Wall clock time and date at job start Wed Apr 1 2020 00:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00075 * 2 1 4 4 N 1.46500 * 109.46841 * 125.00433 * 3 2 1 5 5 C 1.34772 * 120.00062 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00053 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47404 * 299.99946 * 7 5 4 9 9 C 1.53001 * 109.47103 * 60.00232 * 7 5 4 10 10 N 1.46901 * 109.46870 * 180.02562 * 7 5 4 11 11 C 1.47437 * 111.00223 * 59.15743 * 10 7 5 12 12 C 1.54320 * 107.23257 * 123.25511 * 11 10 7 13 13 C 1.55138 * 103.02210 * 22.28526 * 12 11 10 14 14 H 1.09001 * 110.98913 * 82.43214 * 13 12 11 15 15 N 1.46491 * 110.99739 * 206.25674 * 13 12 11 16 16 C 1.34779 * 119.99871 * 267.27056 * 15 13 12 17 17 O 1.21283 * 119.99975 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00127 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99951 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99763 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00220 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00124 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47248 * 89.99666 * 24 22 20 26 26 H 1.48497 * 109.47444 * 210.00203 * 24 22 20 27 27 H 1.48509 * 109.46749 * 329.99991 * 24 22 20 28 28 C 1.47846 * 110.99547 * 180.02562 * 10 7 5 29 29 H 1.08001 * 120.00242 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99959 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99652 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46968 * 5.00725 * 3 2 1 33 33 H 1.08999 * 109.47206 * 245.00571 * 3 2 1 34 34 H 0.97002 * 119.99701 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46857 * 299.99815 * 9 7 5 36 36 H 1.08999 * 109.47224 * 59.99604 * 9 7 5 37 37 H 1.08995 * 109.46995 * 179.97438 * 9 7 5 38 38 H 1.08998 * 109.89349 * 242.66131 * 11 10 7 39 39 H 1.08998 * 109.88725 * 3.69037 * 11 10 7 40 40 H 1.09000 * 110.70582 * 140.66816 * 12 11 10 41 41 H 1.08999 * 110.70796 * 263.73072 * 12 11 10 42 42 H 0.97005 * 120.00669 * 87.25830 * 15 13 12 43 43 H 1.08996 * 109.46719 * 299.99929 * 18 16 15 44 44 H 1.09003 * 109.46932 * 59.99259 * 18 16 15 45 45 H 0.97000 * 119.99865 * 180.02562 * 23 22 20 46 46 H 1.08995 * 110.38030 * 332.46412 * 28 10 7 47 47 H 1.09000 * 110.37255 * 94.81067 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7784 2.4088 1.3335 6 8 3.7139 3.3561 0.5790 7 6 4.7350 2.4365 2.4977 8 1 4.1770 2.3388 3.4289 9 6 5.7248 1.2766 2.3721 10 7 5.4687 3.7091 2.4983 11 6 4.5433 4.8526 2.5982 12 6 4.9606 5.6714 3.8379 13 6 6.4438 5.2651 4.0422 14 1 7.0998 5.8400 3.3885 15 7 6.8408 5.4151 5.4443 16 6 7.4045 6.5645 5.8657 17 8 7.5835 7.4744 5.0841 18 6 7.8125 6.7191 7.3083 19 16 8.5339 8.3601 7.5587 20 6 8.9088 8.2704 9.2780 21 1 8.6806 7.3732 9.8343 22 6 9.4974 9.3526 9.9174 23 7 9.7779 9.2854 11.2017 24 14 9.8915 10.9046 8.9553 25 1 8.7280 11.8260 9.0040 26 1 11.0759 11.5708 9.5540 27 1 10.1838 10.5506 7.5430 28 6 6.4193 3.7720 3.6289 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4026 -0.9314 34 1 3.0446 0.5745 1.7355 35 1 5.1800 0.3325 2.3718 36 1 6.2828 1.3743 1.4409 37 1 6.4169 1.2969 3.2138 38 1 4.6188 5.4701 1.7033 39 1 3.5210 4.4931 2.7153 40 1 4.8776 6.7401 3.6397 41 1 4.3594 5.3936 4.7036 42 1 6.6979 4.6873 6.0695 43 1 6.9370 6.6053 7.9475 44 1 8.5488 5.9563 7.5614 45 1 10.1889 10.0419 11.6486 46 1 6.0670 3.1553 4.4557 47 1 7.4105 3.4499 3.3096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:05 Heat of formation + Delta-G solvation = -42.117255 kcal Electronic energy + Delta-G solvation = -26566.155984 eV Core-core repulsion = 22682.861250 eV Total energy + Delta-G solvation = -3883.294734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78314 -39.58781 -38.27553 -36.23898 -34.77858 -33.54083 -32.48776 -32.43256 -29.93514 -29.04944 -27.88073 -26.84196 -25.61413 -24.05212 -21.69355 -21.36190 -21.01807 -20.57080 -19.92876 -17.93346 -17.50205 -17.15100 -16.70665 -16.37388 -16.10785 -15.70154 -15.00367 -14.98855 -14.86756 -14.67467 -14.50550 -13.85059 -13.76688 -13.71772 -13.57802 -13.28517 -12.93475 -12.84684 -12.79715 -12.59595 -12.43767 -12.21602 -11.77258 -11.71877 -11.58193 -11.54070 -11.26320 -11.00747 -10.91031 -10.60340 -10.45901 -9.94821 -9.85882 -9.55064 -9.49934 -9.03746 -8.98533 -8.64858 -8.50290 -6.92105 -6.29269 -4.01071 1.45652 2.25574 2.65054 2.80998 2.94351 3.24105 3.33702 3.51069 3.55091 3.76134 4.14066 4.24099 4.32675 4.33409 4.46052 4.50906 4.60840 4.65063 4.73809 4.92211 4.97494 4.99590 5.04896 5.09979 5.17840 5.19041 5.22348 5.24322 5.31950 5.41527 5.59526 5.68296 5.74794 5.81918 5.86403 5.90457 5.92294 5.99752 6.07454 6.10816 6.45386 6.56293 6.64267 7.04114 7.57709 7.82794 7.93720 8.40910 8.47392 9.17052 10.79920 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.001658 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.975312 B =16887.605110 C =17050.409276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.731 5.731 5 C 0.517 3.483 6 O -0.516 6.516 7 C 0.060 3.940 8 H 0.068 0.932 9 C -0.143 4.143 10 N -0.505 5.505 11 C 0.058 3.942 12 C -0.158 4.158 13 C 0.140 3.860 14 H 0.108 0.892 15 N -0.729 5.729 16 C 0.533 3.467 17 O -0.516 6.516 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.039 3.961 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.053 0.947 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.529 -23.846 -19.892 35.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.385 5.385 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.052 4.052 8 H 0.085 0.915 9 C -0.201 4.201 10 N -0.230 5.230 11 C -0.069 4.069 12 C -0.198 4.198 13 C 0.034 3.966 14 H 0.126 0.874 15 N -0.383 5.383 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.089 4.089 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.918 -21.490 -22.077 34.678 hybrid contribution -0.630 -1.261 2.188 2.603 sum -16.549 -22.751 -19.889 34.453 Atomic orbital electron populations 1.24013 0.95807 1.02544 0.97836 1.23000 0.96245 0.98077 1.02355 1.20395 0.91757 0.95555 0.89856 1.45976 1.41295 1.20173 1.31045 1.20490 0.80480 0.82283 0.86508 1.90740 1.66987 1.34883 1.46424 1.21797 0.94570 0.92883 0.95947 0.91454 1.21830 0.98964 0.95186 1.04128 1.63441 1.16504 1.00628 1.42470 1.22715 0.94299 0.91643 0.98255 1.23278 0.96395 1.01965 0.98182 1.21972 0.95766 0.95434 0.83475 0.87411 1.45864 1.64582 1.17644 1.10163 1.20300 0.76170 0.81640 0.90027 1.90710 1.52964 1.39349 1.55920 1.23281 1.04588 1.04940 0.94668 1.84816 1.78659 1.14078 1.13887 1.22317 1.47261 1.05768 0.91623 0.89410 1.24705 0.93755 0.98314 0.94473 1.69938 1.40944 1.31927 1.08894 0.86738 0.79094 0.83447 0.82598 1.19209 1.19920 1.15899 1.23289 0.97764 0.95941 0.91924 0.87793 0.88114 0.86639 0.91078 0.90550 0.76539 0.91750 0.90896 0.91014 0.89326 0.92973 0.89843 0.91253 0.76736 0.88537 0.88417 0.91941 0.92844 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.55 14.32 29.01 0.42 -0.13 16 2 C -0.18 -0.65 9.63 -36.03 -0.35 -1.00 16 3 C 0.15 0.84 6.11 -5.19 -0.03 0.81 16 4 N -0.73 -4.17 5.44 -61.47 -0.33 -4.50 16 5 C 0.52 4.55 6.53 -10.99 -0.07 4.48 16 6 O -0.52 -6.67 14.72 5.56 0.08 -6.59 16 7 C 0.06 0.44 2.09 -68.86 -0.14 0.29 16 8 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 9 C -0.14 -0.74 8.99 37.16 0.33 -0.40 16 10 N -0.51 -4.88 4.84 -224.66 -1.09 -5.96 16 11 C 0.06 0.63 5.22 -2.84 -0.01 0.61 16 12 C -0.16 -1.76 6.64 -24.91 -0.17 -1.92 16 13 C 0.14 1.61 3.42 -65.78 -0.22 1.38 16 14 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 15 N -0.73 -8.94 5.20 -51.72 -0.27 -9.21 16 16 C 0.53 9.28 7.85 -10.98 -0.09 9.19 16 17 O -0.52 -11.06 15.50 5.55 0.09 -10.98 16 18 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 19 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 20 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 24 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 28 C 0.04 0.34 5.06 -2.28 -0.01 0.33 16 29 H 0.10 0.23 8.06 -52.49 -0.42 -0.19 16 30 H 0.10 0.34 7.84 -52.49 -0.41 -0.08 16 31 H 0.12 0.29 8.06 -52.49 -0.42 -0.13 16 32 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.40 1.22 7.88 -40.82 -0.32 0.90 16 35 H 0.06 0.19 7.57 -51.93 -0.39 -0.20 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.33 7.08 -51.93 -0.37 -0.03 16 38 H 0.09 1.10 8.04 -51.93 -0.42 0.68 16 39 H 0.05 0.55 6.86 -51.93 -0.36 0.19 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.40 3.66 8.57 -40.82 -0.35 3.31 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.05 0.36 7.47 -51.93 -0.39 -0.02 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -36.20 398.63 -8.96 -45.16 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.60 Total: 0.75 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 0.09 Total: -0.48 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.91 Total: -45.42 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.17 Total: -17.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.20 -8.96 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.042 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds