Wall clock time and date at job start Wed Apr 1 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 C 1.50696 * 109.47678 * 120.00631 * 2 1 3 5 5 N 1.34774 * 119.99947 * 299.99733 * 4 2 1 6 6 O 1.21277 * 120.00138 * 120.00145 * 4 2 1 7 7 N 1.46903 * 109.47107 * 240.00858 * 2 1 3 8 8 C 1.46802 * 111.00465 * 179.97438 * 7 2 1 9 9 C 1.53266 * 109.45075 * 170.79649 * 8 7 2 10 10 C 1.53221 * 108.61346 * 55.59288 * 9 8 7 11 11 C 1.52841 * 117.85941 * 162.98058 * 10 9 8 12 12 C 1.52762 * 117.79237 * 94.00115 * 10 9 8 13 13 H 1.08998 * 117.50396 * 215.31804 * 12 10 9 14 14 N 1.46498 * 117.50428 * 0.34743 * 12 10 9 15 15 C 1.34777 * 119.99828 * 204.60453 * 14 12 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00053 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00174 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47356 * 89.99148 * 23 21 19 25 25 H 1.48497 * 109.47342 * 209.99750 * 23 21 19 26 26 H 1.48505 * 109.46847 * 329.99403 * 23 21 19 27 27 C 1.53212 * 114.74444 * 308.58204 * 10 9 8 28 28 C 1.46810 * 110.99981 * 55.29259 * 7 2 1 29 29 H 1.09000 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47240 * 299.99155 * 1 2 3 31 31 H 1.08992 * 109.47718 * 59.99487 * 1 2 3 32 32 H 0.97007 * 119.99824 * 0.02562 * 5 4 2 33 33 H 0.97001 * 119.99978 * 179.97438 * 5 4 2 34 34 H 1.09008 * 109.47481 * 50.80254 * 8 7 2 35 35 H 1.09000 * 109.47514 * 290.79037 * 8 7 2 36 36 H 1.09001 * 109.61070 * 295.85771 * 9 8 7 37 37 H 1.09000 * 109.61422 * 175.33276 * 9 8 7 38 38 H 1.08993 * 117.50002 * 144.80690 * 11 10 9 39 39 H 1.08998 * 117.54841 * 359.71553 * 11 10 9 40 40 H 0.97001 * 120.00384 * 24.88900 * 14 12 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.97000 * 120.00636 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.61415 * 171.15738 * 27 10 9 45 45 H 1.09000 * 109.61542 * 291.68318 * 27 10 9 46 46 H 1.08994 * 109.47818 * 309.19942 * 28 7 2 47 47 H 1.09002 * 109.47451 * 69.20998 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7069 -0.2502 2.4545 6 8 2.7297 -1.6965 1.1189 7 7 2.0196 -0.6923 -1.1996 8 6 3.4871 -0.7114 -1.2339 9 6 3.9592 -1.6313 -2.3653 10 6 3.3236 -1.1590 -3.6770 11 6 3.9372 -1.6535 -4.9866 12 6 4.1266 -0.1983 -4.5521 13 1 3.5741 0.5661 -5.0985 14 7 5.4546 0.1991 -4.0784 15 6 5.9969 1.3622 -4.4903 16 8 5.3833 2.0822 -5.2492 17 6 7.3657 1.7681 -4.0079 18 16 7.8113 3.3660 -4.7318 19 6 9.4070 3.5905 -4.0191 20 1 9.8118 2.8416 -3.3544 21 6 10.1443 4.7292 -4.3127 22 7 11.3365 4.8967 -3.7806 23 14 9.4446 6.0242 -5.4629 24 1 8.6793 7.0241 -4.6756 25 1 10.5548 6.7023 -6.1788 26 1 8.5431 5.3754 -6.4487 27 6 1.8034 -0.9758 -3.6235 28 6 1.4592 -0.0945 -2.4177 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.1489 0.5383 2.5436 33 1 2.0301 -0.7077 3.2464 34 1 3.8681 -1.0813 -0.2819 35 1 3.8597 0.2982 -1.4070 36 1 3.6502 -2.6556 -2.1570 37 1 5.0451 -1.5834 -2.4468 38 1 3.2599 -1.8463 -5.8185 39 1 4.8010 -2.3149 -4.9205 40 1 5.9455 -0.3768 -3.4715 41 1 7.3580 1.8513 -2.9212 42 1 8.0950 1.0161 -4.3095 43 1 11.8516 5.6927 -3.9854 44 1 1.4606 -0.4935 -4.5389 45 1 1.3213 -1.9475 -3.5162 46 1 0.3763 -0.0188 -2.3204 47 1 1.8815 0.9001 -2.5618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266366166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:57 Heat of formation + Delta-G solvation = -40.822755 kcal Electronic energy + Delta-G solvation = -27693.319338 eV Core-core repulsion = 23810.080738 eV Total energy + Delta-G solvation = -3883.238601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73877 -39.80326 -38.52783 -36.70262 -34.34186 -33.31906 -32.44577 -31.97448 -31.09457 -29.26711 -28.22525 -25.62762 -25.10359 -23.23745 -22.46096 -22.00024 -20.50667 -20.31247 -18.97453 -17.95747 -17.81587 -17.15664 -16.56733 -16.39989 -15.65867 -15.51451 -15.03122 -14.98330 -14.92532 -14.80767 -14.42020 -13.99615 -13.87325 -13.52029 -13.29781 -13.15098 -12.80542 -12.76696 -12.55744 -12.42815 -12.28564 -12.07395 -11.82719 -11.62649 -11.38005 -11.27457 -11.01914 -10.84891 -10.73406 -10.61541 -10.07253 -10.01700 -9.86979 -9.72688 -9.51179 -9.01263 -8.62223 -8.53281 -8.51198 -6.92668 -6.29550 -4.01350 2.28166 2.72749 2.86667 2.96609 3.26559 3.32421 3.49686 3.56753 3.63511 3.75461 4.32322 4.37309 4.47679 4.54904 4.58483 4.64037 4.69221 4.71331 4.75713 5.02678 5.04671 5.09448 5.13453 5.18958 5.23748 5.38388 5.39815 5.40532 5.52556 5.61648 5.70424 5.74875 5.76773 5.79626 5.88101 5.91860 6.00726 6.05751 6.11278 6.41207 6.59713 6.66414 6.84454 6.98317 7.60007 7.91861 7.93543 8.41279 8.47612 9.16514 10.79739 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.002513 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.913143 B =11138.973024 C =12151.463035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 H 0.068 0.932 4 C 0.522 3.478 5 N -0.857 5.857 6 O -0.521 6.521 7 N -0.516 5.516 8 C 0.046 3.954 9 C -0.070 4.070 10 C -0.133 4.133 11 C -0.184 4.184 12 C 0.095 3.905 13 H 0.134 0.866 14 N -0.706 5.706 15 C 0.535 3.465 16 O -0.519 6.519 17 C -0.124 4.124 18 S -0.140 6.140 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.072 4.072 28 C 0.052 3.948 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.402 0.598 34 H 0.102 0.898 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.399 0.601 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.648 -13.579 9.050 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 H 0.085 0.915 4 C 0.307 3.693 5 N -0.421 5.421 6 O -0.396 6.396 7 N -0.242 5.242 8 C -0.081 4.081 9 C -0.108 4.108 10 C -0.134 4.134 11 C -0.223 4.223 12 C -0.012 4.012 13 H 0.152 0.848 14 N -0.359 5.359 15 C 0.321 3.679 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.086 5.914 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.110 4.110 28 C -0.075 4.075 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.229 0.771 33 H 0.233 0.767 34 H 0.120 0.880 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.235 0.765 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.184 -13.339 7.546 29.481 hybrid contribution 1.149 0.599 1.166 1.743 sum -24.035 -12.740 8.712 28.564 Atomic orbital electron populations 1.21891 0.92003 1.03612 1.02802 1.21519 0.97166 0.96390 0.90013 0.91480 1.20480 0.79592 0.84375 0.84902 1.43876 1.56287 1.33905 1.08065 1.90697 1.36848 1.25775 1.86299 1.61541 1.09051 1.53433 1.00139 1.22405 0.86316 0.98310 1.01097 1.21044 0.98508 0.99982 0.91268 1.22056 0.95028 1.03833 0.92525 1.23560 1.03181 0.97902 0.97679 1.21701 0.85763 0.92834 1.00858 0.84798 1.45448 1.17787 1.22558 1.50102 1.20285 0.87379 0.80125 0.80115 1.90686 1.62531 1.51671 1.34412 1.23281 0.95545 1.03969 1.04695 1.84771 1.22902 1.20012 1.63705 1.22320 1.00376 1.10589 1.33607 0.89386 1.24715 0.94031 0.97316 0.95263 1.69936 1.10720 1.28262 1.42790 0.86733 0.80011 0.82590 0.82510 1.19232 1.19925 1.15897 1.21150 0.92323 1.00557 0.96999 1.22235 0.99847 0.96168 0.89267 0.90986 0.91685 0.90850 0.77143 0.76665 0.88024 0.95106 0.90346 0.91788 0.88118 0.88485 0.76493 0.88538 0.88389 0.91930 0.91045 0.90410 0.90075 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.73 37.15 0.32 -0.41 16 2 C 0.06 0.47 2.50 -68.87 -0.17 0.30 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.52 4.61 7.08 -10.99 -0.08 4.53 16 5 N -0.86 -4.18 8.77 31.22 0.27 -3.91 16 6 O -0.52 -6.76 14.71 5.56 0.08 -6.68 16 7 N -0.52 -4.90 4.25 -227.85 -0.97 -5.87 16 8 C 0.05 0.50 5.09 -3.74 -0.02 0.48 16 9 C -0.07 -0.70 5.67 -26.48 -0.15 -0.86 16 10 C -0.13 -1.28 2.02 -154.49 -0.31 -1.59 16 11 C -0.18 -1.77 9.93 -26.79 -0.27 -2.04 16 12 C 0.10 1.14 6.10 -68.03 -0.41 0.72 16 13 H 0.13 1.81 7.40 -51.93 -0.38 1.43 16 14 N -0.71 -9.48 5.35 -53.90 -0.29 -9.76 16 15 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 16 O -0.52 -11.21 15.43 5.55 0.09 -11.12 16 17 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 23 Si 0.86 21.83 27.74 -169.99 -4.72 17.12 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 27 C -0.07 -0.61 5.87 -26.48 -0.16 -0.76 16 28 C 0.05 0.44 5.22 -3.73 -0.02 0.42 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 31 H 0.07 0.33 6.14 -51.93 -0.32 0.02 16 32 H 0.40 0.81 8.25 -40.82 -0.34 0.47 16 33 H 0.40 1.69 8.93 -40.82 -0.36 1.32 16 34 H 0.10 1.26 5.21 -51.92 -0.27 0.99 16 35 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.61 6.18 -51.93 -0.32 0.29 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.47 6.85 -40.82 -0.28 4.19 16 41 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 44 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.54 5.72 -51.93 -0.30 0.24 16 47 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -36.41 385.51 -9.04 -45.45 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.19 Total: 4.38 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.91 Total: -3.95 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.21 Total: -45.44 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.41 -9.04 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.624 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds