Wall clock time and date at job start Wed Apr 1 2020 00:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00489 * 2 1 4 4 N 1.46499 * 109.47447 * 125.00154 * 3 2 1 5 5 C 1.34771 * 119.99811 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00250 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99808 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.47083 * 33.23379 * 7 5 4 9 9 C 1.53004 * 109.47374 * 273.23026 * 7 5 4 10 10 N 1.46899 * 109.47127 * 153.23147 * 7 5 4 11 11 C 1.47905 * 110.99865 * 295.68555 * 10 7 5 12 12 C 1.53994 * 107.05797 * 214.15722 * 11 10 7 13 13 C 1.54589 * 105.13954 * 1.22414 * 12 11 10 14 14 H 1.08999 * 110.72712 * 263.60044 * 13 12 11 15 15 N 1.46505 * 110.72371 * 140.31771 * 13 12 11 16 16 C 1.34780 * 119.99863 * 86.45107 * 15 13 12 17 17 O 1.21272 * 120.00091 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99674 * 180.02562 * 16 15 13 19 19 S 1.80995 * 109.46879 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99774 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00086 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99819 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47345 * 59.99666 * 24 22 20 26 26 H 1.48498 * 109.46953 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47046 * 299.99589 * 24 22 20 28 28 C 1.48529 * 111.00162 * 178.29132 * 10 7 5 29 29 H 1.08004 * 119.99414 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00057 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99508 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46675 * 4.99722 * 3 2 1 33 33 H 1.09004 * 109.46798 * 245.00032 * 3 2 1 34 34 H 0.96999 * 119.99760 * 359.97438 * 4 3 2 35 35 H 1.09007 * 109.46617 * 59.99936 * 9 7 5 36 36 H 1.08998 * 109.47041 * 179.97438 * 9 7 5 37 37 H 1.08997 * 109.46741 * 300.00193 * 9 7 5 38 38 H 1.08994 * 109.92015 * 333.50971 * 11 10 7 39 39 H 1.09006 * 109.91676 * 94.60348 * 11 10 7 40 40 H 1.08999 * 110.30805 * 120.14874 * 12 11 10 41 41 H 1.09009 * 110.30774 * 242.30848 * 12 11 10 42 42 H 0.97005 * 119.99724 * 266.45679 * 15 13 12 43 43 H 1.09007 * 109.46862 * 299.99924 * 18 16 15 44 44 H 1.09001 * 109.46908 * 59.99701 * 18 16 15 45 45 H 0.97006 * 119.99712 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.66798 * 278.15472 * 28 10 7 47 47 H 1.09004 * 110.66517 * 41.28584 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7784 2.4089 1.3333 6 8 3.7139 3.3562 0.5787 7 6 4.7350 2.4367 2.4975 8 1 5.1026 1.4286 2.6899 9 6 4.0119 2.9616 3.7395 10 7 5.8665 3.3182 2.1806 11 6 6.6520 2.7855 1.0462 12 6 8.1250 3.1527 1.3046 13 6 8.1244 3.8928 2.6619 14 1 8.1015 4.9723 2.5126 15 7 9.2862 3.5036 3.4650 16 6 10.4598 4.1478 3.3089 17 8 10.5538 5.0499 2.5038 18 6 11.6550 3.7471 4.1347 19 16 13.0676 4.7909 3.6976 20 6 14.2870 4.1247 4.7809 21 1 14.0338 3.3101 5.4434 22 6 15.5735 4.6460 4.7822 23 7 15.8822 5.6385 3.9745 24 14 16.8665 3.9392 5.9302 25 1 17.0634 2.4989 5.6272 26 1 18.1477 4.6654 5.7396 27 1 16.4161 4.0920 7.3370 28 6 6.8117 3.4028 3.3232 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.0447 0.5746 1.7355 35 1 3.1722 2.3074 3.9746 36 1 4.7036 2.9812 4.5816 37 1 3.6444 3.9695 3.5470 38 1 6.5428 1.7022 0.9951 39 1 6.3116 3.2371 0.1143 40 1 8.7345 2.2511 1.3654 41 1 8.4954 3.8082 0.5164 42 1 9.2109 2.7822 4.1092 43 1 11.4243 3.8728 5.1926 44 1 11.8993 2.7032 3.9376 45 1 16.7813 6.0025 3.9752 46 1 6.4600 4.1241 4.0608 47 1 6.9531 2.4227 3.7788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:02 Heat of formation + Delta-G solvation = -71.797076 kcal Electronic energy + Delta-G solvation = -26471.440720 eV Core-core repulsion = 22586.858972 eV Total energy + Delta-G solvation = -3884.581748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46061 -40.67669 -39.24616 -36.78227 -35.77596 -34.57056 -34.07491 -33.27960 -31.17264 -29.76908 -28.90716 -27.63713 -27.40454 -24.62441 -22.68788 -22.20502 -21.62976 -21.38492 -20.46489 -19.82796 -18.35060 -17.95388 -17.87704 -17.14349 -16.86394 -16.81061 -16.40795 -16.22443 -16.15546 -15.70923 -15.15518 -15.10219 -14.69128 -14.55968 -14.34372 -14.27525 -14.09634 -13.72857 -13.51042 -13.41186 -13.21383 -13.15583 -12.96463 -12.84826 -12.64533 -12.59654 -12.35620 -12.33241 -12.05964 -11.75316 -11.71211 -11.11435 -10.97141 -10.96182 -10.48026 -10.25556 -10.14175 -10.06061 -9.45319 -8.65415 -8.32984 -6.11300 1.15624 1.27532 1.45116 1.47485 1.55856 1.59743 1.61932 2.10029 2.28832 2.35413 2.95132 3.01216 3.33349 3.44112 3.63398 3.81511 3.89846 3.93281 4.00283 4.09042 4.11710 4.16407 4.22057 4.29750 4.33725 4.52547 4.53401 4.54801 4.72637 4.75552 4.80342 4.84992 4.91544 4.99431 4.99978 5.08669 5.24480 5.35117 5.42247 5.43066 5.63799 5.76668 5.77326 5.85026 6.20947 6.52142 6.56649 7.08152 7.25865 7.27052 8.75960 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.001597 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.314932 B =17533.727462 C =17649.064478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.716 5.716 5 C 0.513 3.487 6 O -0.567 6.567 7 C 0.061 3.939 8 H 0.095 0.905 9 C -0.139 4.139 10 N -0.514 5.514 11 C 0.050 3.950 12 C -0.139 4.139 13 C 0.143 3.857 14 H 0.071 0.929 15 N -0.702 5.702 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.128 4.128 19 S -0.155 6.155 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.261 1.261 28 C 0.047 3.953 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.417 0.583 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.419 0.581 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.102 0.898 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.023 -18.444 0.375 36.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.369 5.369 5 C 0.299 3.701 6 O -0.445 6.445 7 C -0.050 4.050 8 H 0.113 0.887 9 C -0.197 4.197 10 N -0.240 5.240 11 C -0.078 4.078 12 C -0.178 4.178 13 C 0.037 3.963 14 H 0.090 0.910 15 N -0.356 5.356 16 C 0.321 3.679 17 O -0.442 6.442 18 C -0.279 4.279 19 S 0.072 5.928 20 C -0.694 4.694 21 H 0.103 0.897 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.081 4.081 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.257 0.743 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -32.055 -15.650 -1.697 35.712 hybrid contribution 1.183 -2.132 1.503 2.864 sum -30.872 -17.782 -0.195 35.627 Atomic orbital electron populations 1.24175 0.95719 1.03200 0.96734 1.22932 0.96314 0.97330 1.03267 1.20373 0.91543 0.96587 0.89228 1.45922 1.40400 1.19750 1.30861 1.20914 0.81264 0.81995 0.85963 1.90722 1.68675 1.36873 1.48215 1.21899 0.91550 0.97565 0.94022 0.88729 1.21815 1.01255 1.01888 0.94699 1.64516 1.07225 1.47395 1.04854 1.22709 0.91492 0.98487 0.95135 1.22763 0.96448 1.00898 0.97679 1.21709 0.84670 0.99453 0.90474 0.91035 1.45632 1.08718 1.38436 1.42861 1.20109 0.84309 0.81254 0.82197 1.90708 1.84352 1.31576 1.37599 1.23365 0.96073 1.04943 1.03510 1.85651 1.03921 1.48009 1.55229 1.23184 0.97732 1.22788 1.25735 0.89741 1.26133 1.00331 0.94988 0.97680 1.70187 1.21323 1.25332 1.38024 0.85004 0.76240 0.78528 0.78223 1.18599 1.20550 1.18583 1.23400 0.88936 1.02513 0.93262 0.88390 0.86216 0.85167 0.92282 0.92096 0.74644 0.89469 0.89406 0.93061 0.91932 0.91983 0.89951 0.92724 0.74316 0.86922 0.87012 0.92046 0.87986 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 14.32 67.78 0.97 0.16 16 2 C -0.18 -1.10 9.63 25.65 0.25 -0.85 16 3 C 0.15 1.68 6.11 85.63 0.52 2.21 16 4 N -0.72 -7.48 5.55 -466.79 -2.59 -10.07 16 5 C 0.51 8.93 6.36 87.66 0.56 9.49 16 6 O -0.57 -16.02 16.18 -3.03 -0.05 -16.07 16 7 C 0.06 0.77 2.16 44.17 0.10 0.86 16 8 H 0.10 0.60 7.97 -2.38 -0.02 0.58 16 9 C -0.14 -1.29 8.99 71.98 0.65 -0.64 16 10 N -0.51 -9.48 4.79 -862.21 -4.13 -13.61 16 11 C 0.05 1.00 5.80 86.45 0.50 1.50 16 12 C -0.14 -3.22 6.67 31.47 0.21 -3.01 16 13 C 0.14 3.33 3.34 46.19 0.15 3.48 16 14 H 0.07 2.19 7.70 -2.39 -0.02 2.17 16 15 N -0.70 -16.64 5.14 -436.84 -2.25 -18.89 16 16 C 0.54 19.37 7.84 87.66 0.69 20.05 16 17 O -0.56 -26.47 15.59 -3.01 -0.05 -26.51 16 18 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 19 S -0.16 -8.60 20.57 -56.49 -1.16 -9.77 16 20 C -0.55 -30.98 9.50 67.96 0.65 -30.34 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 24 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 C 0.05 0.70 4.94 86.65 0.43 1.12 16 29 H 0.10 0.55 7.84 -2.91 -0.02 0.52 16 30 H 0.12 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.13 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.06 0.83 7.79 -2.39 -0.02 0.81 16 33 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.42 1.53 8.46 -92.71 -0.78 0.74 16 35 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.09 0.56 6.90 -2.39 -0.02 0.54 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.97 7.66 -2.39 -0.02 0.96 16 39 H 0.06 1.57 7.92 -2.38 -0.02 1.55 16 40 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 41 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.42 6.40 8.53 -92.70 -0.79 5.61 16 43 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 44 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 46 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 47 H 0.09 0.74 7.89 -2.38 -0.02 0.72 16 Total: -1.00 -85.80 404.69 -1.94 -87.73 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.60 Total: 17.05 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.57 Total: 0.80 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -8.68 Total: -98.52 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.10 Total: -42.58 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.80 -1.94 -87.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.938 kcal (2) G-P(sol) polarization free energy of solvation -85.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds