Wall clock time and date at job start Wed Apr 1 2020 00:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99618 * 2 1 4 4 O 1.21281 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99688 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47689 * 327.15093 * 5 3 2 7 7 C 1.52998 * 109.47338 * 87.15461 * 5 3 2 8 8 N 1.46901 * 109.46800 * 207.15406 * 5 3 2 9 9 C 1.46968 * 110.99984 * 188.44992 * 8 5 3 10 10 C 1.54362 * 108.91688 * 180.28436 * 9 8 5 11 11 H 1.08991 * 112.54187 * 187.39085 * 10 9 8 12 12 C 1.54694 * 107.68090 * 312.50638 * 10 9 8 13 13 C 1.53775 * 104.74569 * 87.17171 * 12 10 9 14 14 C 1.54696 * 104.74059 * 359.97438 * 13 12 10 15 15 H 1.08998 * 112.93822 * 147.95115 * 14 13 12 16 16 C 1.46965 * 111.00076 * 63.70107 * 8 5 3 17 17 N 1.48446 * 104.03566 * 25.77817 * 14 13 12 18 18 C 1.34767 * 128.45339 * 137.18071 * 17 14 13 19 19 O 1.21284 * 120.00087 * 0.02562 * 18 17 14 20 20 C 1.50703 * 120.00258 * 180.27790 * 18 17 14 21 21 S 1.80997 * 109.47167 * 179.72397 * 20 18 17 22 22 C 1.76204 * 100.00124 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99400 * 0.02562 * 22 21 20 24 24 C 1.38792 * 120.00394 * 179.97438 * 22 21 20 25 25 N 1.31636 * 119.99746 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00211 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47108 * 60.00298 * 26 24 22 28 28 H 1.48496 * 109.47246 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47239 * 299.99978 * 26 24 22 30 30 H 1.08994 * 109.47339 * 60.00626 * 1 2 3 31 31 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47217 * 300.00058 * 1 2 3 33 33 H 0.96994 * 120.00260 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.47424 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47374 * 299.99718 * 7 5 3 36 36 H 1.08999 * 109.47083 * 59.99975 * 7 5 3 37 37 H 1.09000 * 109.55729 * 300.22597 * 9 8 5 38 38 H 1.09003 * 109.56010 * 60.43639 * 9 8 5 39 39 H 1.08993 * 110.40697 * 205.83612 * 12 10 9 40 40 H 1.09005 * 110.40547 * 328.14325 * 12 10 9 41 41 H 1.09006 * 110.45690 * 241.12802 * 13 12 10 42 42 H 1.08998 * 110.24892 * 118.76919 * 13 12 10 43 43 H 1.08995 * 109.55800 * 59.76691 * 16 8 5 44 44 H 1.09000 * 109.63822 * 299.50291 * 16 8 5 45 45 H 1.08994 * 109.46861 * 299.72355 * 20 18 17 46 46 H 1.09004 * 109.46685 * 59.72678 * 20 18 17 47 47 H 0.97006 * 119.99935 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0094 0.3039 0.5565 7 6 4.1553 1.0960 -1.4415 8 7 4.1356 2.3995 0.6316 9 6 5.5906 2.5310 0.4719 10 6 6.0537 3.8340 1.1577 11 1 7.1032 4.0570 0.9660 12 6 5.1038 4.9673 0.7034 13 6 3.9320 4.9181 1.6981 14 6 4.2817 3.7592 2.6613 15 1 3.9127 3.9224 3.6739 16 6 3.7385 2.4600 2.0453 17 7 5.7629 3.6787 2.6049 18 6 6.6325 3.5117 3.6209 19 8 6.2236 3.4055 4.7578 20 6 8.1132 3.4627 3.3451 21 16 9.0098 3.2391 4.9014 22 6 10.6659 3.2164 4.3001 23 1 10.8579 3.3251 3.2429 24 6 11.7235 3.0599 5.1851 25 7 11.4894 2.9280 6.4737 26 14 13.4792 3.0366 4.5476 27 1 13.7734 4.3197 3.8604 28 1 14.4166 2.8577 5.6853 29 1 13.6434 1.9133 3.5903 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9500 -0.8400 0.0004 34 1 5.2453 1.0965 -1.4419 35 1 3.7918 0.1817 -1.9106 36 1 3.7917 1.9595 -1.9985 37 1 6.0870 1.6773 0.9334 38 1 5.8395 2.5681 -0.5887 39 1 5.6078 5.9319 0.7618 40 1 4.7518 4.7841 -0.3118 41 1 2.9980 4.7094 1.1764 42 1 3.8613 5.8586 2.2445 43 1 4.1518 1.6031 2.5773 44 1 2.6513 2.4470 2.1213 45 1 8.3310 2.6292 2.6774 46 1 8.4265 4.3955 2.8761 47 1 12.2286 2.8183 7.0922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266479013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:12 Heat of formation + Delta-G solvation = -43.596986 kcal Electronic energy + Delta-G solvation = -28486.242396 eV Core-core repulsion = 24602.883496 eV Total energy + Delta-G solvation = -3883.358900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15503 -39.82370 -37.96816 -35.78393 -34.87750 -32.43310 -32.10516 -31.28412 -30.95551 -28.83101 -27.48632 -25.93876 -25.44815 -24.65048 -23.09082 -21.45575 -20.55750 -20.46060 -18.58255 -17.78030 -17.77823 -17.01538 -16.32564 -15.86756 -15.45589 -15.25474 -14.99887 -14.89434 -14.80648 -14.39809 -14.17656 -13.89172 -13.63220 -13.47325 -13.14046 -13.01232 -12.86238 -12.68031 -12.57008 -12.50038 -12.31231 -12.10742 -11.91624 -11.64706 -11.21224 -11.15702 -11.04447 -11.01583 -10.85689 -10.75616 -10.38626 -9.99705 -9.82342 -9.49407 -9.35331 -9.06384 -8.64064 -8.44961 -8.23651 -6.50516 -6.21739 -3.92555 2.33067 2.73199 2.89928 3.07315 3.22790 3.25076 3.28560 3.57755 3.60829 4.19931 4.30421 4.48038 4.58272 4.68403 4.72596 4.79640 4.83822 4.85230 5.05158 5.09238 5.11709 5.13217 5.15559 5.23606 5.36743 5.41228 5.44621 5.50447 5.56016 5.58221 5.70141 5.73731 5.75645 5.84182 5.89352 6.00276 6.00873 6.12247 6.14648 6.23147 6.51427 6.62348 6.78290 7.12380 7.58659 7.81475 7.93181 8.34598 8.59330 9.23189 10.85616 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002523 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.746179 B =11096.216146 C =11329.496266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.741 5.741 3 C 0.517 3.483 4 O -0.514 6.514 5 C 0.066 3.934 6 H 0.059 0.941 7 C -0.143 4.143 8 N -0.508 5.508 9 C 0.043 3.957 10 C 0.129 3.871 11 H 0.107 0.893 12 C -0.113 4.113 13 C -0.115 4.115 14 C 0.137 3.863 15 H 0.105 0.895 16 C 0.047 3.953 17 N -0.628 5.628 18 C 0.554 3.446 19 O -0.517 6.517 20 C -0.145 4.145 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.382 -5.161 -18.906 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.394 5.394 3 C 0.302 3.698 4 O -0.388 6.388 5 C -0.046 4.046 6 H 0.077 0.923 7 C -0.201 4.201 8 N -0.234 5.234 9 C -0.086 4.086 10 C 0.025 3.975 11 H 0.125 0.875 12 C -0.151 4.151 13 C -0.153 4.153 14 C 0.033 3.967 15 H 0.123 0.877 16 C -0.082 4.082 17 N -0.365 5.365 18 C 0.343 3.657 19 O -0.392 6.392 20 C -0.296 4.296 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.495 -4.189 -17.141 27.044 hybrid contribution 2.188 -1.198 -1.288 2.808 sum -18.306 -5.387 -18.429 26.528 Atomic orbital electron populations 1.21515 0.79496 1.02163 1.02362 1.45871 1.07833 1.08793 1.76870 1.20518 0.89676 0.83657 0.75915 1.90710 1.69850 1.31021 1.47189 1.21562 0.91923 0.93119 0.98006 0.92294 1.21843 1.02138 1.02969 0.93157 1.61739 1.12520 1.34119 1.15029 1.22867 0.86863 0.97567 1.01265 1.22571 1.00065 0.94613 0.80277 0.87473 1.22287 0.95585 0.97160 1.00088 1.22308 0.99561 0.96998 0.96438 1.22279 0.80387 0.94331 0.99734 0.87729 1.22657 1.00927 0.97605 0.87002 1.49467 1.06444 1.73740 1.06857 1.19996 0.87335 0.74950 0.83405 1.90706 1.79282 1.48490 1.20684 1.23491 0.93686 1.04692 1.07716 1.85413 1.00389 1.95087 1.02489 1.22810 0.91391 1.58066 0.96043 0.91013 1.24993 0.99453 0.94559 0.94584 1.70015 1.32542 1.46026 1.01706 0.86224 0.82136 0.78774 0.78361 1.19909 1.20811 1.19966 0.92238 0.90730 0.92208 0.76607 0.90820 0.91745 0.90767 0.93947 0.88984 0.91787 0.89765 0.89275 0.91974 0.94427 0.89523 0.89551 0.89329 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.74 -4.81 5.71 -67.08 -0.38 -5.19 16 3 C 0.52 4.93 6.06 -10.99 -0.07 4.86 16 4 O -0.51 -6.82 15.80 5.56 0.09 -6.74 16 5 C 0.07 0.55 2.48 -68.87 -0.17 0.38 16 6 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 7 C -0.14 -0.91 8.65 37.16 0.32 -0.59 16 8 N -0.51 -5.22 3.20 -226.59 -0.72 -5.94 16 9 C 0.04 0.43 4.44 -3.07 -0.01 0.41 16 10 C 0.13 1.49 4.11 -65.27 -0.27 1.22 16 11 H 0.11 1.17 7.45 -51.93 -0.39 0.79 16 12 C -0.11 -1.17 6.11 -25.44 -0.16 -1.32 16 13 C -0.11 -1.31 6.12 -25.44 -0.16 -1.47 16 14 C 0.14 1.84 4.20 -65.60 -0.28 1.56 16 15 H 0.10 1.54 7.94 -51.93 -0.41 1.13 16 16 C 0.05 0.56 4.72 -3.42 -0.02 0.55 16 17 N -0.63 -9.53 2.77 -152.50 -0.42 -9.96 16 18 C 0.55 11.00 7.95 -10.99 -0.09 10.92 16 19 O -0.52 -12.33 16.20 5.55 0.09 -12.24 16 20 C -0.15 -3.02 5.16 36.01 0.19 -2.83 16 21 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 22 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 23 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 26 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 1.53 8.83 -40.82 -0.36 1.17 16 34 H 0.07 0.42 6.32 -51.93 -0.33 0.09 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.71 6.23 -51.93 -0.32 0.39 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 41 H 0.09 1.04 7.81 -51.93 -0.41 0.64 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.07 6.69 -51.93 -0.35 0.72 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.09 1.72 8.07 -51.91 -0.42 1.30 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -36.62 386.87 -9.47 -46.09 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.58 Total: -0.68 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 0.14 Total: 1.86 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.80 Total: -46.61 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.62 -9.47 -46.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266479013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.496 kcal (2) G-P(sol) polarization free energy of solvation -36.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds