Wall clock time and date at job start Wed Apr 1 2020 00:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47294 * 2 1 4 4 C 1.50704 * 109.46859 * 239.99936 * 2 1 3 5 5 N 1.34769 * 120.00241 * 59.99971 * 4 2 1 6 6 O 1.21289 * 119.99841 * 240.00319 * 4 2 1 7 7 N 1.46900 * 109.47326 * 120.00266 * 2 1 3 8 8 C 1.46812 * 111.00086 * 179.97438 * 7 2 1 9 9 C 1.53266 * 109.44377 * 170.79642 * 8 7 2 10 10 C 1.53220 * 108.62074 * 55.59279 * 9 8 7 11 11 C 1.52737 * 117.84694 * 162.98919 * 10 9 8 12 12 C 1.52768 * 117.79166 * 93.99063 * 10 9 8 13 13 H 1.09001 * 117.53546 * 215.28217 * 12 10 9 14 14 N 1.46498 * 117.50426 * 0.35722 * 12 10 9 15 15 C 1.34777 * 119.99828 * 204.65468 * 14 12 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 C 1.53218 * 114.74191 * 308.58564 * 10 9 8 28 28 C 1.46817 * 111.00204 * 55.29859 * 7 2 1 29 29 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47037 * 299.99737 * 1 2 3 31 31 H 1.08994 * 109.47519 * 59.99723 * 1 2 3 32 32 H 0.97007 * 119.99779 * 0.02562 * 5 4 2 33 33 H 0.96998 * 120.00645 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47523 * 50.80962 * 8 7 2 35 35 H 1.08995 * 109.47325 * 290.78633 * 8 7 2 36 36 H 1.08998 * 109.61849 * 295.85135 * 9 8 7 37 37 H 1.09006 * 109.61306 * 175.33085 * 9 8 7 38 38 H 1.09000 * 117.50391 * 144.78561 * 11 10 9 39 39 H 1.08996 * 117.52582 * 359.72601 * 11 10 9 40 40 H 0.97001 * 120.00384 * 24.93914 * 14 12 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.61485 * 171.15444 * 27 10 9 45 45 H 1.09002 * 109.61022 * 291.66914 * 27 10 9 46 46 H 1.08999 * 109.46816 * 309.19574 * 28 7 2 47 47 H 1.08988 * 109.47392 * 69.20997 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 7 1.7067 -0.2501 -2.4546 6 8 2.7295 -1.6966 -1.1192 7 7 2.0197 -0.6925 1.1994 8 6 3.4873 -0.7126 1.2330 9 6 3.9594 -1.2324 2.5954 10 6 3.3239 -2.6045 2.8425 11 6 3.9372 -3.4902 3.9251 12 6 4.1268 -3.8428 2.4480 13 1 3.5747 -4.6988 2.0600 14 7 5.4549 -3.6312 1.8669 15 6 5.9966 -4.5691 1.0648 16 8 5.3826 -5.5859 0.8200 17 6 7.3654 -4.3543 0.4720 18 16 7.8103 -5.7796 -0.5510 19 6 9.4061 -5.2746 -1.1017 20 1 9.8112 -4.3250 -0.7849 21 6 10.1429 -6.0979 -1.9419 22 7 9.6494 -7.2556 -2.3277 23 14 11.8344 -5.5623 -2.5263 24 1 12.8632 -6.0382 -1.5669 25 1 12.1017 -6.1427 -3.8668 26 1 11.8830 -4.0805 -2.6097 27 6 1.8036 -2.6498 2.6571 28 6 1.4594 -2.0465 1.2908 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5435 33 1 2.0302 -0.7071 -3.2466 34 1 3.8682 0.2967 1.0773 35 1 3.8598 -1.3674 0.4453 36 1 3.6505 -0.5398 3.3783 37 1 5.0453 -1.3269 2.5946 38 1 3.2601 -4.1139 4.5087 39 1 4.8008 -3.1014 4.4646 40 1 5.9460 -2.8180 2.0627 41 1 7.3579 -3.4543 -0.1428 42 1 8.0949 -4.2403 1.2740 43 1 10.1641 -7.8307 -2.9151 44 1 1.4608 -3.6838 2.6973 45 1 1.3215 -2.0711 3.4450 46 1 0.3764 -2.0000 1.1767 47 1 1.8817 -2.6685 0.5017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266366165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:55 Heat of formation + Delta-G solvation = -41.174158 kcal Electronic energy + Delta-G solvation = -28139.065999 eV Core-core repulsion = 24255.812160 eV Total energy + Delta-G solvation = -3883.253839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89248 -39.63718 -38.23624 -36.42116 -34.30068 -33.13677 -32.38507 -31.90078 -30.97495 -29.05131 -28.12282 -25.45055 -24.79588 -23.31247 -22.39862 -21.98640 -20.38780 -20.09995 -18.98999 -17.91349 -17.56444 -16.97121 -16.36911 -16.30390 -15.55493 -15.42943 -14.99530 -14.78542 -14.76643 -14.58039 -14.29536 -14.11283 -13.89664 -13.33522 -13.12762 -12.82733 -12.78171 -12.57791 -12.41307 -12.29773 -12.11636 -11.78478 -11.69614 -11.56198 -11.16397 -11.03355 -10.98079 -10.73803 -10.61121 -10.59755 -10.46829 -9.87736 -9.85307 -9.71970 -9.29645 -9.02566 -8.43673 -8.30174 -8.17476 -6.44018 -6.17331 -3.87023 2.34240 3.05973 3.10861 3.24067 3.24896 3.30155 3.34634 3.55691 3.75922 3.88175 4.24505 4.43963 4.55374 4.60212 4.65586 4.73432 4.76662 4.85022 5.09189 5.15463 5.17554 5.19057 5.29927 5.39477 5.41896 5.48241 5.57505 5.64730 5.65649 5.71441 5.75651 5.79908 5.89150 5.96020 6.03259 6.08748 6.16232 6.20477 6.21720 6.53295 6.72555 6.79018 6.86513 7.04903 7.63679 7.80775 8.00523 8.39545 8.71865 9.27745 10.90163 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.002750 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.627010 B =10180.907808 C =11435.940998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.108 0.892 4 C 0.481 3.519 5 N -0.857 5.857 6 O -0.524 6.524 7 N -0.508 5.508 8 C 0.039 3.961 9 C -0.072 4.072 10 C -0.131 4.131 11 C -0.188 4.188 12 C 0.102 3.898 13 H 0.133 0.867 14 N -0.707 5.707 15 C 0.537 3.463 16 O -0.516 6.516 17 C -0.152 4.152 18 S -0.058 6.058 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.071 4.071 28 C 0.038 3.962 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.475 20.194 8.232 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 H 0.126 0.874 4 C 0.264 3.736 5 N -0.421 5.421 6 O -0.399 6.399 7 N -0.231 5.231 8 C -0.089 4.089 9 C -0.110 4.110 10 C -0.132 4.132 11 C -0.227 4.227 12 C -0.005 4.005 13 H 0.151 0.849 14 N -0.359 5.359 15 C 0.323 3.677 16 O -0.390 6.390 17 C -0.303 4.303 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.109 4.109 28 C -0.089 4.089 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.231 0.769 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.159 17.938 8.387 28.979 hybrid contribution 2.225 1.793 -1.115 3.068 sum -18.934 19.731 7.272 28.296 Atomic orbital electron populations 1.21891 0.92093 1.03216 1.03047 1.21903 0.97297 0.99208 0.86667 0.87434 1.22223 0.80117 0.85085 0.86175 1.44094 1.55850 1.33662 1.08504 1.90792 1.36962 1.25925 1.86242 1.62260 1.08980 1.18518 1.33341 1.22372 0.86895 1.01168 0.98415 1.21065 0.98657 0.94069 0.97185 1.21944 0.95062 0.92552 1.03668 1.23559 1.03112 1.03368 0.92638 1.21635 0.85883 0.98859 0.94137 0.84888 1.45424 1.17621 1.22297 1.50541 1.20271 0.87390 0.82652 0.77343 1.90685 1.62454 1.27221 1.58623 1.23521 0.95413 1.07484 1.03870 1.85398 1.20890 1.19296 1.57570 1.22876 1.02722 1.07731 1.34936 0.90979 1.24993 0.98707 0.94572 0.95361 1.70023 1.37649 1.09644 1.33020 0.86171 0.82454 0.78785 0.78096 1.20281 1.20776 1.19721 1.21133 0.92261 1.00510 0.97017 1.22384 0.99299 0.89074 0.98186 0.91605 0.90354 0.91777 0.77352 0.76934 0.91599 0.90579 0.90905 0.91793 0.88226 0.88649 0.76851 0.89294 0.89278 0.92229 0.91254 0.90869 0.90821 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.73 37.16 0.32 -0.42 16 2 C 0.06 0.46 2.83 -68.86 -0.19 0.27 16 3 H 0.11 0.63 8.13 -51.93 -0.42 0.21 16 4 C 0.48 4.79 6.85 -10.99 -0.08 4.72 16 5 N -0.86 -5.48 8.77 31.22 0.27 -5.21 16 6 O -0.52 -7.99 12.53 5.55 0.07 -7.92 16 7 N -0.51 -4.80 4.61 -227.85 -1.05 -5.85 16 8 C 0.04 0.42 4.96 -3.73 -0.02 0.40 16 9 C -0.07 -0.71 5.67 -26.48 -0.15 -0.86 16 10 C -0.13 -1.40 2.02 -154.54 -0.31 -1.72 16 11 C -0.19 -1.99 9.93 -26.85 -0.27 -2.26 16 12 C 0.10 1.41 6.10 -68.03 -0.42 0.99 16 13 H 0.13 2.14 7.40 -51.93 -0.38 1.75 16 14 N -0.71 -10.84 5.35 -53.90 -0.29 -11.13 16 15 C 0.54 10.97 7.85 -10.98 -0.09 10.89 16 16 O -0.52 -12.60 15.43 5.55 0.09 -12.52 16 17 C -0.15 -3.29 6.16 36.01 0.22 -3.07 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.69 9.50 30.94 0.29 -15.40 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.80 13.22 55.49 0.73 -26.07 16 23 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 27 C -0.07 -0.70 5.87 -26.48 -0.16 -0.85 16 28 C 0.04 0.40 4.77 -3.73 -0.02 0.38 16 29 H 0.07 0.41 6.14 -51.93 -0.32 0.09 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 32 H 0.40 1.15 8.25 -40.82 -0.34 0.81 16 33 H 0.40 2.68 8.93 -40.82 -0.36 2.32 16 34 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.08 1.10 5.60 -51.93 -0.29 0.81 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.61 6.18 -51.93 -0.32 0.29 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.40 5.02 6.85 -40.82 -0.28 4.74 16 41 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 42 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.65 5.72 -51.93 -0.30 0.35 16 47 H 0.06 0.92 5.96 -51.94 -0.31 0.61 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -37.97 384.08 -9.63 -47.60 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.06 Total: 7.18 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.95 Total: -4.90 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.33 Total: -48.25 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.16 Total: -20.44 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.97 -9.63 -47.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.428 kcal (2) G-P(sol) polarization free energy of solvation -37.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds