Wall clock time and date at job start Wed Apr 1 2020 00:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47108 * 2 1 4 4 C 1.50694 * 109.47316 * 239.99545 * 2 1 3 5 5 N 1.34779 * 119.99871 * 60.00021 * 4 2 1 6 6 O 1.21284 * 119.99942 * 240.00347 * 4 2 1 7 7 N 1.46899 * 109.46983 * 119.99191 * 2 1 3 8 8 C 1.46813 * 111.00079 * 180.02562 * 7 2 1 9 9 C 1.53262 * 109.44865 * 170.80355 * 8 7 2 10 10 C 1.53223 * 108.61601 * 55.59289 * 9 8 7 11 11 C 1.52846 * 117.83593 * 162.97248 * 10 9 8 12 12 C 1.52756 * 117.79340 * 93.99927 * 10 9 8 13 13 H 1.09000 * 117.50960 * 0.32150 * 12 10 9 14 14 N 1.46506 * 117.50556 * 215.28945 * 12 10 9 15 15 C 1.34771 * 119.99932 * 155.11867 * 14 12 10 16 16 O 1.21289 * 120.00201 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00220 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47205 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99645 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99720 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00093 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.53224 * 114.74168 * 308.58107 * 10 9 8 28 28 C 1.46820 * 110.99954 * 55.30499 * 7 2 1 29 29 H 1.08992 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47353 * 300.00549 * 1 2 3 31 31 H 1.09003 * 109.46993 * 60.00266 * 1 2 3 32 32 H 0.96996 * 120.00179 * 0.02562 * 5 4 2 33 33 H 0.97001 * 119.99470 * 179.97438 * 5 4 2 34 34 H 1.08994 * 109.47404 * 50.81060 * 8 7 2 35 35 H 1.09002 * 109.47422 * 290.79201 * 8 7 2 36 36 H 1.09003 * 109.61412 * 295.85669 * 9 8 7 37 37 H 1.09000 * 109.61652 * 175.33112 * 9 8 7 38 38 H 1.08996 * 117.52538 * 144.80855 * 11 10 9 39 39 H 1.08999 * 117.51918 * 359.71766 * 11 10 9 40 40 H 0.97002 * 119.99952 * 335.11695 * 14 12 10 41 41 H 1.09004 * 109.46909 * 59.99989 * 17 15 14 42 42 H 1.08994 * 109.46860 * 300.00327 * 17 15 14 43 43 H 0.96993 * 120.00092 * 359.97438 * 22 21 19 44 44 H 1.09004 * 109.60730 * 171.15741 * 27 10 9 45 45 H 1.08999 * 109.61408 * 291.67933 * 27 10 9 46 46 H 1.08999 * 109.46831 * 309.19373 * 28 7 2 47 47 H 1.09000 * 109.47241 * 69.20298 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 7 1.7067 -0.2501 -2.4545 6 8 2.7296 -1.6966 -1.1190 7 7 2.0196 -0.6923 1.1995 8 6 3.4872 -0.7114 1.2338 9 6 3.9591 -1.2311 2.5962 10 6 3.3245 -2.6037 2.8427 11 6 3.9389 -3.4900 3.9259 12 6 4.1284 -3.8413 2.4484 13 1 5.1164 -3.6832 2.0161 14 7 3.3868 -4.9918 1.9261 15 6 4.0008 -5.8789 1.1184 16 8 5.1674 -5.7252 0.8243 17 6 3.2382 -7.0627 0.5815 18 16 4.3289 -8.0594 -0.4639 19 6 3.2119 -9.3353 -0.9425 20 1 2.1926 -9.3225 -0.5858 21 6 3.6418 -10.3562 -1.7789 22 7 4.8840 -10.3715 -2.2142 23 14 2.4575 -11.7085 -2.2869 24 1 1.7617 -11.3131 -3.5379 25 1 1.4571 -11.9207 -1.2101 26 1 3.2119 -12.9668 -2.5166 27 6 1.8043 -2.6501 2.6567 28 6 1.4594 -2.0464 1.2910 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1494 0.5388 -2.5436 33 1 2.0305 -0.7072 -3.2464 34 1 3.8674 0.2982 1.0784 35 1 3.8606 -1.3658 0.4461 36 1 3.6493 -0.5389 3.3792 37 1 5.0451 -1.3249 2.5960 38 1 3.2625 -4.1148 4.5091 39 1 4.8022 -3.1006 4.4654 40 1 2.4539 -5.1150 2.1616 41 1 2.3911 -6.7121 -0.0081 42 1 2.8767 -7.6690 1.4120 43 1 5.4988 -9.6691 -1.9507 44 1 1.4622 -3.6843 2.6965 45 1 1.3214 -2.0718 3.4445 46 1 0.3764 -1.9999 1.1769 47 1 1.8817 -2.6684 0.5019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266366164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:53 Heat of formation + Delta-G solvation = -46.676744 kcal Electronic energy + Delta-G solvation = -28202.929517 eV Core-core repulsion = 24319.437068 eV Total energy + Delta-G solvation = -3883.492449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93083 -39.70544 -38.31825 -36.46520 -34.34271 -33.25798 -32.49024 -31.76243 -31.17815 -29.22616 -28.08653 -24.91006 -24.80878 -23.30820 -22.44336 -22.03533 -20.32953 -20.28097 -19.04512 -18.29595 -17.74423 -17.02801 -16.57499 -16.28723 -15.82939 -15.34154 -15.06589 -14.92005 -14.69951 -14.50203 -14.19534 -14.03657 -13.83378 -13.41844 -13.25286 -12.89637 -12.79290 -12.42738 -12.35779 -12.35159 -12.30424 -11.89528 -11.77971 -11.72452 -11.59207 -11.20270 -10.88829 -10.68341 -10.63705 -10.49176 -10.17018 -9.89766 -9.87452 -9.53935 -9.41221 -8.97998 -8.51528 -8.34019 -8.17446 -6.62056 -6.59019 -3.95886 2.30866 2.93687 2.99820 3.21084 3.36166 3.41079 3.50761 3.56399 3.63602 3.82144 4.27932 4.41008 4.50543 4.56473 4.63779 4.68361 4.72456 4.79506 5.04577 5.07108 5.13526 5.25701 5.26706 5.35184 5.38760 5.43016 5.49829 5.54527 5.61139 5.66949 5.72949 5.76510 5.82297 5.84692 5.98432 6.01661 6.06539 6.11516 6.17512 6.49948 6.68790 6.70494 6.82946 7.01811 7.70554 7.95827 7.97201 8.53596 8.60423 9.30812 10.85122 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.002815 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.273150 B = 9944.405632 C =11172.805607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.108 0.892 4 C 0.481 3.519 5 N -0.856 5.856 6 O -0.525 6.525 7 N -0.508 5.508 8 C 0.039 3.961 9 C -0.071 4.071 10 C -0.130 4.130 11 C -0.187 4.187 12 C 0.101 3.899 13 H 0.134 0.866 14 N -0.705 5.705 15 C 0.536 3.464 16 O -0.516 6.516 17 C -0.130 4.130 18 S -0.114 6.114 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.035 3.965 22 N -0.885 5.885 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.280 1.280 27 C -0.072 4.072 28 C 0.038 3.962 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.397 0.603 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 26.832 8.471 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.126 0.874 4 C 0.264 3.736 5 N -0.421 5.421 6 O -0.400 6.400 7 N -0.231 5.231 8 C -0.089 4.089 9 C -0.109 4.109 10 C -0.131 4.131 11 C -0.226 4.226 12 C -0.006 4.006 13 H 0.151 0.849 14 N -0.357 5.357 15 C 0.322 3.678 16 O -0.390 6.390 17 C -0.281 4.281 18 S 0.112 5.888 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.519 5.519 23 Si 0.914 3.086 24 H -0.211 1.211 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.110 4.110 28 C -0.089 4.089 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.227 0.773 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.232 0.768 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.348 25.302 7.766 28.069 hybrid contribution -1.788 0.961 0.269 2.048 sum -11.136 26.263 8.034 29.636 Atomic orbital electron populations 1.21896 0.92052 1.03274 1.03083 1.21902 0.97337 0.99179 0.86628 0.87401 1.22223 0.80107 0.85044 0.86189 1.44093 1.55834 1.33664 1.08493 1.90786 1.37091 1.25911 1.86259 1.62248 1.09022 1.18453 1.33369 1.22375 0.86841 1.01138 0.98500 1.21133 0.99091 0.93698 0.96993 1.21966 0.95054 0.92536 1.03579 1.23579 1.03436 1.03021 0.92557 1.21651 0.97479 0.86633 0.94861 0.84880 1.45390 1.14391 1.25089 1.50873 1.20246 0.87442 0.82811 0.77317 1.90689 1.16460 1.74697 1.57155 1.23304 1.03466 0.97656 1.03664 1.84823 1.17502 1.26972 1.59469 1.23743 0.99732 1.12879 1.39179 0.91624 1.26054 0.99091 0.99343 0.93084 1.70758 1.04478 1.34933 1.41774 0.83287 0.74108 0.75148 0.76099 1.21092 1.21306 1.20511 1.21068 0.92626 1.00010 0.97315 1.22374 0.99373 0.89161 0.98019 0.91587 0.90326 0.91736 0.77320 0.76938 0.91538 0.90835 0.90860 0.91231 0.88608 0.88163 0.76791 0.89052 0.89002 0.90936 0.91839 0.90775 0.90777 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.73 37.16 0.32 -0.44 16 2 C 0.06 0.46 2.83 -68.87 -0.19 0.27 16 3 H 0.11 0.60 8.13 -51.93 -0.42 0.18 16 4 C 0.48 4.76 6.85 -10.99 -0.08 4.69 16 5 N -0.86 -5.42 8.77 31.22 0.27 -5.15 16 6 O -0.52 -7.97 12.54 5.55 0.07 -7.90 16 7 N -0.51 -4.75 4.61 -227.86 -1.05 -5.80 16 8 C 0.04 0.41 4.97 -3.74 -0.02 0.39 16 9 C -0.07 -0.70 5.87 -26.48 -0.16 -0.85 16 10 C -0.13 -1.38 2.02 -154.48 -0.31 -1.69 16 11 C -0.19 -1.96 9.93 -26.79 -0.27 -2.23 16 12 C 0.10 1.38 6.10 -68.03 -0.41 0.96 16 13 H 0.13 2.13 7.40 -51.93 -0.38 1.75 16 14 N -0.71 -10.69 5.35 -53.90 -0.29 -10.98 16 15 C 0.54 10.87 7.85 -10.99 -0.09 10.78 16 16 O -0.52 -12.52 15.43 5.55 0.09 -12.44 16 17 C -0.13 -2.80 6.16 36.01 0.22 -2.58 16 18 S -0.11 -3.20 19.60 -107.50 -2.11 -5.31 16 19 C -0.61 -18.05 9.50 30.94 0.29 -17.75 16 20 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 21 C 0.03 1.03 5.49 -17.43 -0.10 0.94 16 22 N -0.89 -28.19 13.67 55.49 0.76 -27.43 16 23 Si 1.09 25.56 29.92 -169.99 -5.09 20.47 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.07 -0.70 5.67 -26.49 -0.15 -0.85 16 28 C 0.04 0.40 4.77 -3.74 -0.02 0.38 16 29 H 0.07 0.43 6.14 -51.93 -0.32 0.11 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.40 1.12 8.25 -40.82 -0.34 0.79 16 33 H 0.40 2.65 8.93 -40.82 -0.36 2.29 16 34 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.07 1.05 5.60 -51.93 -0.29 0.76 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.40 4.94 6.85 -40.82 -0.28 4.66 16 41 H 0.09 1.86 8.14 -51.91 -0.42 1.44 16 42 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 43 H 0.28 9.07 7.12 -40.82 -0.29 8.78 16 44 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.67 5.72 -51.93 -0.30 0.38 16 47 H 0.07 0.94 5.97 -51.93 -0.31 0.63 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -38.66 382.74 -9.53 -48.19 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.01 Total: 8.57 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.95 Total: -7.99 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.31 Total: -49.37 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.16 Total: -20.33 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.09 Total: 20.47 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.11 Total: -5.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.66 -9.53 -48.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.516 kcal (2) G-P(sol) polarization free energy of solvation -38.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds