47.47 16 25 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 28 C 0.04 0.50 4.93 86.45 0.43 0.92 16 29 H 0.12 0.24 8.06 -2.91 -0.02 0.22 16 30 H 0.10 0.56 7.84 -2.91 -0.02 0.53 16 31 H 0.13 0.38 8.06 -2.91 -0.02 0.35 16 32 H 0.06 0.82 7.79 -2.39 -0.02 0.80 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.42 1.39 8.46 -92.71 -0.78 0.61 16 35 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.09 0.52 6.93 -2.38 -0.02 0.50 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 1.48 7.59 -2.39 -0.02 1.47 16 39 H 0.06 0.86 7.90 -2.38 -0.02 0.85 16 40 H 0.06 1.51 7.95 -2.39 -0.02 1.49 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.41 8.60 8.59 -92.71 -0.80 7.80 16 43 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 45 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 46 H 0.09 0.74 7.98 -2.39 -0.02 0.72 16 47 H 0.10 1.25 7.53 -2.39 -0.02 1.23 16 Total: -1.00 -81.91 401.67 -1.94 -83.85 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -0.64 Total: 15.10 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.61 Total: 1.34 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -8.67 Total: -98.40 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.10 Total: -39.51 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -81.91 -1.94 -83.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.615 kcal (2) G-P(sol) polarization free energy of solvation -81.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds