Wall clock time and date at job start Wed Apr 1 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99740 * 2 1 4 4 N 1.46500 * 109.46992 * 124.99934 * 3 2 1 5 5 C 1.34780 * 119.99749 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00007 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00074 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.46488 * 60.00506 * 7 5 4 9 9 C 1.52999 * 109.47358 * 300.00603 * 7 5 4 10 10 N 1.46901 * 109.47107 * 180.02562 * 7 5 4 11 11 C 1.46902 * 110.99568 * 205.00435 * 10 7 5 12 12 H 1.08999 * 112.90890 * 336.24766 * 11 10 7 13 13 C 1.53780 * 113.61667 * 107.50401 * 11 10 7 14 14 C 1.53777 * 87.08498 * 139.97579 * 13 11 10 15 15 H 1.09007 * 113.69009 * 89.12362 * 14 13 11 16 16 N 1.46497 * 113.61648 * 220.02218 * 14 13 11 17 17 C 1.34777 * 119.99525 * 252.49385 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 C 1.53787 * 87.08211 * 334.56860 * 14 13 11 30 30 H 1.07996 * 119.99881 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00135 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.00650 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47124 * 4.99519 * 3 2 1 34 34 H 1.09004 * 109.47080 * 244.99729 * 3 2 1 35 35 H 0.96992 * 120.00268 * 359.97438 * 4 3 2 36 36 H 1.09007 * 109.47004 * 59.99363 * 9 7 5 37 37 H 1.08997 * 109.46898 * 179.97438 * 9 7 5 38 38 H 1.08996 * 109.46922 * 299.99820 * 9 7 5 39 39 H 1.00897 * 110.99557 * 328.95417 * 10 7 5 40 40 H 1.09004 * 113.61194 * 25.42471 * 13 11 10 41 41 H 1.08994 * 113.61618 * 254.52997 * 13 11 10 42 42 H 0.97000 * 120.00580 * 72.50131 * 16 14 13 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 46 46 H 1.08997 * 113.61747 * 139.97438 * 29 14 13 47 47 H 1.08998 * 113.61693 * 270.79928 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4088 1.3329 6 8 3.7150 3.3557 0.5777 7 6 4.7354 2.4367 2.4971 8 1 5.4401 1.6099 2.4081 9 6 3.9520 2.3007 3.8042 10 7 5.4699 3.7089 2.4970 11 6 6.7615 3.5710 3.1831 12 1 6.7773 2.7468 3.8962 13 6 7.9693 3.5853 2.2314 14 6 8.6905 4.4414 3.2858 15 1 9.2342 3.8563 4.0277 16 7 9.4954 5.5231 2.7130 17 6 10.8405 5.4401 2.7232 18 8 11.3847 4.4698 3.2062 19 6 11.6684 6.5501 2.1285 20 16 13.4251 6.1438 2.2867 21 6 14.1377 7.5680 1.5328 22 1 13.5011 8.3512 1.1485 23 6 15.5173 7.6839 1.4337 24 7 16.2933 6.7301 1.9034 25 14 16.2728 9.1941 0.6350 26 1 15.1930 10.1126 0.1926 27 1 17.1437 9.8897 1.6163 28 1 17.0822 8.7805 -0.5393 29 6 7.2981 4.8929 3.7574 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4027 -0.9314 35 1 3.0445 0.5749 1.7356 36 1 3.4067 1.3568 3.8045 37 1 4.6440 2.3204 4.6462 38 1 3.2473 3.1274 3.8931 39 1 5.5948 4.0541 1.5572 40 1 7.7816 4.1118 1.2956 41 1 8.4200 2.6041 2.0830 42 1 9.0603 6.2991 2.3265 43 1 11.4160 6.6669 1.0745 44 1 11.4618 7.4808 2.6569 45 1 17.2575 6.8109 1.8339 46 1 7.2068 4.9670 4.8410 47 1 6.9274 5.7777 3.2399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266668099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:00 Heat of formation + Delta-G solvation = -33.749487 kcal Electronic energy + Delta-G solvation = -25852.922556 eV Core-core repulsion = 21969.990675 eV Total energy + Delta-G solvation = -3882.931881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60159 -39.82931 -38.24841 -36.42442 -35.30611 -33.48094 -32.84520 -32.41165 -30.01156 -28.80733 -26.96072 -25.85811 -25.49527 -24.52257 -22.69821 -21.10346 -20.50216 -20.20645 -19.95346 -17.83002 -17.63057 -17.11039 -16.43843 -16.32605 -16.15053 -15.60423 -15.29827 -15.03996 -14.79202 -14.67592 -14.42433 -13.92819 -13.91155 -13.62837 -13.15488 -13.07494 -12.99499 -12.72197 -12.66969 -12.61595 -12.45582 -12.15240 -11.82430 -11.78393 -11.34841 -11.08862 -11.05798 -10.99680 -10.92721 -10.72301 -10.51987 -10.02689 -9.78381 -9.57320 -9.34865 -9.06256 -8.91788 -8.66020 -8.21371 -6.48152 -6.20415 -3.90595 1.44177 2.16523 2.73889 3.07218 3.09594 3.22802 3.29705 3.34819 3.66593 3.88661 4.12267 4.21949 4.25180 4.35131 4.42040 4.45932 4.61006 4.71262 4.73067 4.81778 4.95775 5.10335 5.14947 5.16205 5.16990 5.22122 5.33092 5.40368 5.55472 5.59258 5.65928 5.72666 5.78264 5.82313 5.82694 5.89229 5.92147 6.04888 6.06859 6.17225 6.62461 6.72054 6.92612 7.06824 7.61553 7.71362 7.76363 8.37061 8.64723 9.25212 10.87124 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.001493 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.665641 B =18749.326105 C =19233.914678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.530 6.530 7 C 0.066 3.934 8 H 0.073 0.927 9 C -0.136 4.136 10 N -0.659 5.659 11 C 0.068 3.932 12 H 0.101 0.899 13 C -0.182 4.182 14 C 0.128 3.872 15 H 0.115 0.885 16 N -0.727 5.727 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 C -0.131 4.131 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.402 0.598 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.359 0.641 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.399 0.601 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.076 0.924 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.735 -13.177 0.946 35.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.299 3.701 6 O -0.405 6.405 7 C -0.047 4.047 8 H 0.091 0.909 9 C -0.195 4.195 10 N -0.294 5.294 11 C -0.043 4.043 12 H 0.119 0.881 13 C -0.223 4.223 14 C 0.021 3.979 15 H 0.133 0.867 16 N -0.380 5.380 17 C 0.319 3.681 18 O -0.394 6.394 19 C -0.305 4.305 20 S 0.165 5.835 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.170 4.170 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.182 0.818 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -32.014 -13.905 1.753 34.947 hybrid contribution 0.161 1.490 -1.743 2.299 sum -31.853 -12.415 0.010 34.187 Atomic orbital electron populations 1.24012 0.95782 1.02553 0.97766 1.22998 0.96268 0.98048 1.02408 1.20426 0.91836 0.95683 0.89791 1.45956 1.41135 1.20040 1.30891 1.20759 0.81180 0.82140 0.86065 1.90724 1.67774 1.35020 1.46982 1.21505 0.95250 0.93826 0.94145 0.90915 1.21774 1.00397 1.01854 0.95440 1.60429 1.19123 1.24884 1.24959 1.22923 0.85973 0.98650 0.96750 0.88059 1.24235 0.97648 1.01475 0.98958 1.22213 0.90113 0.89526 0.96003 0.86724 1.45958 1.06149 1.23003 1.62844 1.20348 0.81819 0.87691 0.78227 1.90688 1.71385 1.32801 1.44484 1.23544 1.04020 0.99616 1.03327 1.85375 0.89881 1.29424 1.78782 1.22918 0.94275 1.06317 1.44780 0.90877 1.24989 0.96051 0.97216 0.95314 1.70031 1.04645 1.32219 1.43450 0.86119 0.79028 0.81485 0.78882 1.19603 1.20560 1.20582 1.23439 0.93903 0.98082 1.01609 0.87769 0.88098 0.86608 0.90933 0.90551 0.76321 0.92254 0.91165 0.91304 0.81838 0.89445 0.91010 0.76676 0.89244 0.89193 0.92259 0.90542 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 14.32 29.01 0.42 -0.10 16 2 C -0.18 -0.64 9.63 -36.02 -0.35 -0.99 16 3 C 0.15 0.81 6.11 -5.19 -0.03 0.78 16 4 N -0.73 -3.99 5.44 -61.47 -0.33 -4.32 16 5 C 0.51 4.28 7.18 -10.98 -0.08 4.20 16 6 O -0.53 -6.57 15.65 5.55 0.09 -6.48 16 7 C 0.07 0.44 2.88 -68.86 -0.20 0.25 16 8 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 9 C -0.14 -0.70 9.30 37.16 0.35 -0.36 16 10 N -0.66 -5.58 6.30 -100.10 -0.63 -6.21 16 11 C 0.07 0.55 3.88 -66.90 -0.26 0.29 16 12 H 0.10 0.71 7.49 -51.93 -0.39 0.32 16 13 C -0.18 -1.81 7.49 -25.92 -0.19 -2.01 16 14 C 0.13 1.47 4.24 -67.12 -0.28 1.19 16 15 H 0.11 1.51 7.47 -51.93 -0.39 1.13 16 16 N -0.73 -9.80 5.35 -53.01 -0.28 -10.09 16 17 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 18 O -0.52 -11.82 15.46 5.55 0.09 -11.73 16 19 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 29 C -0.13 -1.16 7.63 -25.91 -0.20 -1.35 16 30 H 0.10 0.22 8.06 -52.49 -0.42 -0.21 16 31 H 0.10 0.31 7.84 -52.49 -0.41 -0.10 16 32 H 0.12 0.30 8.06 -52.48 -0.42 -0.12 16 33 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 1.16 7.88 -40.82 -0.32 0.84 16 36 H 0.06 0.18 7.57 -51.92 -0.39 -0.21 16 37 H 0.07 0.35 7.74 -51.93 -0.40 -0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.36 3.56 6.91 -39.29 -0.27 3.29 16 40 H 0.09 0.89 7.82 -51.93 -0.41 0.49 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.40 4.32 8.73 -40.82 -0.36 3.97 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 408.82 15.07 6.16 6.16 Total: -1.00 -36.57 408.82 -9.41 -45.98 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.50 Total: 3.81 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.50 Total: -4.18 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.52 Total: -46.24 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.17 Total: -18.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.57 -9.41 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266668099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.235 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds