Wall clock time and date at job start Wed Apr 1 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47108 * 2 1 4 4 C 1.50694 * 109.47316 * 239.99545 * 2 1 3 5 5 N 1.34779 * 119.99871 * 60.00021 * 4 2 1 6 6 O 1.21284 * 119.99942 * 240.00347 * 4 2 1 7 7 N 1.46899 * 109.46983 * 119.99191 * 2 1 3 8 8 C 1.46813 * 111.00079 * 180.02562 * 7 2 1 9 9 C 1.53262 * 109.44865 * 170.80355 * 8 7 2 10 10 C 1.53223 * 108.61601 * 55.59289 * 9 8 7 11 11 C 1.52846 * 117.83593 * 162.97248 * 10 9 8 12 12 C 1.52756 * 117.79340 * 93.99927 * 10 9 8 13 13 H 1.09000 * 117.50960 * 0.32150 * 12 10 9 14 14 N 1.46506 * 117.50556 * 215.28945 * 12 10 9 15 15 C 1.34771 * 119.99932 * 155.11867 * 14 12 10 16 16 O 1.21289 * 120.00201 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00220 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47205 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99645 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99720 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00093 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.53224 * 114.74168 * 308.58107 * 10 9 8 28 28 C 1.46820 * 110.99954 * 55.30499 * 7 2 1 29 29 H 1.08992 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47353 * 300.00549 * 1 2 3 31 31 H 1.09003 * 109.46993 * 60.00266 * 1 2 3 32 32 H 0.96996 * 120.00179 * 0.02562 * 5 4 2 33 33 H 0.97001 * 119.99470 * 179.97438 * 5 4 2 34 34 H 1.08994 * 109.47404 * 50.81060 * 8 7 2 35 35 H 1.09002 * 109.47422 * 290.79201 * 8 7 2 36 36 H 1.09003 * 109.61412 * 295.85669 * 9 8 7 37 37 H 1.09000 * 109.61652 * 175.33112 * 9 8 7 38 38 H 1.08996 * 117.52538 * 144.80855 * 11 10 9 39 39 H 1.08999 * 117.51918 * 359.71766 * 11 10 9 40 40 H 0.97002 * 119.99952 * 335.11695 * 14 12 10 41 41 H 1.09004 * 109.46909 * 59.99989 * 17 15 14 42 42 H 1.08994 * 109.46860 * 300.00327 * 17 15 14 43 43 H 0.96993 * 120.00092 * 359.97438 * 22 21 19 44 44 H 1.09004 * 109.60730 * 171.15741 * 27 10 9 45 45 H 1.08999 * 109.61408 * 291.67933 * 27 10 9 46 46 H 1.08999 * 109.46831 * 309.19373 * 28 7 2 47 47 H 1.09000 * 109.47241 * 69.20298 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 7 1.7067 -0.2501 -2.4545 6 8 2.7296 -1.6966 -1.1190 7 7 2.0196 -0.6923 1.1995 8 6 3.4872 -0.7114 1.2338 9 6 3.9591 -1.2311 2.5962 10 6 3.3245 -2.6037 2.8427 11 6 3.9389 -3.4900 3.9259 12 6 4.1284 -3.8413 2.4484 13 1 5.1164 -3.6832 2.0161 14 7 3.3868 -4.9918 1.9261 15 6 4.0008 -5.8789 1.1184 16 8 5.1674 -5.7252 0.8243 17 6 3.2382 -7.0627 0.5815 18 16 4.3289 -8.0594 -0.4639 19 6 3.2119 -9.3353 -0.9425 20 1 2.1926 -9.3225 -0.5858 21 6 3.6418 -10.3562 -1.7789 22 7 4.8840 -10.3715 -2.2142 23 14 2.4575 -11.7085 -2.2869 24 1 1.7617 -11.3131 -3.5379 25 1 1.4571 -11.9207 -1.2101 26 1 3.2119 -12.9668 -2.5166 27 6 1.8043 -2.6501 2.6567 28 6 1.4594 -2.0464 1.2910 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1494 0.5388 -2.5436 33 1 2.0305 -0.7072 -3.2464 34 1 3.8674 0.2982 1.0784 35 1 3.8606 -1.3658 0.4461 36 1 3.6493 -0.5389 3.3792 37 1 5.0451 -1.3249 2.5960 38 1 3.2625 -4.1148 4.5091 39 1 4.8022 -3.1006 4.4654 40 1 2.4539 -5.1150 2.1616 41 1 2.3911 -6.7121 -0.0081 42 1 2.8767 -7.6690 1.4120 43 1 5.4988 -9.6691 -1.9507 44 1 1.4622 -3.6843 2.6965 45 1 1.3214 -2.0718 3.4445 46 1 0.3764 -1.9999 1.1769 47 1 1.8817 -2.6684 0.5019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266366164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:52 Heat of formation + Delta-G solvation = -78.705906 kcal Electronic energy + Delta-G solvation = -28204.318406 eV Core-core repulsion = 24319.437068 eV Total energy + Delta-G solvation = -3884.881337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75997 -40.91527 -39.54881 -37.37286 -35.12908 -34.78208 -34.49125 -32.62175 -31.97586 -30.77577 -28.89886 -27.12168 -25.56578 -24.09706 -23.54093 -22.90907 -21.78483 -20.98932 -20.51377 -19.87548 -18.54369 -18.08854 -17.80311 -17.40096 -16.70228 -16.55445 -16.50246 -16.06880 -15.90441 -15.74699 -15.47305 -15.11229 -14.95484 -14.91216 -14.53269 -14.12172 -13.98556 -13.83878 -13.71406 -13.37312 -13.14546 -13.10894 -12.79326 -12.75460 -12.45918 -12.35933 -11.96635 -11.95480 -11.74188 -11.60492 -11.45311 -11.27047 -11.16853 -11.13372 -10.71261 -10.61158 -10.36892 -9.71344 -9.16831 -8.96442 -8.91483 -6.31732 1.12550 1.41155 1.49020 1.57555 1.59503 1.78084 2.06958 2.31795 2.59361 2.75116 2.91923 2.99275 3.09377 3.61216 3.67659 3.73297 3.80616 3.87758 3.95532 4.02902 4.09372 4.19275 4.27681 4.33295 4.45475 4.51433 4.59139 4.72076 4.76335 4.80749 4.84470 4.89439 4.91786 4.99517 5.06925 5.15199 5.28636 5.28962 5.38507 5.44577 5.60458 5.84836 5.97920 6.03273 6.10811 6.34889 6.45417 7.03067 7.09857 7.33160 8.47010 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.002815 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.273150 B = 9944.405632 C =11172.805607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 H 0.133 0.867 4 C 0.474 3.526 5 N -0.840 5.840 6 O -0.586 6.586 7 N -0.498 5.498 8 C 0.041 3.959 9 C -0.071 4.071 10 C -0.111 4.111 11 C -0.159 4.159 12 C 0.057 3.943 13 H 0.100 0.900 14 N -0.678 5.678 15 C 0.535 3.465 16 O -0.567 6.567 17 C -0.107 4.107 18 S -0.194 6.194 19 C -0.615 4.615 20 H 0.075 0.925 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.141 2.859 24 H -0.267 1.267 25 H -0.261 1.261 26 H -0.277 1.277 27 C -0.072 4.072 28 C 0.040 3.960 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.418 0.582 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.413 0.587 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.260 0.740 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.016 28.748 10.282 34.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 H 0.151 0.849 4 C 0.258 3.742 5 N -0.404 5.404 6 O -0.466 6.466 7 N -0.221 5.221 8 C -0.087 4.087 9 C -0.109 4.109 10 C -0.113 4.113 11 C -0.198 4.198 12 C -0.049 4.049 13 H 0.118 0.882 14 N -0.330 5.330 15 C 0.321 3.679 16 O -0.445 6.445 17 C -0.258 4.258 18 S 0.032 5.968 19 C -0.762 4.762 20 H 0.093 0.907 21 C -0.222 4.222 22 N -0.548 5.548 23 Si 0.958 3.042 24 H -0.193 1.193 25 H -0.185 1.185 26 H -0.202 1.202 27 C -0.109 4.109 28 C -0.087 4.087 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.229 0.771 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.251 0.749 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.948 27.322 9.603 31.723 hybrid contribution -0.719 0.569 -0.279 0.958 sum -13.666 27.890 9.323 32.428 Atomic orbital electron populations 1.21906 0.89968 1.02880 1.04982 1.22146 0.98846 0.99528 0.84582 0.84935 1.22757 0.79288 0.84392 0.87720 1.43982 1.55018 1.33836 1.07552 1.90793 1.39931 1.28704 1.87161 1.62321 1.07941 1.17587 1.34239 1.22285 0.87828 1.00997 0.97577 1.21185 0.98954 0.93552 0.97192 1.22073 0.95577 0.91625 1.01993 1.23665 1.03853 1.01761 0.90496 1.21724 0.97130 0.88048 0.97962 0.88202 1.45076 1.14931 1.24153 1.48866 1.20037 0.86751 0.83219 0.77928 1.90672 1.18510 1.75924 1.59405 1.23189 1.02083 0.97436 1.03129 1.85085 1.20971 1.28844 1.61862 1.24068 1.00053 1.13006 1.39085 0.90664 1.27920 0.99798 1.01950 0.92576 1.70883 1.05585 1.34897 1.43404 0.82672 0.72414 0.71915 0.77161 1.19263 1.18543 1.20237 1.21142 0.91650 1.00682 0.97473 1.22317 1.00093 0.89219 0.97121 0.93031 0.89031 0.89290 0.75049 0.77093 0.90038 0.95049 0.88552 0.91617 0.86995 0.86767 0.74919 0.87637 0.86711 0.92926 0.91431 0.88504 0.89136 0.95688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.73 71.98 0.63 -0.43 16 2 C 0.06 0.79 2.83 44.17 0.12 0.91 16 3 H 0.13 1.07 8.13 -2.39 -0.02 1.05 16 4 C 0.47 9.31 6.85 87.65 0.60 9.91 16 5 N -0.84 -9.91 8.77 -173.53 -1.52 -11.43 16 6 O -0.59 -18.90 12.54 -3.04 -0.04 -18.93 16 7 N -0.50 -8.50 4.61 -874.81 -4.03 -12.53 16 8 C 0.04 0.85 4.97 86.41 0.43 1.28 16 9 C -0.07 -1.29 5.87 30.76 0.18 -1.11 16 10 C -0.11 -2.20 2.02 -52.16 -0.11 -2.31 16 11 C -0.16 -2.99 9.93 30.56 0.30 -2.69 16 12 C 0.06 1.59 6.10 44.92 0.27 1.87 16 13 H 0.10 3.47 7.40 -2.39 -0.02 3.45 16 14 N -0.68 -20.69 5.35 -442.83 -2.37 -23.06 16 15 C 0.53 22.44 7.85 87.66 0.69 23.13 16 16 O -0.57 -29.26 15.43 -3.06 -0.05 -29.30 16 17 C -0.11 -4.68 6.16 71.24 0.44 -4.24 16 18 S -0.19 -11.38 19.60 -56.49 -1.11 -12.49 16 19 C -0.61 -36.94 9.50 67.95 0.65 -36.30 16 20 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 21 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 22 N -0.91 -59.77 13.67 21.65 0.30 -59.47 16 23 Si 1.14 50.71 29.92 68.60 2.05 52.76 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 27 C -0.07 -1.22 5.67 30.75 0.17 -1.04 16 28 C 0.04 0.80 4.77 86.40 0.41 1.21 16 29 H 0.05 0.56 6.14 -2.39 -0.01 0.55 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.24 7.57 -2.39 -0.02 0.22 16 32 H 0.42 1.46 8.25 -92.71 -0.76 0.70 16 33 H 0.40 5.25 8.93 -92.71 -0.83 4.42 16 34 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 35 H 0.03 0.95 5.60 -2.39 -0.01 0.94 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 38 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.41 9.79 6.85 -92.71 -0.63 9.16 16 41 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 42 H 0.11 4.47 8.14 -2.40 -0.02 4.45 16 43 H 0.26 17.78 7.12 -92.71 -0.66 17.12 16 44 H 0.07 1.08 6.18 -2.39 -0.01 1.07 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 46 H 0.09 1.47 5.72 -2.39 -0.01 1.46 16 47 H 0.02 0.73 5.97 -2.39 -0.01 0.71 16 Total: -1.00 -90.75 382.74 -2.59 -93.34 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -1.09 Total: 31.64 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 5.26 Total: -10.51 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -7.62 Total: -106.50 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.09 Total: -48.24 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Atomic # 16 Polarization: -11.38 SS G_CDS: -1.11 Total: -12.49 kcal Total: -90.75 -2.59 -93.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.632 kcal (2) G-P(sol) polarization free energy of solvation -90.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds