Wall clock time and date at job start Wed Apr 1 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 C 1.50696 * 109.47678 * 120.00631 * 2 1 3 5 5 N 1.34774 * 119.99947 * 299.99733 * 4 2 1 6 6 O 1.21277 * 120.00138 * 120.00145 * 4 2 1 7 7 N 1.46903 * 109.47107 * 240.00858 * 2 1 3 8 8 C 1.46802 * 111.00465 * 179.97438 * 7 2 1 9 9 C 1.53266 * 109.45075 * 170.79649 * 8 7 2 10 10 C 1.53221 * 108.61346 * 55.59288 * 9 8 7 11 11 C 1.52841 * 117.85941 * 162.98058 * 10 9 8 12 12 C 1.52762 * 117.79237 * 94.00115 * 10 9 8 13 13 H 1.08998 * 117.50396 * 215.31804 * 12 10 9 14 14 N 1.46498 * 117.50428 * 0.34743 * 12 10 9 15 15 C 1.34777 * 119.99828 * 204.60453 * 14 12 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00053 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00174 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47356 * 89.99148 * 23 21 19 25 25 H 1.48497 * 109.47342 * 209.99750 * 23 21 19 26 26 H 1.48505 * 109.46847 * 329.99403 * 23 21 19 27 27 C 1.53212 * 114.74444 * 308.58204 * 10 9 8 28 28 C 1.46810 * 110.99981 * 55.29259 * 7 2 1 29 29 H 1.09000 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47240 * 299.99155 * 1 2 3 31 31 H 1.08992 * 109.47718 * 59.99487 * 1 2 3 32 32 H 0.97007 * 119.99824 * 0.02562 * 5 4 2 33 33 H 0.97001 * 119.99978 * 179.97438 * 5 4 2 34 34 H 1.09008 * 109.47481 * 50.80254 * 8 7 2 35 35 H 1.09000 * 109.47514 * 290.79037 * 8 7 2 36 36 H 1.09001 * 109.61070 * 295.85771 * 9 8 7 37 37 H 1.09000 * 109.61422 * 175.33276 * 9 8 7 38 38 H 1.08993 * 117.50002 * 144.80690 * 11 10 9 39 39 H 1.08998 * 117.54841 * 359.71553 * 11 10 9 40 40 H 0.97001 * 120.00384 * 24.88900 * 14 12 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.97000 * 120.00636 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.61415 * 171.15738 * 27 10 9 45 45 H 1.09000 * 109.61542 * 291.68318 * 27 10 9 46 46 H 1.08994 * 109.47818 * 309.19942 * 28 7 2 47 47 H 1.09002 * 109.47451 * 69.20998 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7069 -0.2502 2.4545 6 8 2.7297 -1.6965 1.1189 7 7 2.0196 -0.6923 -1.1996 8 6 3.4871 -0.7114 -1.2339 9 6 3.9592 -1.6313 -2.3653 10 6 3.3236 -1.1590 -3.6770 11 6 3.9372 -1.6535 -4.9866 12 6 4.1266 -0.1983 -4.5521 13 1 3.5741 0.5661 -5.0985 14 7 5.4546 0.1991 -4.0784 15 6 5.9969 1.3622 -4.4903 16 8 5.3833 2.0822 -5.2492 17 6 7.3657 1.7681 -4.0079 18 16 7.8113 3.3660 -4.7318 19 6 9.4070 3.5905 -4.0191 20 1 9.8118 2.8416 -3.3544 21 6 10.1443 4.7292 -4.3127 22 7 11.3365 4.8967 -3.7806 23 14 9.4446 6.0242 -5.4629 24 1 8.6793 7.0241 -4.6756 25 1 10.5548 6.7023 -6.1788 26 1 8.5431 5.3754 -6.4487 27 6 1.8034 -0.9758 -3.6235 28 6 1.4592 -0.0945 -2.4177 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.1489 0.5383 2.5436 33 1 2.0301 -0.7077 3.2464 34 1 3.8681 -1.0813 -0.2819 35 1 3.8597 0.2982 -1.4070 36 1 3.6502 -2.6556 -2.1570 37 1 5.0451 -1.5834 -2.4468 38 1 3.2599 -1.8463 -5.8185 39 1 4.8010 -2.3149 -4.9205 40 1 5.9455 -0.3768 -3.4715 41 1 7.3580 1.8513 -2.9212 42 1 8.0950 1.0161 -4.3095 43 1 11.8516 5.6927 -3.9854 44 1 1.4606 -0.4935 -4.5389 45 1 1.3213 -1.9475 -3.5162 46 1 0.3763 -0.0188 -2.3204 47 1 1.8815 0.9001 -2.5618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266366166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:57 Heat of formation + Delta-G solvation = -69.951091 kcal Electronic energy + Delta-G solvation = -27694.582438 eV Core-core repulsion = 23810.080738 eV Total energy + Delta-G solvation = -3884.501700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54033 -40.80785 -39.62429 -37.54524 -35.01698 -34.69794 -34.42274 -32.71260 -31.89034 -30.65064 -28.98791 -27.87661 -25.71904 -24.00755 -23.47428 -22.74519 -21.71347 -21.01359 -20.10799 -19.58093 -18.50011 -18.06905 -17.80368 -17.37834 -17.09691 -16.51530 -16.44706 -16.20770 -15.96620 -15.64162 -15.52279 -15.06800 -14.99422 -14.82601 -14.65785 -14.04880 -13.95843 -13.90124 -13.40054 -13.36265 -13.25353 -13.04058 -12.98435 -12.76648 -12.69424 -12.50954 -12.41710 -12.14719 -11.88846 -11.63844 -11.59157 -11.18820 -11.09710 -10.76736 -10.67141 -10.57121 -10.44191 -9.68931 -9.27683 -9.01885 -8.53291 -6.24573 0.95294 1.30034 1.44743 1.46306 1.53282 1.62551 2.12806 2.23899 2.40451 2.68182 2.82421 2.84936 2.98838 3.65250 3.72593 3.74853 3.81737 3.89729 3.96535 4.03995 4.14866 4.18248 4.26302 4.41246 4.45384 4.47183 4.57380 4.59512 4.71988 4.78659 4.86138 4.92984 4.95775 4.99798 5.07926 5.12048 5.26106 5.30030 5.33963 5.48806 5.68868 5.90485 6.01208 6.09537 6.12378 6.38629 6.49000 6.91520 7.12810 7.36462 8.59301 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.002513 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.913143 B =11138.973024 C =12151.463035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.071 0.929 4 C 0.517 3.483 5 N -0.837 5.837 6 O -0.570 6.570 7 N -0.523 5.523 8 C 0.051 3.949 9 C -0.069 4.069 10 C -0.117 4.117 11 C -0.166 4.166 12 C 0.068 3.932 13 H 0.118 0.882 14 N -0.685 5.685 15 C 0.540 3.460 16 O -0.559 6.559 17 C -0.112 4.112 18 S -0.169 6.169 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.236 1.236 27 C -0.073 4.073 28 C 0.053 3.947 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.416 0.584 33 H 0.408 0.592 34 H 0.086 0.914 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.412 0.588 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.042 -14.155 8.940 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.089 0.911 4 C 0.302 3.698 5 N -0.402 5.402 6 O -0.449 6.449 7 N -0.249 5.249 8 C -0.077 4.077 9 C -0.107 4.107 10 C -0.119 4.119 11 C -0.204 4.204 12 C -0.038 4.038 13 H 0.136 0.864 14 N -0.336 5.336 15 C 0.326 3.674 16 O -0.437 6.437 17 C -0.263 4.263 18 S 0.058 5.942 19 C -0.678 4.678 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.160 1.160 27 C -0.110 4.110 28 C -0.074 4.074 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.239 0.761 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.250 0.750 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.121 0.879 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -27.613 -13.932 7.491 31.823 hybrid contribution 1.824 0.638 1.348 2.356 sum -25.789 -13.294 8.839 30.330 Atomic orbital electron populations 1.21898 0.89718 1.03583 1.04514 1.21660 0.98890 0.96024 0.88886 0.91125 1.20764 0.79033 0.83876 0.86131 1.43725 1.55378 1.33964 1.07151 1.90675 1.39143 1.28001 1.87057 1.61565 1.07998 1.54086 1.01205 1.22264 0.87566 0.97302 1.00551 1.21038 0.98770 0.99671 0.91219 1.22068 0.95666 1.01808 0.92316 1.23649 1.03421 0.95389 0.97990 1.21803 0.84996 0.93887 1.03104 0.86395 1.45204 1.18327 1.20987 1.49127 1.19911 0.86557 0.81072 0.79886 1.90672 1.63282 1.53231 1.36507 1.23265 0.97197 1.00760 1.05116 1.84659 1.20690 1.24509 1.64390 1.22462 1.02075 1.10070 1.33188 0.92100 1.25584 0.94353 0.99357 0.96742 1.70015 1.11955 1.29349 1.44221 0.85854 0.79719 0.80064 0.80658 1.18590 1.18262 1.16002 1.21216 0.91201 1.01114 0.97508 1.22290 1.01015 0.95215 0.88907 0.91778 0.89185 0.90013 0.75243 0.76067 0.89641 0.96760 0.90456 0.91483 0.86470 0.87778 0.75043 0.87168 0.86870 0.91313 0.89984 0.89564 0.87876 0.95950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.73 71.98 0.63 -0.45 16 2 C 0.06 0.80 2.50 44.17 0.11 0.91 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 4 C 0.52 8.75 7.08 87.66 0.62 9.37 16 5 N -0.84 -6.95 8.77 -173.54 -1.52 -8.47 16 6 O -0.57 -14.90 14.71 -3.02 -0.04 -14.94 16 7 N -0.52 -9.41 4.25 -874.78 -3.72 -13.13 16 8 C 0.05 1.10 5.09 86.41 0.44 1.54 16 9 C -0.07 -1.32 5.67 30.76 0.17 -1.14 16 10 C -0.12 -2.06 2.02 -52.17 -0.11 -2.16 16 11 C -0.17 -2.78 9.93 30.55 0.30 -2.48 16 12 C 0.07 1.53 6.10 44.93 0.27 1.81 16 13 H 0.12 3.13 7.40 -2.39 -0.02 3.11 16 14 N -0.68 -17.62 5.35 -442.85 -2.37 -19.99 16 15 C 0.54 19.13 7.85 87.66 0.69 19.81 16 16 O -0.56 -24.12 15.43 -3.04 -0.05 -24.17 16 17 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 18 S -0.17 -8.62 18.55 -56.49 -1.05 -9.67 16 19 C -0.53 -31.17 10.04 67.96 0.68 -30.49 16 20 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 21 C 0.05 2.66 5.50 84.86 0.47 3.13 16 22 N -0.92 -56.26 13.97 21.65 0.30 -55.95 16 23 Si 0.92 45.14 27.74 68.60 1.90 47.04 16 24 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 27 C -0.07 -1.07 5.87 30.76 0.18 -0.89 16 28 C 0.05 0.81 5.22 86.41 0.45 1.26 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.24 7.56 -2.38 -0.02 0.22 16 31 H 0.08 0.51 6.14 -2.39 -0.01 0.50 16 32 H 0.42 0.75 8.25 -92.70 -0.76 -0.01 16 33 H 0.41 2.92 8.93 -92.71 -0.83 2.09 16 34 H 0.09 2.17 5.21 -2.38 -0.01 2.16 16 35 H 0.01 0.34 8.12 -2.39 -0.02 0.32 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.20 6.18 -2.39 -0.01 1.18 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.41 8.62 6.85 -92.71 -0.63 7.99 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.11 5.72 -2.39 -0.01 1.10 16 47 H 0.02 0.41 8.12 -2.39 -0.02 0.40 16 Total: -1.00 -80.33 385.51 -2.43 -82.76 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -1.24 Total: 20.20 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.35 Total: -3.69 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -7.31 Total: -97.55 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.09 Total: -39.11 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.67 kcal Total: -80.33 -2.43 -82.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.813 kcal (2) G-P(sol) polarization free energy of solvation -80.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds