Wall clock time and date at job start Wed Apr 1 2020 00:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00075 * 2 1 4 4 N 1.46500 * 109.46841 * 125.00433 * 3 2 1 5 5 C 1.34772 * 120.00062 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00053 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47404 * 299.99946 * 7 5 4 9 9 C 1.53001 * 109.47103 * 60.00232 * 7 5 4 10 10 N 1.46901 * 109.46870 * 180.02562 * 7 5 4 11 11 C 1.47437 * 111.00223 * 59.15743 * 10 7 5 12 12 C 1.54320 * 107.23257 * 123.25511 * 11 10 7 13 13 C 1.55138 * 103.02210 * 22.28526 * 12 11 10 14 14 H 1.09001 * 110.98913 * 82.43214 * 13 12 11 15 15 N 1.46491 * 110.99739 * 206.25674 * 13 12 11 16 16 C 1.34779 * 119.99871 * 267.27056 * 15 13 12 17 17 O 1.21283 * 119.99975 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00127 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99951 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99763 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00220 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00124 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47248 * 89.99666 * 24 22 20 26 26 H 1.48497 * 109.47444 * 210.00203 * 24 22 20 27 27 H 1.48509 * 109.46749 * 329.99991 * 24 22 20 28 28 C 1.47846 * 110.99547 * 180.02562 * 10 7 5 29 29 H 1.08001 * 120.00242 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99959 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99652 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46968 * 5.00725 * 3 2 1 33 33 H 1.08999 * 109.47206 * 245.00571 * 3 2 1 34 34 H 0.97002 * 119.99701 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46857 * 299.99815 * 9 7 5 36 36 H 1.08999 * 109.47224 * 59.99604 * 9 7 5 37 37 H 1.08995 * 109.46995 * 179.97438 * 9 7 5 38 38 H 1.08998 * 109.89349 * 242.66131 * 11 10 7 39 39 H 1.08998 * 109.88725 * 3.69037 * 11 10 7 40 40 H 1.09000 * 110.70582 * 140.66816 * 12 11 10 41 41 H 1.08999 * 110.70796 * 263.73072 * 12 11 10 42 42 H 0.97005 * 120.00669 * 87.25830 * 15 13 12 43 43 H 1.08996 * 109.46719 * 299.99929 * 18 16 15 44 44 H 1.09003 * 109.46932 * 59.99259 * 18 16 15 45 45 H 0.97000 * 119.99865 * 180.02562 * 23 22 20 46 46 H 1.08995 * 110.38030 * 332.46412 * 28 10 7 47 47 H 1.09000 * 110.37255 * 94.81067 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7784 2.4088 1.3335 6 8 3.7139 3.3561 0.5790 7 6 4.7350 2.4365 2.4977 8 1 4.1770 2.3388 3.4289 9 6 5.7248 1.2766 2.3721 10 7 5.4687 3.7091 2.4983 11 6 4.5433 4.8526 2.5982 12 6 4.9606 5.6714 3.8379 13 6 6.4438 5.2651 4.0422 14 1 7.0998 5.8400 3.3885 15 7 6.8408 5.4151 5.4443 16 6 7.4045 6.5645 5.8657 17 8 7.5835 7.4744 5.0841 18 6 7.8125 6.7191 7.3083 19 16 8.5339 8.3601 7.5587 20 6 8.9088 8.2704 9.2780 21 1 8.6806 7.3732 9.8343 22 6 9.4974 9.3526 9.9174 23 7 9.7779 9.2854 11.2017 24 14 9.8915 10.9046 8.9553 25 1 8.7280 11.8260 9.0040 26 1 11.0759 11.5708 9.5540 27 1 10.1838 10.5506 7.5430 28 6 6.4193 3.7720 3.6289 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4026 -0.9314 34 1 3.0446 0.5745 1.7355 35 1 5.1800 0.3325 2.3718 36 1 6.2828 1.3743 1.4409 37 1 6.4169 1.2969 3.2138 38 1 4.6188 5.4701 1.7033 39 1 3.5210 4.4931 2.7153 40 1 4.8776 6.7401 3.6397 41 1 4.3594 5.3936 4.7036 42 1 6.6979 4.6873 6.0695 43 1 6.9370 6.6053 7.9475 44 1 8.5488 5.9563 7.5614 45 1 10.1889 10.0419 11.6486 46 1 6.0670 3.1553 4.4557 47 1 7.4105 3.4499 3.3096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:04 Heat of formation + Delta-G solvation = -70.871204 kcal Electronic energy + Delta-G solvation = -26567.402849 eV Core-core repulsion = 22682.861250 eV Total energy + Delta-G solvation = -3884.541599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53935 -40.70788 -39.23874 -36.77633 -35.76895 -34.66786 -34.21739 -33.17723 -31.21532 -29.79043 -28.88005 -27.82858 -27.30965 -24.67785 -22.60575 -22.24748 -21.74332 -21.44354 -20.50201 -19.89513 -18.17779 -18.04981 -17.84617 -17.20191 -17.03259 -16.90254 -16.51451 -16.31588 -16.02639 -15.42210 -15.26320 -15.11954 -14.88123 -14.60496 -14.57175 -14.34884 -14.10465 -13.76951 -13.52719 -13.36287 -13.34342 -13.18165 -13.03397 -12.98968 -12.65044 -12.55471 -12.39687 -12.27241 -12.05366 -11.86603 -11.80639 -11.16840 -11.03742 -10.94707 -10.52232 -10.48526 -10.15969 -10.04002 -9.35504 -8.99041 -8.51241 -6.21743 0.98855 1.15997 1.31474 1.46911 1.54859 1.54996 1.61070 2.06544 2.25092 2.33281 2.71231 2.87309 2.95585 3.47327 3.61500 3.80139 3.84976 3.88344 3.97896 4.08715 4.14082 4.17882 4.23467 4.25028 4.30260 4.48035 4.52017 4.55676 4.73048 4.78293 4.82127 4.89542 4.91692 4.99670 5.01354 5.14736 5.28051 5.36118 5.42089 5.63925 5.71237 5.77110 5.84068 5.91126 6.11942 6.46030 6.56025 6.94439 7.19574 7.25257 8.61009 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.001658 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.975312 B =16887.605110 C =17050.409276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.714 5.714 5 C 0.512 3.488 6 O -0.568 6.568 7 C 0.061 3.939 8 H 0.092 0.908 9 C -0.139 4.139 10 N -0.523 5.523 11 C 0.071 3.929 12 C -0.152 4.152 13 C 0.137 3.863 14 H 0.079 0.921 15 N -0.700 5.700 16 C 0.537 3.463 17 O -0.562 6.562 18 C -0.110 4.110 19 S -0.180 6.180 20 C -0.528 4.528 21 H 0.064 0.936 22 C 0.048 3.952 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.238 1.238 28 C 0.051 3.949 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.416 0.584 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.419 0.581 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.277 0.723 46 H 0.085 0.915 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -26.615 -19.951 37.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.368 5.368 5 C 0.298 3.702 6 O -0.445 6.445 7 C -0.051 4.051 8 H 0.109 0.891 9 C -0.197 4.197 10 N -0.249 5.249 11 C -0.058 4.058 12 C -0.192 4.192 13 C 0.031 3.969 14 H 0.097 0.903 15 N -0.354 5.354 16 C 0.323 3.677 17 O -0.440 6.440 18 C -0.260 4.260 19 S 0.047 5.953 20 C -0.675 4.675 21 H 0.082 0.918 22 C -0.158 4.158 23 N -0.554 5.554 24 Si 0.734 3.266 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.162 1.162 28 C -0.076 4.076 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.254 0.746 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.257 0.743 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.778 -24.363 -22.109 36.930 hybrid contribution -0.494 -0.575 2.147 2.277 sum -17.271 -24.938 -19.962 36.314 Atomic orbital electron populations 1.24173 0.95818 1.03136 0.96935 1.22949 0.96250 0.97441 1.03077 1.20369 0.91483 0.96487 0.89328 1.45869 1.40143 1.19854 1.30954 1.20901 0.80684 0.82121 0.86469 1.90728 1.68653 1.36851 1.48314 1.21921 0.94853 0.92274 0.96045 0.89098 1.21855 0.98752 0.95332 1.03741 1.63369 1.16880 1.01339 1.43267 1.22464 0.94740 0.91855 0.96693 1.23191 0.96285 1.00734 0.98955 1.21988 0.95289 0.97561 0.82098 0.90297 1.45542 1.62395 1.16445 1.11001 1.20005 0.76355 0.82454 0.88880 1.90707 1.55289 1.41298 1.56699 1.23262 1.05401 1.00997 0.96383 1.84792 1.79682 1.19575 1.11252 1.22458 1.46809 1.04921 0.93354 0.91765 1.25520 0.93751 1.01193 0.95326 1.70010 1.41990 1.33178 1.10247 0.85896 0.79447 0.80050 0.81160 1.18819 1.18324 1.16197 1.23235 0.98144 0.93680 0.92564 0.86239 0.88557 0.84961 0.92468 0.91859 0.74647 0.89049 0.92581 0.89808 0.92100 0.92697 0.92101 0.89734 0.74295 0.86676 0.86448 0.91391 0.89721 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 14.32 67.78 0.97 0.16 16 2 C -0.18 -0.99 9.63 25.65 0.25 -0.74 16 3 C 0.15 1.58 6.11 85.63 0.52 2.10 16 4 N -0.71 -6.94 5.44 -466.79 -2.54 -9.48 16 5 C 0.51 8.44 6.53 87.66 0.57 9.01 16 6 O -0.57 -14.99 14.72 -3.03 -0.04 -15.04 16 7 C 0.06 0.72 2.09 44.17 0.09 0.81 16 8 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 9 C -0.14 -0.96 8.99 71.98 0.65 -0.31 16 10 N -0.52 -9.28 4.84 -864.68 -4.18 -13.46 16 11 C 0.07 1.49 5.22 86.65 0.45 1.94 16 12 C -0.15 -3.25 6.64 31.78 0.21 -3.04 16 13 C 0.14 2.96 3.42 46.39 0.16 3.11 16 14 H 0.08 2.23 7.54 -2.39 -0.02 2.22 16 15 N -0.70 -15.44 5.20 -435.94 -2.27 -17.70 16 16 C 0.54 17.97 7.85 87.66 0.69 18.66 16 17 O -0.56 -24.13 15.50 -3.04 -0.05 -24.18 16 18 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 19 S -0.18 -9.03 18.55 -56.49 -1.05 -10.07 16 20 C -0.53 -30.49 10.04 67.95 0.68 -29.81 16 21 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 22 C 0.05 2.78 5.50 84.86 0.47 3.25 16 23 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 24 Si 0.91 45.12 27.74 68.60 1.90 47.02 16 25 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 28 C 0.05 0.74 5.06 86.79 0.44 1.18 16 29 H 0.12 0.24 8.06 -2.91 -0.02 0.22 16 30 H 0.10 0.55 7.84 -2.91 -0.02 0.53 16 31 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 32 H 0.06 0.78 7.79 -2.39 -0.02 0.76 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.42 1.29 7.88 -92.71 -0.73 0.56 16 35 H 0.09 0.14 7.57 -2.39 -0.02 0.12 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.41 7.08 -2.39 -0.02 0.39 16 38 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 39 H 0.05 1.12 6.86 -2.39 -0.02 1.10 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.42 5.99 8.57 -92.70 -0.79 5.19 16 43 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 44 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 45 H 0.28 15.53 8.31 -92.71 -0.77 14.75 16 46 H 0.08 0.72 7.47 -2.39 -0.02 0.70 16 47 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -81.50 398.63 -1.92 -83.41 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.59 Total: 11.92 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.59 Total: 2.80 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -8.68 Total: -95.87 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.09 Total: -39.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.02 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.07 kcal Total: -81.50 -1.92 -83.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.542 kcal (2) G-P(sol) polarization free energy of solvation -81.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds