Wall clock time and date at job start Wed Apr 1 2020 00:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34767 * 120.00271 * 2 1 4 4 O 1.21288 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00276 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46515 * 32.87790 * 5 3 2 7 7 C 1.52998 * 109.47226 * 272.87805 * 5 3 2 8 8 N 1.46897 * 109.47037 * 152.87365 * 5 3 2 9 9 C 1.46962 * 111.00435 * 296.50108 * 8 5 3 10 10 C 1.53765 * 108.96323 * 180.38608 * 9 8 5 11 11 H 1.08999 * 112.82462 * 187.64755 * 10 9 8 12 12 C 1.54698 * 107.65279 * 312.23752 * 10 9 8 13 13 C 1.54343 * 104.63131 * 87.37746 * 12 10 9 14 14 C 1.54695 * 104.63435 * 0.02562 * 13 12 10 15 15 H 1.09004 * 112.39201 * 147.76855 * 14 13 12 16 16 C 1.46970 * 110.99819 * 171.75636 * 8 5 3 17 17 N 1.48439 * 104.03612 * 25.89967 * 14 13 12 18 18 C 1.34778 * 128.45597 * 137.18231 * 17 14 13 19 19 O 1.21274 * 119.99504 * 0.02562 * 18 17 14 20 20 C 1.50701 * 119.99852 * 180.02562 * 18 17 14 21 21 S 1.81000 * 109.46534 * 180.02562 * 20 18 17 22 22 C 1.76204 * 99.99920 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99908 * 0.02562 * 22 21 20 24 24 C 1.38792 * 120.00044 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00433 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99958 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47039 * 60.00460 * 26 24 22 28 28 H 1.48499 * 109.47189 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47218 * 300.00197 * 26 24 22 30 30 H 1.08990 * 109.47408 * 300.00628 * 1 2 3 31 31 H 1.09007 * 109.46571 * 60.00337 * 1 2 3 32 32 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 33 33 H 0.97008 * 119.99677 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.46948 * 59.99778 * 7 5 3 35 35 H 1.09003 * 109.46935 * 179.97438 * 7 5 3 36 36 H 1.09000 * 109.46878 * 299.99258 * 7 5 3 37 37 H 1.09007 * 109.54884 * 60.54759 * 9 8 5 38 38 H 1.08994 * 109.64341 * 300.29044 * 9 8 5 39 39 H 1.08998 * 110.40239 * 206.16657 * 12 10 9 40 40 H 1.08994 * 110.40198 * 328.47058 * 12 10 9 41 41 H 1.09008 * 110.40300 * 241.21666 * 13 12 10 42 42 H 1.09001 * 110.40768 * 118.79464 * 13 12 10 43 43 H 1.08995 * 109.55683 * 59.76606 * 16 8 5 44 44 H 1.09007 * 109.55325 * 299.45553 * 16 8 5 45 45 H 1.08997 * 109.47259 * 299.99901 * 20 18 17 46 46 H 1.08994 * 109.47030 * 60.00401 * 20 18 17 47 47 H 0.97000 * 120.00715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1671 0.0006 6 1 4.0094 0.3039 -0.5570 7 6 4.1554 1.0950 1.4415 8 7 4.1358 2.3996 -0.6310 9 6 3.7348 2.4631 -2.0434 10 6 4.2785 3.7628 -2.6593 11 1 3.9073 3.9400 -3.6687 12 6 3.9332 4.9203 -1.6927 13 6 5.1119 4.9617 -0.6972 14 6 6.0545 3.8257 -1.1600 15 1 7.1035 4.0532 -0.9700 16 6 5.5916 2.5284 -0.4754 17 7 5.7601 3.6810 -2.6077 18 6 6.6265 3.5155 -3.6268 19 8 7.8184 3.4688 -3.4077 20 6 6.1141 3.3883 -5.0383 21 16 7.5107 3.1777 -6.1703 22 6 6.6477 3.0575 -7.7018 23 1 5.5696 3.1203 -7.7205 24 6 7.3533 2.8831 -8.8841 25 7 8.6672 2.8070 -8.8614 26 14 6.4384 2.7564 -10.5079 27 1 5.6592 3.9998 -10.7353 28 1 7.4138 2.5739 -11.6127 29 1 5.5150 1.5941 -10.4664 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.9501 -0.8401 0.0004 34 1 3.7919 0.1805 1.9100 35 1 5.2455 1.0945 1.4418 36 1 3.7920 1.9582 1.9989 37 1 2.6471 2.4528 -2.1145 38 1 4.1436 1.6065 -2.5792 39 1 3.8624 5.8618 -2.2373 40 1 2.9993 4.7132 -1.1703 41 1 4.7595 4.7740 0.3171 42 1 5.6216 5.9237 -0.7514 43 1 6.0851 1.6747 -0.9397 44 1 5.8434 2.5652 0.5846 45 1 5.4556 2.5227 -5.1092 46 1 5.5611 4.2885 -5.3065 47 1 9.1605 2.6855 -9.6878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266479012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:09 Heat of formation + Delta-G solvation = -43.508720 kcal Electronic energy + Delta-G solvation = -28532.647476 eV Core-core repulsion = 24649.292403 eV Total energy + Delta-G solvation = -3883.355073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15661 -39.82047 -37.96831 -35.78505 -34.87375 -32.42937 -31.92302 -31.57316 -30.85637 -28.78263 -27.47920 -25.97987 -25.48050 -24.58121 -23.10358 -21.46882 -20.57212 -20.44049 -18.57698 -17.83276 -17.70468 -17.03243 -16.32854 -15.85094 -15.46274 -15.24571 -14.99975 -14.89254 -14.80322 -14.40883 -14.17646 -13.87463 -13.63857 -13.42190 -13.25129 -12.90112 -12.85601 -12.67211 -12.64046 -12.50784 -12.29815 -12.08709 -11.91273 -11.63134 -11.22361 -11.13347 -11.03887 -11.01235 -10.85777 -10.75387 -10.39747 -9.99392 -9.81868 -9.48886 -9.35586 -9.05932 -8.64422 -8.45293 -8.23578 -6.50088 -6.21361 -3.92130 2.33143 2.73417 2.89889 3.07196 3.23412 3.25607 3.29031 3.57296 3.61098 4.20460 4.30300 4.50257 4.57727 4.69573 4.71646 4.80012 4.84326 4.85584 5.04257 5.11931 5.12644 5.13665 5.14712 5.23178 5.36485 5.42069 5.43530 5.51546 5.53152 5.59420 5.68201 5.74892 5.78914 5.82434 5.89908 5.99909 6.01106 6.12901 6.14851 6.23008 6.50783 6.62503 6.77788 7.12677 7.59283 7.80911 7.93332 8.35160 8.59039 9.23673 10.86018 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.002812 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.182025 B = 9954.164486 C =11005.411466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.740 5.740 3 C 0.517 3.483 4 O -0.514 6.514 5 C 0.066 3.934 6 H 0.059 0.941 7 C -0.143 4.143 8 N -0.508 5.508 9 C 0.045 3.955 10 C 0.131 3.869 11 H 0.105 0.895 12 C -0.115 4.115 13 C -0.113 4.113 14 C 0.134 3.866 15 H 0.107 0.893 16 C 0.046 3.954 17 N -0.628 5.628 18 C 0.555 3.445 19 O -0.518 6.518 20 C -0.146 4.146 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.287 -5.003 22.384 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.393 5.393 3 C 0.302 3.698 4 O -0.388 6.388 5 C -0.046 4.046 6 H 0.077 0.923 7 C -0.201 4.201 8 N -0.234 5.234 9 C -0.084 4.084 10 C 0.027 3.973 11 H 0.123 0.877 12 C -0.154 4.154 13 C -0.152 4.152 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.083 4.083 17 N -0.365 5.365 18 C 0.344 3.656 19 O -0.392 6.392 20 C -0.297 4.297 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.921 -3.936 22.718 26.933 hybrid contribution -1.497 -1.327 -1.826 2.708 sum -15.418 -5.263 20.893 26.494 Atomic orbital electron populations 1.21520 0.79472 1.02179 1.02376 1.45872 1.07845 1.08790 1.76829 1.20516 0.89665 0.83669 0.75936 1.90713 1.69860 1.31000 1.47209 1.21563 0.91919 0.93107 0.98014 0.92281 1.21840 1.02115 1.02952 0.93178 1.61747 1.12501 1.34111 1.15024 1.22674 1.01058 0.97371 0.87267 1.22402 0.80255 0.94806 0.99847 0.87704 1.22422 0.99594 0.96883 0.96470 1.22401 0.95556 0.97274 0.99962 1.22343 1.00188 0.94227 0.80266 0.87510 1.22734 0.86614 0.97768 1.01169 1.49472 1.06781 1.73820 1.06411 1.19979 0.85379 0.74907 0.85323 1.90700 1.15207 1.48990 1.84283 1.23498 1.06526 1.04616 0.95033 1.85382 1.05063 1.94993 0.97875 1.22819 0.95111 1.57990 0.92430 0.91018 1.24985 0.94986 0.94568 0.98994 1.70007 1.05748 1.46225 1.28342 0.86228 0.79178 0.78813 0.81310 1.19898 1.20798 1.19961 0.92250 0.92167 0.90724 0.76600 0.91748 0.90862 0.90769 0.89340 0.94323 0.91877 0.89231 0.89847 0.91885 0.94029 0.89097 0.89586 0.89327 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.74 -4.81 5.71 -67.07 -0.38 -5.19 16 3 C 0.52 4.90 6.06 -10.99 -0.07 4.83 16 4 O -0.51 -6.79 15.77 5.55 0.09 -6.70 16 5 C 0.07 0.55 2.48 -68.87 -0.17 0.38 16 6 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 7 C -0.14 -0.92 8.66 37.16 0.32 -0.59 16 8 N -0.51 -5.21 3.19 -226.90 -0.72 -5.94 16 9 C 0.04 0.52 4.72 -3.39 -0.02 0.50 16 10 C 0.13 1.64 4.07 -65.55 -0.27 1.38 16 11 H 0.11 1.29 7.46 -51.93 -0.39 0.90 16 12 C -0.12 -1.28 6.14 -25.13 -0.15 -1.44 16 13 C -0.11 -1.22 6.14 -25.14 -0.15 -1.37 16 14 C 0.13 1.67 4.20 -65.54 -0.28 1.40 16 15 H 0.11 1.43 7.95 -51.93 -0.41 1.01 16 16 C 0.05 0.48 4.42 -3.36 -0.01 0.46 16 17 N -0.63 -9.54 2.78 -152.74 -0.42 -9.96 16 18 C 0.56 11.03 7.95 -10.98 -0.09 10.94 16 19 O -0.52 -12.19 16.20 5.56 0.09 -12.10 16 20 C -0.15 -3.09 5.17 36.01 0.19 -2.90 16 21 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 22 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 23 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 24 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 25 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 26 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.40 1.53 8.83 -40.82 -0.36 1.17 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.43 6.33 -51.93 -0.33 0.10 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.04 6.67 -51.92 -0.35 0.70 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.02 7.81 -51.93 -0.41 0.62 16 41 H 0.08 0.82 7.81 -51.92 -0.41 0.41 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.76 6.24 -51.92 -0.32 0.43 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.76 8.08 -51.92 -0.42 1.34 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -36.54 386.88 -9.47 -46.01 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.58 Total: -0.63 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 0.14 Total: 1.66 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.80 Total: -46.71 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.54 -9.47 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266479012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.504 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds