Wall clock time and date at job start Wed Apr 1 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34767 * 120.00271 * 2 1 4 4 O 1.21288 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00276 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46515 * 32.87790 * 5 3 2 7 7 C 1.52998 * 109.47226 * 272.87805 * 5 3 2 8 8 N 1.46897 * 109.47037 * 152.87365 * 5 3 2 9 9 C 1.46962 * 111.00435 * 296.50108 * 8 5 3 10 10 C 1.53765 * 108.96323 * 180.38608 * 9 8 5 11 11 H 1.08999 * 112.82462 * 187.64755 * 10 9 8 12 12 C 1.54698 * 107.65279 * 312.23752 * 10 9 8 13 13 C 1.54343 * 104.63131 * 87.37746 * 12 10 9 14 14 C 1.54695 * 104.63435 * 0.02562 * 13 12 10 15 15 H 1.09004 * 112.39201 * 147.76855 * 14 13 12 16 16 C 1.46970 * 110.99819 * 171.75636 * 8 5 3 17 17 N 1.48439 * 104.03612 * 25.89967 * 14 13 12 18 18 C 1.34778 * 128.45597 * 137.18231 * 17 14 13 19 19 O 1.21274 * 119.99504 * 0.02562 * 18 17 14 20 20 C 1.50701 * 119.99852 * 180.02562 * 18 17 14 21 21 S 1.81000 * 109.46534 * 180.02562 * 20 18 17 22 22 C 1.76204 * 99.99920 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99908 * 0.02562 * 22 21 20 24 24 C 1.38792 * 120.00044 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00433 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99958 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47039 * 60.00460 * 26 24 22 28 28 H 1.48499 * 109.47189 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47218 * 300.00197 * 26 24 22 30 30 H 1.08990 * 109.47408 * 300.00628 * 1 2 3 31 31 H 1.09007 * 109.46571 * 60.00337 * 1 2 3 32 32 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 33 33 H 0.97008 * 119.99677 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.46948 * 59.99778 * 7 5 3 35 35 H 1.09003 * 109.46935 * 179.97438 * 7 5 3 36 36 H 1.09000 * 109.46878 * 299.99258 * 7 5 3 37 37 H 1.09007 * 109.54884 * 60.54759 * 9 8 5 38 38 H 1.08994 * 109.64341 * 300.29044 * 9 8 5 39 39 H 1.08998 * 110.40239 * 206.16657 * 12 10 9 40 40 H 1.08994 * 110.40198 * 328.47058 * 12 10 9 41 41 H 1.09008 * 110.40300 * 241.21666 * 13 12 10 42 42 H 1.09001 * 110.40768 * 118.79464 * 13 12 10 43 43 H 1.08995 * 109.55683 * 59.76606 * 16 8 5 44 44 H 1.09007 * 109.55325 * 299.45553 * 16 8 5 45 45 H 1.08997 * 109.47259 * 299.99901 * 20 18 17 46 46 H 1.08994 * 109.47030 * 60.00401 * 20 18 17 47 47 H 0.97000 * 120.00715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1671 0.0006 6 1 4.0094 0.3039 -0.5570 7 6 4.1554 1.0950 1.4415 8 7 4.1358 2.3996 -0.6310 9 6 3.7348 2.4631 -2.0434 10 6 4.2785 3.7628 -2.6593 11 1 3.9073 3.9400 -3.6687 12 6 3.9332 4.9203 -1.6927 13 6 5.1119 4.9617 -0.6972 14 6 6.0545 3.8257 -1.1600 15 1 7.1035 4.0532 -0.9700 16 6 5.5916 2.5284 -0.4754 17 7 5.7601 3.6810 -2.6077 18 6 6.6265 3.5155 -3.6268 19 8 7.8184 3.4688 -3.4077 20 6 6.1141 3.3883 -5.0383 21 16 7.5107 3.1777 -6.1703 22 6 6.6477 3.0575 -7.7018 23 1 5.5696 3.1203 -7.7205 24 6 7.3533 2.8831 -8.8841 25 7 8.6672 2.8070 -8.8614 26 14 6.4384 2.7564 -10.5079 27 1 5.6592 3.9998 -10.7353 28 1 7.4138 2.5739 -11.6127 29 1 5.5150 1.5941 -10.4664 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.9501 -0.8401 0.0004 34 1 3.7919 0.1805 1.9100 35 1 5.2455 1.0945 1.4418 36 1 3.7920 1.9582 1.9989 37 1 2.6471 2.4528 -2.1145 38 1 4.1436 1.6065 -2.5792 39 1 3.8624 5.8618 -2.2373 40 1 2.9993 4.7132 -1.1703 41 1 4.7595 4.7740 0.3171 42 1 5.6216 5.9237 -0.7514 43 1 6.0851 1.6747 -0.9397 44 1 5.8434 2.5652 0.5846 45 1 5.4556 2.5227 -5.1092 46 1 5.5611 4.2885 -5.3065 47 1 9.1605 2.6855 -9.6878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266479012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:08 Heat of formation + Delta-G solvation = -70.222050 kcal Electronic energy + Delta-G solvation = -28533.805853 eV Core-core repulsion = 24649.292403 eV Total energy + Delta-G solvation = -3884.513450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15925 -40.69952 -39.36850 -36.68273 -35.53967 -34.61164 -33.14130 -32.58735 -31.65611 -30.33034 -28.03707 -27.70087 -26.80755 -25.52592 -23.92020 -22.60535 -21.56336 -21.16814 -20.09058 -19.33318 -18.54237 -18.32226 -17.32727 -16.90709 -16.78554 -16.58070 -16.24908 -16.17487 -15.91659 -15.74368 -15.21578 -14.90372 -14.77807 -14.58074 -14.45726 -14.04698 -13.80889 -13.68518 -13.65956 -13.32222 -13.20828 -13.08299 -12.98827 -12.88550 -12.75988 -12.64477 -12.53685 -12.15133 -12.06652 -11.83131 -11.72659 -11.30650 -11.15282 -10.97292 -10.74969 -10.32810 -10.10163 -9.82708 -9.37696 -8.70880 -8.36764 -6.15974 1.19699 1.41807 1.42407 1.51050 1.52856 1.62354 1.99099 2.14232 2.25018 2.79802 2.97121 3.17907 3.49545 3.62136 3.69740 3.82968 3.86324 3.98734 4.03908 4.09126 4.15833 4.20192 4.30821 4.39842 4.46882 4.49973 4.54626 4.62179 4.63869 4.66506 4.78352 4.79702 4.83235 4.91010 4.97088 5.09839 5.17938 5.23803 5.24743 5.38659 5.45842 5.53092 5.82482 5.89783 6.17101 6.44139 6.58377 7.03963 7.07297 7.29463 8.72334 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.002812 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.182025 B = 9954.164486 C =11005.411466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.728 5.728 3 C 0.515 3.485 4 O -0.557 6.557 5 C 0.064 3.936 6 H 0.070 0.930 7 C -0.138 4.138 8 N -0.509 5.509 9 C 0.054 3.946 10 C 0.123 3.877 11 H 0.107 0.893 12 C -0.107 4.107 13 C -0.104 4.104 14 C 0.124 3.876 15 H 0.096 0.904 16 C 0.054 3.946 17 N -0.619 5.619 18 C 0.555 3.445 19 O -0.564 6.564 20 C -0.120 4.120 21 S -0.144 6.144 22 C -0.548 4.548 23 H 0.081 0.919 24 C 0.015 3.985 25 N -0.911 5.911 26 Si 0.999 3.001 27 H -0.262 1.262 28 H -0.277 1.277 29 H -0.261 1.261 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.416 0.584 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.661 -5.799 23.333 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.381 5.381 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.047 4.047 6 H 0.088 0.912 7 C -0.196 4.196 8 N -0.235 5.235 9 C -0.075 4.075 10 C 0.020 3.980 11 H 0.125 0.875 12 C -0.145 4.145 13 C -0.142 4.142 14 C 0.021 3.979 15 H 0.114 0.886 16 C -0.074 4.074 17 N -0.354 5.354 18 C 0.344 3.656 19 O -0.443 6.443 20 C -0.271 4.271 21 S 0.083 5.917 22 C -0.696 4.696 23 H 0.099 0.901 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.187 1.187 28 H -0.202 1.202 29 H -0.186 1.186 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.346 -4.770 23.720 29.199 hybrid contribution -0.852 -1.110 -1.970 2.417 sum -17.197 -5.880 21.750 28.344 Atomic orbital electron populations 1.21623 0.78823 1.03995 1.01348 1.45828 1.08370 1.08722 1.75229 1.20711 0.90052 0.83783 0.75385 1.90695 1.70639 1.32547 1.49520 1.21677 0.91386 0.92443 0.99232 0.91189 1.21836 1.02525 1.03637 0.91591 1.61748 1.12090 1.35611 1.14045 1.22528 1.00826 0.96129 0.88031 1.22679 0.78297 0.96283 1.00730 0.87517 1.22360 0.99713 0.96314 0.96127 1.22365 0.94737 0.96536 1.00560 1.22624 1.00364 0.96378 0.78496 0.88589 1.22679 0.86608 0.95778 1.02321 1.49401 1.07645 1.71538 1.06811 1.19665 0.85160 0.75154 0.85658 1.90677 1.17094 1.51665 1.84856 1.23289 1.03582 1.05812 0.94436 1.85534 1.10284 1.95386 1.00506 1.23148 0.95537 1.58186 0.92733 0.90099 1.26130 0.95877 0.93678 1.03315 1.70172 1.07734 1.47205 1.29582 0.85003 0.77852 0.79479 0.75659 1.18673 1.20213 1.18604 0.92957 0.93543 0.87502 0.74854 0.89735 0.90092 0.91621 0.89283 0.95456 0.91429 0.88991 0.88201 0.91631 0.95579 0.86301 0.88148 0.87906 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.70 127.77 1.37 2.18 16 2 N -0.73 -7.87 5.71 -484.51 -2.77 -10.64 16 3 C 0.52 8.85 6.06 87.66 0.53 9.38 16 4 O -0.56 -14.09 15.77 -3.05 -0.05 -14.14 16 5 C 0.06 0.93 2.48 44.17 0.11 1.04 16 6 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 7 C -0.14 -1.38 8.66 71.98 0.62 -0.76 16 8 N -0.51 -9.54 3.19 -871.79 -2.79 -12.33 16 9 C 0.05 1.18 4.72 86.55 0.41 1.59 16 10 C 0.12 2.95 4.07 45.45 0.18 3.13 16 11 H 0.11 2.50 7.46 -2.39 -0.02 2.48 16 12 C -0.11 -2.19 6.14 31.63 0.19 -2.00 16 13 C -0.10 -2.03 6.14 31.63 0.19 -1.83 16 14 C 0.12 2.99 4.20 45.47 0.19 3.18 16 15 H 0.10 2.55 7.95 -2.38 -0.02 2.53 16 16 C 0.05 1.05 4.42 86.57 0.38 1.43 16 17 N -0.62 -18.55 2.78 -755.54 -2.10 -20.65 16 18 C 0.55 22.40 7.95 87.66 0.70 23.10 16 19 O -0.56 -27.56 16.20 -3.01 -0.05 -27.60 16 20 C -0.12 -5.12 5.17 71.24 0.37 -4.75 16 21 S -0.14 -8.23 20.57 -56.49 -1.16 -9.39 16 22 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 23 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 24 C 0.01 0.86 5.49 84.86 0.47 1.32 16 25 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 26 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 29 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.42 2.01 8.83 -92.70 -0.82 1.19 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.70 6.33 -2.39 -0.02 0.69 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 1.99 6.67 -2.38 -0.02 1.98 16 38 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.92 7.81 -2.39 -0.02 1.90 16 41 H 0.10 1.68 7.81 -2.38 -0.02 1.66 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.12 1.66 6.24 -2.38 -0.01 1.65 16 45 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.10 4.05 8.08 -2.40 -0.02 4.03 16 47 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -81.92 386.88 -0.08 -82.00 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.16 Total: 17.12 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.36 Total: 5.80 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -7.37 Total: -99.74 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.10 Total: -41.74 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -81.92 -0.08 -82.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266479012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.777 kcal (2) G-P(sol) polarization free energy of solvation -81.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds