Wall clock time and date at job start Wed Apr 1 2020 00:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00489 * 2 1 4 4 N 1.46499 * 109.47447 * 125.00154 * 3 2 1 5 5 C 1.34771 * 119.99811 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00250 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99808 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.47083 * 33.23379 * 7 5 4 9 9 C 1.53004 * 109.47374 * 273.23026 * 7 5 4 10 10 N 1.46899 * 109.47127 * 153.23147 * 7 5 4 11 11 C 1.47905 * 110.99865 * 295.68555 * 10 7 5 12 12 C 1.53994 * 107.05797 * 214.15722 * 11 10 7 13 13 C 1.54589 * 105.13954 * 1.22414 * 12 11 10 14 14 H 1.08999 * 110.72712 * 263.60044 * 13 12 11 15 15 N 1.46505 * 110.72371 * 140.31771 * 13 12 11 16 16 C 1.34780 * 119.99863 * 86.45107 * 15 13 12 17 17 O 1.21272 * 120.00091 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99674 * 180.02562 * 16 15 13 19 19 S 1.80995 * 109.46879 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99774 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00086 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99819 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47345 * 59.99666 * 24 22 20 26 26 H 1.48498 * 109.46953 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47046 * 299.99589 * 24 22 20 28 28 C 1.48529 * 111.00162 * 178.29132 * 10 7 5 29 29 H 1.08004 * 119.99414 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00057 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99508 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46675 * 4.99722 * 3 2 1 33 33 H 1.09004 * 109.46798 * 245.00032 * 3 2 1 34 34 H 0.96999 * 119.99760 * 359.97438 * 4 3 2 35 35 H 1.09007 * 109.46617 * 59.99936 * 9 7 5 36 36 H 1.08998 * 109.47041 * 179.97438 * 9 7 5 37 37 H 1.08997 * 109.46741 * 300.00193 * 9 7 5 38 38 H 1.08994 * 109.92015 * 333.50971 * 11 10 7 39 39 H 1.09006 * 109.91676 * 94.60348 * 11 10 7 40 40 H 1.08999 * 110.30805 * 120.14874 * 12 11 10 41 41 H 1.09009 * 110.30774 * 242.30848 * 12 11 10 42 42 H 0.97005 * 119.99724 * 266.45679 * 15 13 12 43 43 H 1.09007 * 109.46862 * 299.99924 * 18 16 15 44 44 H 1.09001 * 109.46908 * 59.99701 * 18 16 15 45 45 H 0.97006 * 119.99712 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.66798 * 278.15472 * 28 10 7 47 47 H 1.09004 * 110.66517 * 41.28584 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7784 2.4089 1.3333 6 8 3.7139 3.3562 0.5787 7 6 4.7350 2.4367 2.4975 8 1 5.1026 1.4286 2.6899 9 6 4.0119 2.9616 3.7395 10 7 5.8665 3.3182 2.1806 11 6 6.6520 2.7855 1.0462 12 6 8.1250 3.1527 1.3046 13 6 8.1244 3.8928 2.6619 14 1 8.1015 4.9723 2.5126 15 7 9.2862 3.5036 3.4650 16 6 10.4598 4.1478 3.3089 17 8 10.5538 5.0499 2.5038 18 6 11.6550 3.7471 4.1347 19 16 13.0676 4.7909 3.6976 20 6 14.2870 4.1247 4.7809 21 1 14.0338 3.3101 5.4434 22 6 15.5735 4.6460 4.7822 23 7 15.8822 5.6385 3.9745 24 14 16.8665 3.9392 5.9302 25 1 17.0634 2.4989 5.6272 26 1 18.1477 4.6654 5.7396 27 1 16.4161 4.0920 7.3370 28 6 6.8117 3.4028 3.3232 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.0447 0.5746 1.7355 35 1 3.1722 2.3074 3.9746 36 1 4.7036 2.9812 4.5816 37 1 3.6444 3.9695 3.5470 38 1 6.5428 1.7022 0.9951 39 1 6.3116 3.2371 0.1143 40 1 8.7345 2.2511 1.3654 41 1 8.4954 3.8082 0.5164 42 1 9.2109 2.7822 4.1092 43 1 11.4243 3.8728 5.1926 44 1 11.8993 2.7032 3.9376 45 1 16.7813 6.0025 3.9752 46 1 6.4600 4.1241 4.0608 47 1 6.9531 2.4227 3.7788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:03 Heat of formation + Delta-G solvation = -42.399470 kcal Electronic energy + Delta-G solvation = -26470.165945 eV Core-core repulsion = 22586.858972 eV Total energy + Delta-G solvation = -3883.306972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66875 -39.52775 -38.21457 -36.22399 -34.71866 -33.37621 -32.53414 -32.42308 -29.84578 -29.00003 -27.84832 -26.90084 -25.47488 -23.95554 -21.81178 -21.18281 -21.03489 -20.39385 -19.81205 -17.91139 -17.62193 -17.17224 -16.54407 -16.31437 -15.86185 -15.76855 -15.20479 -14.81087 -14.78792 -14.56057 -14.37543 -13.97829 -13.82627 -13.65668 -13.51604 -13.11370 -12.92547 -12.80924 -12.66699 -12.46499 -12.37774 -12.12965 -11.76091 -11.68702 -11.58356 -11.46689 -11.04355 -11.03829 -10.79580 -10.76634 -10.44301 -9.93022 -9.82198 -9.48928 -9.41074 -9.06187 -8.91184 -8.76709 -8.23453 -6.49599 -6.21122 -3.91840 1.47054 2.26583 2.72215 3.01974 3.08575 3.23455 3.26919 3.29753 3.53712 3.82397 4.15660 4.20703 4.25587 4.32665 4.48399 4.57213 4.58762 4.74189 4.91143 4.96147 4.99461 5.09978 5.13899 5.15289 5.18896 5.22001 5.24752 5.33179 5.39283 5.59629 5.63256 5.71940 5.81623 5.86006 5.87810 5.91801 5.98733 6.09080 6.09868 6.13136 6.41563 6.50763 6.69766 7.06844 7.59284 7.69346 7.86733 8.35121 8.61516 9.23927 10.86213 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.001597 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.314932 B =17533.727462 C =17649.064478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.517 3.483 6 O -0.512 6.512 7 C 0.060 3.940 8 H 0.062 0.938 9 C -0.142 4.142 10 N -0.490 5.490 11 C 0.039 3.961 12 C -0.142 4.142 13 C 0.147 3.853 14 H 0.104 0.896 15 N -0.733 5.733 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.032 3.968 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.094 0.906 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.695 -14.709 -2.262 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.302 3.698 6 O -0.385 6.385 7 C -0.052 4.052 8 H 0.079 0.921 9 C -0.200 4.200 10 N -0.215 5.215 11 C -0.089 4.089 12 C -0.182 4.182 13 C 0.041 3.959 14 H 0.122 0.878 15 N -0.387 5.387 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.096 4.096 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.661 -11.825 -4.381 33.153 hybrid contribution 0.962 -3.258 2.374 4.144 sum -29.699 -15.083 -2.007 33.370 Atomic orbital electron populations 1.24005 0.95786 1.02519 0.97921 1.23004 0.96258 0.98081 1.02277 1.20397 0.91807 0.95564 0.89838 1.46029 1.41564 1.20093 1.30969 1.20486 0.81043 0.82242 0.86072 1.90739 1.66900 1.34732 1.46160 1.21784 0.92720 0.96311 0.94392 0.92055 1.21800 1.00285 1.02803 0.95117 1.64600 1.06469 1.45785 1.04676 1.22907 0.92778 0.97550 0.95681 1.22849 0.95224 1.01286 0.98797 1.21688 0.83541 1.00978 0.89698 0.87778 1.45992 1.10317 1.39172 1.43242 1.20316 0.83284 0.81510 0.82951 1.90712 1.83458 1.29069 1.35369 1.23536 0.98904 1.05810 1.02162 1.85421 0.99494 1.44506 1.53797 1.22830 0.97346 1.22586 1.25779 0.91003 1.24985 0.97734 0.94804 0.95989 1.70009 1.20698 1.23584 1.35951 0.86230 0.79785 0.79034 0.80482 1.19968 1.20797 1.19947 1.23468 0.91592 1.00720 0.93827 0.88103 0.87811 0.86672 0.91014 0.90597 0.76610 0.91685 0.90968 0.90689 0.94083 0.89446 0.90863 0.89924 0.76919 0.89210 0.89292 0.92115 0.88790 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 14.32 29.02 0.42 -0.15 16 2 C -0.18 -0.70 9.63 -36.03 -0.35 -1.05 16 3 C 0.15 0.88 6.11 -5.19 -0.03 0.85 16 4 N -0.73 -4.45 5.55 -61.47 -0.34 -4.79 16 5 C 0.52 4.77 6.36 -10.99 -0.07 4.70 16 6 O -0.51 -7.01 16.18 5.56 0.09 -6.92 16 7 C 0.06 0.46 2.16 -68.86 -0.15 0.31 16 8 H 0.06 0.35 7.97 -51.93 -0.41 -0.06 16 9 C -0.14 -0.87 8.99 37.16 0.33 -0.54 16 10 N -0.49 -4.91 4.79 -223.88 -1.07 -5.98 16 11 C 0.04 0.40 5.80 -2.75 -0.02 0.39 16 12 C -0.14 -1.67 6.67 -25.38 -0.17 -1.84 16 13 C 0.15 1.78 3.34 -66.07 -0.22 1.56 16 14 H 0.10 1.53 7.70 -51.93 -0.40 1.13 16 15 N -0.73 -9.45 5.14 -52.01 -0.27 -9.72 16 16 C 0.53 9.79 7.84 -10.98 -0.09 9.70 16 17 O -0.51 -11.60 15.59 5.56 0.09 -11.52 16 18 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 24 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.03 0.29 4.94 -1.90 -0.01 0.28 16 29 H 0.10 0.33 7.84 -52.48 -0.41 -0.08 16 30 H 0.10 0.24 8.06 -52.49 -0.42 -0.18 16 31 H 0.12 0.34 8.06 -52.48 -0.42 -0.08 16 32 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.35 8.46 -40.82 -0.35 1.01 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.38 6.90 -51.93 -0.36 0.02 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.37 7.66 -51.93 -0.40 -0.03 16 39 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 40 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.40 3.84 8.53 -40.82 -0.35 3.49 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.09 0.79 7.66 -51.93 -0.40 0.40 16 47 H 0.05 0.37 7.89 -51.93 -0.41 -0.04 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -36.82 404.69 -9.48 -46.30 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.64 Total: 1.01 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.07 Total: -1.55 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.95 Total: -45.92 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.82 -9.48 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.900 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds