Wall clock time and date at job start Wed Apr 1 2020 00:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99618 * 2 1 4 4 O 1.21281 * 119.99792 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99688 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47689 * 327.15093 * 5 3 2 7 7 C 1.52998 * 109.47338 * 87.15461 * 5 3 2 8 8 N 1.46901 * 109.46800 * 207.15406 * 5 3 2 9 9 C 1.46968 * 110.99984 * 188.44992 * 8 5 3 10 10 C 1.54362 * 108.91688 * 180.28436 * 9 8 5 11 11 H 1.08991 * 112.54187 * 187.39085 * 10 9 8 12 12 C 1.54694 * 107.68090 * 312.50638 * 10 9 8 13 13 C 1.53775 * 104.74569 * 87.17171 * 12 10 9 14 14 C 1.54696 * 104.74059 * 359.97438 * 13 12 10 15 15 H 1.08998 * 112.93822 * 147.95115 * 14 13 12 16 16 C 1.46965 * 111.00076 * 63.70107 * 8 5 3 17 17 N 1.48446 * 104.03566 * 25.77817 * 14 13 12 18 18 C 1.34767 * 128.45339 * 137.18071 * 17 14 13 19 19 O 1.21284 * 120.00087 * 0.02562 * 18 17 14 20 20 C 1.50703 * 120.00258 * 180.27790 * 18 17 14 21 21 S 1.80997 * 109.47167 * 179.72397 * 20 18 17 22 22 C 1.76204 * 100.00124 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99400 * 0.02562 * 22 21 20 24 24 C 1.38792 * 120.00394 * 179.97438 * 22 21 20 25 25 N 1.31636 * 119.99746 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00211 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47108 * 60.00298 * 26 24 22 28 28 H 1.48496 * 109.47246 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47239 * 299.99978 * 26 24 22 30 30 H 1.08994 * 109.47339 * 60.00626 * 1 2 3 31 31 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47217 * 300.00058 * 1 2 3 33 33 H 0.96994 * 120.00260 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.47424 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47374 * 299.99718 * 7 5 3 36 36 H 1.08999 * 109.47083 * 59.99975 * 7 5 3 37 37 H 1.09000 * 109.55729 * 300.22597 * 9 8 5 38 38 H 1.09003 * 109.56010 * 60.43639 * 9 8 5 39 39 H 1.08993 * 110.40697 * 205.83612 * 12 10 9 40 40 H 1.09005 * 110.40547 * 328.14325 * 12 10 9 41 41 H 1.09006 * 110.45690 * 241.12802 * 13 12 10 42 42 H 1.08998 * 110.24892 * 118.76919 * 13 12 10 43 43 H 1.08995 * 109.55800 * 59.76691 * 16 8 5 44 44 H 1.09000 * 109.63822 * 299.50291 * 16 8 5 45 45 H 1.08994 * 109.46861 * 299.72355 * 20 18 17 46 46 H 1.09004 * 109.46685 * 59.72678 * 20 18 17 47 47 H 0.97006 * 119.99935 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0094 0.3039 0.5565 7 6 4.1553 1.0960 -1.4415 8 7 4.1356 2.3995 0.6316 9 6 5.5906 2.5310 0.4719 10 6 6.0537 3.8340 1.1577 11 1 7.1032 4.0570 0.9660 12 6 5.1038 4.9673 0.7034 13 6 3.9320 4.9181 1.6981 14 6 4.2817 3.7592 2.6613 15 1 3.9127 3.9224 3.6739 16 6 3.7385 2.4600 2.0453 17 7 5.7629 3.6787 2.6049 18 6 6.6325 3.5117 3.6209 19 8 6.2236 3.4055 4.7578 20 6 8.1132 3.4627 3.3451 21 16 9.0098 3.2391 4.9014 22 6 10.6659 3.2164 4.3001 23 1 10.8579 3.3251 3.2429 24 6 11.7235 3.0599 5.1851 25 7 11.4894 2.9280 6.4737 26 14 13.4792 3.0366 4.5476 27 1 13.7734 4.3197 3.8604 28 1 14.4166 2.8577 5.6853 29 1 13.6434 1.9133 3.5903 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9500 -0.8400 0.0004 34 1 5.2453 1.0965 -1.4419 35 1 3.7918 0.1817 -1.9106 36 1 3.7917 1.9595 -1.9985 37 1 6.0870 1.6773 0.9334 38 1 5.8395 2.5681 -0.5887 39 1 5.6078 5.9319 0.7618 40 1 4.7518 4.7841 -0.3118 41 1 2.9980 4.7094 1.1764 42 1 3.8613 5.8586 2.2445 43 1 4.1518 1.6031 2.5773 44 1 2.6513 2.4470 2.1213 45 1 8.3310 2.6292 2.6774 46 1 8.4265 4.3955 2.8761 47 1 12.2286 2.8183 7.0922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266479013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:11 Heat of formation + Delta-G solvation = -70.586361 kcal Electronic energy + Delta-G solvation = -28487.412743 eV Core-core repulsion = 24602.883496 eV Total energy + Delta-G solvation = -3884.529247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15651 -40.70485 -39.37031 -36.67901 -35.55327 -34.59006 -33.29865 -32.36860 -31.69625 -30.35496 -28.04297 -27.68968 -26.74238 -25.57431 -23.90975 -22.58684 -21.56310 -21.17526 -20.09648 -19.31382 -18.58293 -18.27833 -17.33280 -16.88759 -16.78320 -16.55921 -16.23711 -16.19581 -16.02107 -15.60290 -15.25437 -14.92162 -14.70982 -14.63945 -14.43622 -13.97811 -13.88356 -13.70507 -13.59259 -13.30526 -13.17781 -13.09474 -13.04014 -12.86533 -12.74617 -12.62744 -12.52043 -12.13779 -12.08593 -11.83057 -11.71660 -11.29404 -11.13100 -10.96907 -10.75795 -10.29468 -10.11413 -9.82092 -9.37363 -8.69311 -8.34734 -6.14013 1.21304 1.43717 1.44329 1.52254 1.54544 1.61817 2.00288 2.14426 2.26961 2.79538 2.99335 3.20769 3.51494 3.58882 3.76020 3.80796 3.86274 3.98839 4.04255 4.09654 4.17317 4.24021 4.30053 4.42478 4.45576 4.48844 4.53389 4.62096 4.63259 4.68677 4.79749 4.81371 4.83131 4.93381 4.96136 5.09876 5.17050 5.24818 5.26120 5.40964 5.44845 5.53127 5.80885 5.92268 6.19273 6.47145 6.57506 7.05998 7.08180 7.28691 8.74333 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002523 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.746179 B =11096.216146 C =11329.496266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.729 5.729 3 C 0.513 3.487 4 O -0.558 6.558 5 C 0.064 3.936 6 H 0.070 0.930 7 C -0.138 4.138 8 N -0.509 5.509 9 C 0.047 3.953 10 C 0.120 3.880 11 H 0.120 0.880 12 C -0.104 4.104 13 C -0.105 4.105 14 C 0.128 3.872 15 H 0.083 0.917 16 C 0.060 3.940 17 N -0.619 5.619 18 C 0.552 3.448 19 O -0.570 6.570 20 C -0.116 4.116 21 S -0.152 6.152 22 C -0.544 4.544 23 H 0.084 0.916 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 1.000 3.000 27 H -0.261 1.261 28 H -0.280 1.280 29 H -0.260 1.260 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.416 0.584 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.668 -5.839 -22.583 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.382 5.382 3 C 0.299 3.701 4 O -0.435 6.435 5 C -0.047 4.047 6 H 0.087 0.913 7 C -0.195 4.195 8 N -0.235 5.235 9 C -0.081 4.081 10 C 0.017 3.983 11 H 0.138 0.862 12 C -0.142 4.142 13 C -0.144 4.144 14 C 0.025 3.975 15 H 0.101 0.899 16 C -0.069 4.069 17 N -0.354 5.354 18 C 0.341 3.659 19 O -0.449 6.449 20 C -0.267 4.267 21 S 0.075 5.925 22 C -0.692 4.692 23 H 0.102 0.898 24 C -0.192 4.192 25 N -0.549 5.549 26 Si 0.821 3.179 27 H -0.186 1.186 28 H -0.205 1.205 29 H -0.185 1.185 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.252 0.748 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.813 -4.904 -20.892 29.207 hybrid contribution 1.781 -1.021 -0.218 2.065 sum -18.031 -5.925 -21.110 28.388 Atomic orbital electron populations 1.21620 0.78863 1.04013 1.01296 1.45831 1.08369 1.08734 1.75266 1.20779 0.90212 0.83758 0.75333 1.90692 1.70682 1.32613 1.49544 1.21684 0.91253 0.92436 0.99369 0.91257 1.21843 1.02745 1.03625 0.91314 1.61740 1.12802 1.35613 1.13347 1.22913 0.86357 0.96052 1.02819 1.22983 1.01350 0.96264 0.77668 0.86195 1.22272 0.94520 0.97013 1.00394 1.22228 1.00180 0.95839 0.96125 1.22434 0.79253 0.96330 0.99529 0.89921 1.22416 1.00374 0.95878 0.88193 1.49408 1.06765 1.71448 1.07781 1.19801 0.87444 0.75068 0.83549 1.90683 1.79896 1.51372 1.22970 1.23264 0.93446 1.06279 1.03691 1.85641 1.02554 1.95526 1.08806 1.23145 0.91338 1.58016 0.96686 0.89764 1.26160 1.04697 0.93710 0.94663 1.70191 1.34116 1.47197 1.03368 0.84983 0.75423 0.79557 0.77908 1.18575 1.20500 1.18471 0.92912 0.87428 0.93699 0.74848 0.89684 0.89832 0.91585 0.94872 0.85714 0.91026 0.87969 0.89205 0.92045 0.96197 0.89944 0.87560 0.87485 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.70 127.77 1.37 2.21 16 2 N -0.73 -8.17 5.71 -484.53 -2.77 -10.94 16 3 C 0.51 9.09 6.06 87.66 0.53 9.62 16 4 O -0.56 -14.52 15.80 -3.03 -0.05 -14.57 16 5 C 0.06 0.93 2.48 44.17 0.11 1.04 16 6 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 7 C -0.14 -1.29 8.65 71.98 0.62 -0.67 16 8 N -0.51 -9.53 3.20 -870.80 -2.79 -12.31 16 9 C 0.05 0.79 4.44 86.75 0.39 1.18 16 10 C 0.12 2.48 4.11 45.66 0.19 2.66 16 11 H 0.12 2.22 7.45 -2.39 -0.02 2.20 16 12 C -0.10 -1.88 6.11 31.43 0.19 -1.68 16 13 C -0.11 -2.31 6.12 31.43 0.19 -2.11 16 14 C 0.13 3.48 4.20 45.43 0.19 3.67 16 15 H 0.08 2.60 7.94 -2.39 -0.02 2.58 16 16 C 0.06 1.45 4.72 86.53 0.41 1.86 16 17 N -0.62 -18.50 2.77 -754.79 -2.09 -20.59 16 18 C 0.55 22.25 7.95 87.66 0.70 22.95 16 19 O -0.57 -28.49 16.20 -3.04 -0.05 -28.54 16 20 C -0.12 -4.77 5.16 71.24 0.37 -4.40 16 21 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 22 C -0.54 -31.07 9.50 67.95 0.65 -30.42 16 23 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 24 C 0.01 0.70 5.49 84.85 0.47 1.17 16 25 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 26 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 29 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.32 16 32 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.42 2.13 8.83 -92.71 -0.82 1.31 16 34 H 0.08 0.62 6.32 -2.39 -0.02 0.61 16 35 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.13 1.38 6.23 -2.39 -0.01 1.36 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.56 7.82 -2.38 -0.02 1.54 16 41 H 0.09 2.01 7.81 -2.38 -0.02 1.99 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 43 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 2.07 6.69 -2.39 -0.02 2.06 16 45 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 46 H 0.11 4.00 8.07 -2.39 -0.02 3.98 16 47 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -83.35 386.87 -0.07 -83.42 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.16 Total: 16.94 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.36 Total: 7.08 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -7.36 Total: -99.90 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.10 Total: -43.11 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -83.35 -0.07 -83.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266479013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.830 kcal (2) G-P(sol) polarization free energy of solvation -83.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds