Wall clock time and date at job start Wed Apr 1 2020 00:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46378 * 2 1 4 4 C 1.50700 * 109.47389 * 120.00349 * 2 1 3 5 5 N 1.34770 * 119.99806 * 299.99982 * 4 2 1 6 6 O 1.21276 * 119.99817 * 120.00077 * 4 2 1 7 7 N 1.46901 * 109.46899 * 240.00601 * 2 1 3 8 8 C 1.46816 * 110.99971 * 179.97438 * 7 2 1 9 9 C 1.53257 * 109.44785 * 170.79658 * 8 7 2 10 10 C 1.53228 * 108.61701 * 55.59335 * 9 8 7 11 11 C 1.52739 * 117.84092 * 162.99318 * 10 9 8 12 12 C 1.52763 * 117.79123 * 93.99657 * 10 9 8 13 13 H 1.09001 * 117.53508 * 0.36259 * 12 10 9 14 14 N 1.46500 * 117.50150 * 215.28942 * 12 10 9 15 15 C 1.34776 * 119.99472 * 155.06514 * 14 12 10 16 16 O 1.21280 * 120.00458 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99564 * 180.02562 * 15 14 12 18 18 S 1.81008 * 109.46925 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99767 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99642 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00322 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 239.99700 * 23 21 19 26 26 H 1.48500 * 109.47454 * 119.99693 * 23 21 19 27 27 C 1.53212 * 114.73873 * 308.58249 * 10 9 8 28 28 C 1.46809 * 111.00188 * 55.29913 * 7 2 1 29 29 H 1.09007 * 109.46719 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47411 * 299.99218 * 1 2 3 31 31 H 1.08996 * 109.47373 * 59.99903 * 1 2 3 32 32 H 0.97007 * 120.00232 * 0.02562 * 5 4 2 33 33 H 0.96994 * 120.00321 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.47347 * 50.80259 * 8 7 2 35 35 H 1.09001 * 109.47023 * 290.79424 * 8 7 2 36 36 H 1.09004 * 109.61331 * 295.85207 * 9 8 7 37 37 H 1.08997 * 109.61118 * 175.32885 * 9 8 7 38 38 H 1.08996 * 117.50006 * 144.78328 * 11 10 9 39 39 H 1.09004 * 117.50442 * 359.73325 * 11 10 9 40 40 H 0.96999 * 120.00150 * 335.07142 * 14 12 10 41 41 H 1.08998 * 109.47573 * 60.00437 * 17 15 14 42 42 H 1.09000 * 109.46955 * 299.99406 * 17 15 14 43 43 H 0.97004 * 120.00251 * 0.02562 * 22 21 19 44 44 H 1.09004 * 109.60772 * 171.16021 * 27 10 9 45 45 H 1.09000 * 109.61624 * 291.67637 * 27 10 9 46 46 H 1.09000 * 109.47773 * 309.18983 * 28 7 2 47 47 H 1.08996 * 109.47578 * 69.20363 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7069 -0.2501 2.4545 6 8 2.7297 -1.6965 1.1190 7 7 2.0196 -0.6924 -1.1995 8 6 3.4873 -0.7115 -1.2338 9 6 3.9594 -1.6313 -2.3651 10 6 3.3238 -1.1591 -3.6769 11 6 3.9372 -1.6538 -4.9853 12 6 4.1267 -0.1984 -4.5521 13 1 5.1150 0.0975 -4.2001 14 7 3.3841 0.8285 -5.2870 15 6 3.9968 1.9724 -5.6509 16 8 5.1627 2.1520 -5.3696 17 6 3.2326 3.0290 -6.4065 18 16 4.3223 4.4335 -6.7478 19 6 3.2041 5.4849 -7.6132 20 1 2.1850 5.1689 -7.7800 21 6 3.6332 6.7195 -8.0806 22 7 4.8751 7.1050 -7.8768 23 14 2.4477 7.8345 -8.9974 24 1 1.1209 7.1743 -9.0934 25 1 2.9697 8.0961 -10.3628 26 1 2.3100 9.1193 -8.2656 27 6 1.8036 -0.9760 -3.6234 28 6 1.4594 -0.0945 -2.4177 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1488 0.5384 2.5435 33 1 2.0299 -0.7075 3.2464 34 1 3.8682 -1.0812 -0.2818 35 1 3.8598 0.2982 -1.4069 36 1 3.6504 -2.6557 -2.1567 37 1 5.0452 -1.5833 -2.4466 38 1 3.2600 -1.8473 -5.8172 39 1 4.8007 -2.3156 -4.9179 40 1 2.4514 0.6851 -5.5117 41 1 2.3856 3.3631 -5.8074 42 1 2.8712 2.6132 -7.3470 43 1 5.4907 6.5262 -7.4004 44 1 1.4608 -0.4938 -4.5389 45 1 1.3215 -1.9477 -3.5161 46 1 0.3764 -0.0189 -2.3205 47 1 1.8816 0.9000 -2.5617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266366167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:02 Heat of formation + Delta-G solvation = -46.586016 kcal Electronic energy + Delta-G solvation = -27630.415929 eV Core-core repulsion = 23746.927415 eV Total energy + Delta-G solvation = -3883.488514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74775 -39.81946 -38.52494 -36.70142 -34.37620 -33.34419 -32.55157 -31.84765 -31.21592 -29.32001 -28.13765 -25.18564 -24.88009 -23.16561 -22.45787 -22.00357 -20.46559 -20.36526 -18.98982 -18.31978 -17.94265 -17.22438 -16.66502 -16.38850 -15.74766 -15.55421 -15.04487 -14.96296 -14.80045 -14.67952 -14.15028 -13.95652 -13.89116 -13.58113 -13.39560 -12.95091 -12.78190 -12.71739 -12.40560 -12.36785 -12.27508 -12.18900 -11.87066 -11.79830 -11.58945 -11.38713 -10.92320 -10.84201 -10.69677 -10.22866 -10.10566 -10.08003 -9.71386 -9.61358 -9.51192 -9.03555 -8.62363 -8.53734 -8.24492 -6.69633 -6.64662 -4.02639 2.26011 2.83933 2.87636 2.95119 3.32436 3.38513 3.46900 3.53295 3.59609 3.75514 4.22151 4.35972 4.48687 4.51701 4.58604 4.66198 4.68935 4.74585 4.95381 5.03177 5.05323 5.14900 5.20076 5.20763 5.35366 5.37608 5.40314 5.43825 5.53412 5.63080 5.70886 5.72478 5.73841 5.79470 5.89623 5.93096 5.97642 6.06538 6.10207 6.38858 6.59139 6.65453 6.83949 6.96505 7.59259 7.89598 7.90675 8.47796 8.48542 9.24661 10.79403 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002333 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.823094 B =12001.165536 C =12945.760679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 H 0.068 0.932 4 C 0.523 3.477 5 N -0.857 5.857 6 O -0.522 6.522 7 N -0.516 5.516 8 C 0.045 3.955 9 C -0.069 4.069 10 C -0.132 4.132 11 C -0.184 4.184 12 C 0.095 3.905 13 H 0.134 0.866 14 N -0.707 5.707 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.130 4.130 18 S -0.115 6.115 19 C -0.607 4.607 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.885 5.885 23 Si 1.090 2.910 24 H -0.288 1.288 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.073 4.073 28 C 0.053 3.947 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.402 0.598 34 H 0.102 0.898 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.278 0.722 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.577 -18.344 17.663 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 H 0.085 0.915 4 C 0.307 3.693 5 N -0.421 5.421 6 O -0.397 6.397 7 N -0.241 5.241 8 C -0.082 4.082 9 C -0.107 4.107 10 C -0.134 4.134 11 C -0.223 4.223 12 C -0.012 4.012 13 H 0.152 0.848 14 N -0.360 5.360 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.281 4.281 18 S 0.111 5.889 19 C -0.755 4.755 20 H 0.085 0.915 21 C -0.176 4.176 22 N -0.519 5.519 23 Si 0.917 3.083 24 H -0.214 1.214 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.111 4.111 28 C -0.074 4.074 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.229 0.771 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.233 0.767 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.442 -17.649 17.113 26.334 hybrid contribution -1.766 -0.683 0.550 1.972 sum -11.208 -18.332 17.663 27.815 Atomic orbital electron populations 1.21897 0.91959 1.03614 1.02881 1.21523 0.97216 0.96371 0.89984 0.91485 1.20484 0.79559 0.84351 0.84902 1.43875 1.56296 1.33926 1.08039 1.90692 1.36909 1.25768 1.86313 1.61549 1.09061 1.53401 1.00109 1.22422 0.86293 0.98312 1.01193 1.21108 0.98939 0.99749 0.90920 1.22042 0.95025 1.03746 0.92597 1.23543 1.03483 0.97757 0.97515 1.21714 0.97493 0.84207 0.97779 0.84790 1.45447 1.14505 1.17489 1.58519 1.20294 0.87460 0.81688 0.78544 1.90697 1.16430 1.78151 1.53696 1.23311 1.03419 0.99188 1.02229 1.84845 1.17611 1.12477 1.73957 1.23758 0.99671 1.06945 1.45155 0.91535 1.26064 0.99107 0.96063 0.96347 1.70737 1.04470 1.39425 1.37284 0.83246 0.73768 0.75101 0.76232 1.21405 1.20862 1.20880 1.21087 0.92743 1.00574 0.96727 1.22218 0.99903 0.96137 0.89192 0.90984 0.91659 0.90803 0.77105 0.76707 0.88050 0.95237 0.90361 0.91250 0.88544 0.88068 0.76684 0.89010 0.88918 0.90911 0.91629 0.90358 0.90034 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.73 37.16 0.32 -0.47 16 2 C 0.06 0.48 2.50 -68.86 -0.17 0.31 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.52 4.55 7.08 -10.99 -0.08 4.47 16 5 N -0.86 -4.01 8.77 31.22 0.27 -3.74 16 6 O -0.52 -6.64 14.71 5.56 0.08 -6.56 16 7 N -0.52 -5.00 4.25 -227.84 -0.97 -5.97 16 8 C 0.04 0.49 5.09 -3.74 -0.02 0.47 16 9 C -0.07 -0.71 5.87 -26.48 -0.16 -0.87 16 10 C -0.13 -1.32 2.02 -154.54 -0.31 -1.64 16 11 C -0.18 -1.84 9.93 -26.85 -0.27 -2.10 16 12 C 0.09 1.18 6.10 -68.03 -0.42 0.77 16 13 H 0.13 1.96 7.40 -51.93 -0.38 1.57 16 14 N -0.71 -9.57 5.35 -53.90 -0.29 -9.86 16 15 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 16 O -0.52 -11.68 15.43 5.56 0.09 -11.60 16 17 C -0.13 -2.62 6.16 36.01 0.22 -2.39 16 18 S -0.12 -3.10 19.60 -107.50 -2.11 -5.20 16 19 C -0.61 -17.42 9.50 30.94 0.29 -17.13 16 20 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 21 C 0.03 1.01 5.49 -17.43 -0.10 0.91 16 22 N -0.88 -27.50 13.67 55.49 0.76 -26.74 16 23 Si 1.09 24.92 29.92 -169.99 -5.09 19.83 16 24 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 C -0.07 -0.64 5.67 -26.48 -0.15 -0.79 16 28 C 0.05 0.47 5.22 -3.73 -0.02 0.45 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 31 H 0.07 0.38 6.14 -51.93 -0.32 0.06 16 32 H 0.40 0.78 8.25 -40.82 -0.34 0.44 16 33 H 0.40 1.56 8.93 -40.82 -0.36 1.20 16 34 H 0.10 1.24 5.21 -51.93 -0.27 0.97 16 35 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.40 4.29 6.85 -40.82 -0.28 4.01 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.28 8.84 7.13 -40.82 -0.29 8.55 16 44 H 0.07 0.52 6.18 -51.93 -0.32 0.20 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.59 5.72 -51.93 -0.30 0.30 16 47 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -37.21 386.84 -9.46 -46.66 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.11 Total: 5.52 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.93 Total: -8.17 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.23 Total: -46.31 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.21 -9.46 -46.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.076 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds