Wall clock time and date at job start Wed Apr 1 2020 00:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46378 * 2 1 4 4 C 1.50700 * 109.47389 * 120.00349 * 2 1 3 5 5 N 1.34770 * 119.99806 * 299.99982 * 4 2 1 6 6 O 1.21276 * 119.99817 * 120.00077 * 4 2 1 7 7 N 1.46901 * 109.46899 * 240.00601 * 2 1 3 8 8 C 1.46816 * 110.99971 * 179.97438 * 7 2 1 9 9 C 1.53257 * 109.44785 * 170.79658 * 8 7 2 10 10 C 1.53228 * 108.61701 * 55.59335 * 9 8 7 11 11 C 1.52739 * 117.84092 * 162.99318 * 10 9 8 12 12 C 1.52763 * 117.79123 * 93.99657 * 10 9 8 13 13 H 1.09001 * 117.53508 * 0.36259 * 12 10 9 14 14 N 1.46500 * 117.50150 * 215.28942 * 12 10 9 15 15 C 1.34776 * 119.99472 * 155.06514 * 14 12 10 16 16 O 1.21280 * 120.00458 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99564 * 180.02562 * 15 14 12 18 18 S 1.81008 * 109.46925 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99767 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99642 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00322 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 239.99700 * 23 21 19 26 26 H 1.48500 * 109.47454 * 119.99693 * 23 21 19 27 27 C 1.53212 * 114.73873 * 308.58249 * 10 9 8 28 28 C 1.46809 * 111.00188 * 55.29913 * 7 2 1 29 29 H 1.09007 * 109.46719 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47411 * 299.99218 * 1 2 3 31 31 H 1.08996 * 109.47373 * 59.99903 * 1 2 3 32 32 H 0.97007 * 120.00232 * 0.02562 * 5 4 2 33 33 H 0.96994 * 120.00321 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.47347 * 50.80259 * 8 7 2 35 35 H 1.09001 * 109.47023 * 290.79424 * 8 7 2 36 36 H 1.09004 * 109.61331 * 295.85207 * 9 8 7 37 37 H 1.08997 * 109.61118 * 175.32885 * 9 8 7 38 38 H 1.08996 * 117.50006 * 144.78328 * 11 10 9 39 39 H 1.09004 * 117.50442 * 359.73325 * 11 10 9 40 40 H 0.96999 * 120.00150 * 335.07142 * 14 12 10 41 41 H 1.08998 * 109.47573 * 60.00437 * 17 15 14 42 42 H 1.09000 * 109.46955 * 299.99406 * 17 15 14 43 43 H 0.97004 * 120.00251 * 0.02562 * 22 21 19 44 44 H 1.09004 * 109.60772 * 171.16021 * 27 10 9 45 45 H 1.09000 * 109.61624 * 291.67637 * 27 10 9 46 46 H 1.09000 * 109.47773 * 309.18983 * 28 7 2 47 47 H 1.08996 * 109.47578 * 69.20363 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7069 -0.2501 2.4545 6 8 2.7297 -1.6965 1.1190 7 7 2.0196 -0.6924 -1.1995 8 6 3.4873 -0.7115 -1.2338 9 6 3.9594 -1.6313 -2.3651 10 6 3.3238 -1.1591 -3.6769 11 6 3.9372 -1.6538 -4.9853 12 6 4.1267 -0.1984 -4.5521 13 1 5.1150 0.0975 -4.2001 14 7 3.3841 0.8285 -5.2870 15 6 3.9968 1.9724 -5.6509 16 8 5.1627 2.1520 -5.3696 17 6 3.2326 3.0290 -6.4065 18 16 4.3223 4.4335 -6.7478 19 6 3.2041 5.4849 -7.6132 20 1 2.1850 5.1689 -7.7800 21 6 3.6332 6.7195 -8.0806 22 7 4.8751 7.1050 -7.8768 23 14 2.4477 7.8345 -8.9974 24 1 1.1209 7.1743 -9.0934 25 1 2.9697 8.0961 -10.3628 26 1 2.3100 9.1193 -8.2656 27 6 1.8036 -0.9760 -3.6234 28 6 1.4594 -0.0945 -2.4177 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1488 0.5384 2.5435 33 1 2.0299 -0.7075 3.2464 34 1 3.8682 -1.0812 -0.2818 35 1 3.8598 0.2982 -1.4069 36 1 3.6504 -2.6557 -2.1567 37 1 5.0452 -1.5833 -2.4466 38 1 3.2600 -1.8473 -5.8172 39 1 4.8007 -2.3156 -4.9179 40 1 2.4514 0.6851 -5.5117 41 1 2.3856 3.3631 -5.8074 42 1 2.8712 2.6132 -7.3470 43 1 5.4907 6.5262 -7.4004 44 1 1.4608 -0.4938 -4.5389 45 1 1.3215 -1.9477 -3.5161 46 1 0.3764 -0.0189 -2.3205 47 1 1.8816 0.9000 -2.5617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266366167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:00 Heat of formation + Delta-G solvation = -76.372297 kcal Electronic energy + Delta-G solvation = -27631.707559 eV Core-core repulsion = 23746.927415 eV Total energy + Delta-G solvation = -3884.780144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.57449 -40.84544 -39.66330 -37.57279 -35.07598 -34.75656 -34.46112 -32.65210 -31.98225 -30.75340 -28.94702 -27.09456 -25.81120 -23.97794 -23.48076 -22.79687 -21.76512 -21.04499 -20.48793 -19.77787 -18.52078 -18.12210 -17.92832 -17.43180 -16.67954 -16.51064 -16.40862 -16.23553 -15.74841 -15.69183 -15.56357 -15.08490 -15.04405 -14.65853 -14.49526 -14.27037 -13.96487 -13.87810 -13.77423 -13.46480 -13.32147 -12.94078 -12.87802 -12.76448 -12.49448 -12.47510 -12.18282 -11.92536 -11.71398 -11.58619 -11.55382 -11.16619 -11.12096 -10.82694 -10.68667 -10.45486 -10.32831 -9.72684 -9.31144 -8.93118 -8.87963 -6.28446 1.16207 1.43046 1.51687 1.60674 1.62100 1.78268 2.07610 2.33569 2.38100 2.78673 2.96051 3.02134 3.12043 3.60630 3.68463 3.73846 3.80060 3.87365 3.93764 4.01602 4.12558 4.15121 4.22696 4.34475 4.41790 4.44340 4.52247 4.57056 4.70754 4.75431 4.81839 4.87804 4.92175 4.95803 5.05071 5.09251 5.23238 5.25981 5.31288 5.44527 5.64744 5.88902 5.98749 6.08672 6.14287 6.37860 6.47144 7.05717 7.12150 7.34863 8.50400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002333 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.823094 B =12001.165536 C =12945.760679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.070 0.930 4 C 0.518 3.482 5 N -0.837 5.837 6 O -0.569 6.569 7 N -0.521 5.521 8 C 0.050 3.950 9 C -0.069 4.069 10 C -0.114 4.114 11 C -0.164 4.164 12 C 0.065 3.935 13 H 0.106 0.894 14 N -0.679 5.679 15 C 0.536 3.464 16 O -0.566 6.566 17 C -0.107 4.107 18 S -0.197 6.197 19 C -0.611 4.611 20 H 0.076 0.924 21 C -0.020 4.020 22 N -0.915 5.915 23 Si 1.142 2.858 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.074 4.074 28 C 0.053 3.947 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.408 0.592 34 H 0.088 0.912 35 H 0.010 0.990 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.415 0.585 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.261 0.739 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 -19.307 17.591 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.088 0.912 4 C 0.303 3.697 5 N -0.401 5.401 6 O -0.448 6.448 7 N -0.247 5.247 8 C -0.077 4.077 9 C -0.107 4.107 10 C -0.116 4.116 11 C -0.202 4.202 12 C -0.041 4.041 13 H 0.124 0.876 14 N -0.331 5.331 15 C 0.322 3.678 16 O -0.444 6.444 17 C -0.259 4.259 18 S 0.030 5.970 19 C -0.758 4.758 20 H 0.094 0.906 21 C -0.223 4.223 22 N -0.550 5.550 23 Si 0.960 3.040 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.111 4.111 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.028 0.972 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.254 0.746 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.122 0.878 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -13.091 -18.646 17.091 28.481 hybrid contribution -0.676 -0.519 0.721 1.116 sum -13.767 -19.165 17.812 29.565 Atomic orbital electron populations 1.21903 0.89732 1.03625 1.04498 1.21665 0.98884 0.96004 0.88960 0.91237 1.20717 0.79035 0.83855 0.86093 1.43711 1.55362 1.33963 1.07110 1.90672 1.39141 1.27946 1.87048 1.61577 1.07904 1.53997 1.01181 1.22278 0.87579 0.97164 1.00725 1.21103 0.98947 0.99634 0.91014 1.22054 0.95793 1.01389 0.92352 1.23638 1.03854 0.94997 0.97755 1.21718 0.97104 0.85090 1.00235 0.87591 1.45107 1.15100 1.15960 1.56956 1.20044 0.86707 0.82618 0.78420 1.90688 1.18477 1.79271 1.55937 1.23203 1.02182 0.96625 1.03873 1.85116 1.21136 1.16390 1.74341 1.24071 1.00000 1.07204 1.44556 0.90567 1.27853 0.99778 0.98101 0.96616 1.70861 1.05599 1.39584 1.38952 0.82645 0.72623 0.73598 0.75129 1.18551 1.20103 1.20007 1.21170 0.91349 1.01301 0.97300 1.22285 1.01066 0.95125 0.88969 0.91666 0.89156 0.90151 0.75241 0.76009 0.89421 0.97161 0.90127 0.91522 0.86833 0.87234 0.74623 0.86862 0.86876 0.92836 0.90199 0.89300 0.87793 0.96042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.73 71.98 0.63 -0.54 16 2 C 0.06 0.82 2.50 44.17 0.11 0.93 16 3 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.52 8.67 7.08 87.66 0.62 9.29 16 5 N -0.84 -6.63 8.77 -173.54 -1.52 -8.15 16 6 O -0.57 -14.66 14.71 -3.02 -0.04 -14.70 16 7 N -0.52 -9.60 4.25 -874.76 -3.72 -13.33 16 8 C 0.05 1.13 5.09 86.41 0.44 1.57 16 9 C -0.07 -1.40 5.87 30.76 0.18 -1.22 16 10 C -0.11 -2.11 2.02 -52.20 -0.11 -2.22 16 11 C -0.16 -2.91 9.93 30.52 0.30 -2.60 16 12 C 0.06 1.57 6.10 44.92 0.27 1.84 16 13 H 0.11 3.24 7.40 -2.39 -0.02 3.22 16 14 N -0.68 -17.38 5.35 -442.85 -2.37 -19.75 16 15 C 0.54 19.79 7.85 87.66 0.69 20.47 16 16 O -0.57 -26.48 15.43 -3.03 -0.05 -26.53 16 17 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 18 S -0.20 -10.80 19.60 -56.49 -1.11 -11.91 16 19 C -0.61 -34.92 9.50 67.95 0.65 -34.28 16 20 H 0.08 4.08 7.80 -2.91 -0.02 4.05 16 21 C -0.02 -1.18 5.49 84.86 0.47 -0.72 16 22 N -0.91 -58.06 13.67 21.65 0.30 -57.77 16 23 Si 1.14 49.00 29.92 68.60 2.05 51.05 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 C -0.07 -1.08 5.67 30.76 0.17 -0.91 16 28 C 0.05 0.83 5.22 86.41 0.45 1.28 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.29 7.56 -2.39 -0.02 0.27 16 31 H 0.08 0.58 6.14 -2.39 -0.01 0.57 16 32 H 0.42 0.68 8.25 -92.70 -0.76 -0.09 16 33 H 0.41 2.65 8.93 -92.71 -0.83 1.83 16 34 H 0.09 2.25 5.21 -2.39 -0.01 2.24 16 35 H 0.01 0.26 8.12 -2.39 -0.02 0.24 16 36 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.42 7.71 6.85 -92.71 -0.63 7.07 16 41 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 42 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.26 17.25 7.13 -92.70 -0.66 16.59 16 44 H 0.08 0.95 6.18 -2.39 -0.01 0.94 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.10 1.18 5.72 -2.39 -0.01 1.17 16 47 H 0.02 0.42 8.12 -2.39 -0.02 0.40 16 Total: -1.00 -84.73 386.84 -2.24 -86.97 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -1.09 Total: 24.96 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.32 Total: -10.86 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -7.31 Total: -98.99 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.09 Total: -41.23 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.11 Total: -11.91 kcal Total: -84.73 -2.24 -86.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -84.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds