Wall clock time and date at job start Wed Apr 1 2020 00:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99740 * 2 1 4 4 N 1.46500 * 109.46992 * 124.99934 * 3 2 1 5 5 C 1.34780 * 119.99749 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00007 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00074 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.46488 * 60.00506 * 7 5 4 9 9 C 1.52999 * 109.47358 * 300.00603 * 7 5 4 10 10 N 1.46901 * 109.47107 * 180.02562 * 7 5 4 11 11 C 1.46902 * 110.99568 * 205.00435 * 10 7 5 12 12 H 1.08999 * 112.90890 * 336.24766 * 11 10 7 13 13 C 1.53780 * 113.61667 * 107.50401 * 11 10 7 14 14 C 1.53777 * 87.08498 * 139.97579 * 13 11 10 15 15 H 1.09007 * 113.69009 * 89.12362 * 14 13 11 16 16 N 1.46497 * 113.61648 * 220.02218 * 14 13 11 17 17 C 1.34777 * 119.99525 * 252.49385 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 C 1.53787 * 87.08211 * 334.56860 * 14 13 11 30 30 H 1.07996 * 119.99881 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00135 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.00650 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47124 * 4.99519 * 3 2 1 34 34 H 1.09004 * 109.47080 * 244.99729 * 3 2 1 35 35 H 0.96992 * 120.00268 * 359.97438 * 4 3 2 36 36 H 1.09007 * 109.47004 * 59.99363 * 9 7 5 37 37 H 1.08997 * 109.46898 * 179.97438 * 9 7 5 38 38 H 1.08996 * 109.46922 * 299.99820 * 9 7 5 39 39 H 1.00897 * 110.99557 * 328.95417 * 10 7 5 40 40 H 1.09004 * 113.61194 * 25.42471 * 13 11 10 41 41 H 1.08994 * 113.61618 * 254.52997 * 13 11 10 42 42 H 0.97000 * 120.00580 * 72.50131 * 16 14 13 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 46 46 H 1.08997 * 113.61747 * 139.97438 * 29 14 13 47 47 H 1.08998 * 113.61693 * 270.79928 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4088 1.3329 6 8 3.7150 3.3557 0.5777 7 6 4.7354 2.4367 2.4971 8 1 5.4401 1.6099 2.4081 9 6 3.9520 2.3007 3.8042 10 7 5.4699 3.7089 2.4970 11 6 6.7615 3.5710 3.1831 12 1 6.7773 2.7468 3.8962 13 6 7.9693 3.5853 2.2314 14 6 8.6905 4.4414 3.2858 15 1 9.2342 3.8563 4.0277 16 7 9.4954 5.5231 2.7130 17 6 10.8405 5.4401 2.7232 18 8 11.3847 4.4698 3.2062 19 6 11.6684 6.5501 2.1285 20 16 13.4251 6.1438 2.2867 21 6 14.1377 7.5680 1.5328 22 1 13.5011 8.3512 1.1485 23 6 15.5173 7.6839 1.4337 24 7 16.2933 6.7301 1.9034 25 14 16.2728 9.1941 0.6350 26 1 15.1930 10.1126 0.1926 27 1 17.1437 9.8897 1.6163 28 1 17.0822 8.7805 -0.5393 29 6 7.2981 4.8929 3.7574 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4027 -0.9314 35 1 3.0445 0.5749 1.7356 36 1 3.4067 1.3568 3.8045 37 1 4.6440 2.3204 4.6462 38 1 3.2473 3.1274 3.8931 39 1 5.5948 4.0541 1.5572 40 1 7.7816 4.1118 1.2956 41 1 8.4200 2.6041 2.0830 42 1 9.0603 6.2991 2.3265 43 1 11.4160 6.6669 1.0745 44 1 11.4618 7.4808 2.6569 45 1 17.2575 6.8109 1.8339 46 1 7.2068 4.9670 4.8410 47 1 6.9274 5.7777 3.2399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266668099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:59 Heat of formation + Delta-G solvation = -62.293239 kcal Electronic energy + Delta-G solvation = -25854.160306 eV Core-core repulsion = 21969.990675 eV Total energy + Delta-G solvation = -3884.169631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35495 -40.82528 -39.41706 -36.92493 -36.08514 -34.59473 -34.32573 -33.61843 -31.02358 -29.95677 -27.68173 -27.40325 -26.63751 -25.22379 -23.50612 -21.73519 -21.51800 -21.05976 -20.53641 -19.77123 -18.26233 -17.91491 -17.70193 -17.19638 -16.88833 -16.88561 -16.47576 -16.20191 -16.07762 -15.72547 -15.44120 -15.11659 -14.66679 -14.47023 -14.34651 -14.14467 -13.99059 -13.57239 -13.43613 -13.37397 -13.21485 -13.16495 -13.03119 -12.91475 -12.66149 -12.58355 -12.11346 -12.07745 -11.91425 -11.76811 -11.66747 -11.16234 -11.03834 -10.88012 -10.50545 -10.28075 -10.09264 -10.03478 -9.38741 -8.66976 -8.35411 -6.13296 1.15251 1.27167 1.40902 1.46932 1.54047 1.58425 1.60292 2.21583 2.26662 2.36305 2.98869 3.13815 3.32243 3.57058 3.66152 3.70888 3.85254 3.89278 3.95531 4.02517 4.13184 4.16046 4.28546 4.30320 4.50378 4.52829 4.54327 4.71868 4.76852 4.78363 4.83975 4.93307 4.98936 4.99221 5.10131 5.15586 5.30156 5.34789 5.41654 5.59221 5.63492 5.75797 6.01598 6.19567 6.27872 6.50723 6.53910 7.06149 7.16272 7.25921 8.74173 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.001493 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.665641 B =18749.326105 C =19233.914678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C 0.145 3.855 4 N -0.712 5.712 5 C 0.509 3.491 6 O -0.577 6.577 7 C 0.067 3.933 8 H 0.090 0.910 9 C -0.132 4.132 10 N -0.666 5.666 11 C 0.083 3.917 12 H 0.119 0.881 13 C -0.179 4.179 14 C 0.114 3.886 15 H 0.098 0.902 16 N -0.702 5.702 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.132 4.132 20 S -0.150 6.150 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.274 1.274 29 C -0.118 4.118 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.417 0.583 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.350 0.650 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.087 0.913 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.862 -12.987 0.919 37.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.365 5.365 5 C 0.296 3.704 6 O -0.456 6.456 7 C -0.046 4.046 8 H 0.108 0.892 9 C -0.190 4.190 10 N -0.299 5.299 11 C -0.028 4.028 12 H 0.137 0.863 13 C -0.220 4.220 14 C 0.009 3.991 15 H 0.116 0.884 16 N -0.355 5.355 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.283 4.283 20 S 0.077 5.923 21 C -0.695 4.695 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.199 1.199 29 C -0.157 4.157 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.172 0.828 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.252 0.748 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -34.224 -13.743 1.743 36.921 hybrid contribution 0.642 1.364 -1.733 2.297 sum -33.582 -12.379 0.009 35.791 Atomic orbital electron populations 1.24177 0.95720 1.03219 0.96653 1.22940 0.96340 0.97376 1.03338 1.20406 0.91584 0.96619 0.89236 1.45876 1.40062 1.19756 1.30809 1.21111 0.81395 0.81971 0.85965 1.90702 1.69344 1.36872 1.48725 1.21623 0.95208 0.93576 0.94220 0.89191 1.21775 1.00181 1.02546 0.94505 1.60456 1.19040 1.26013 1.24422 1.22852 0.85093 0.98738 0.96104 0.86331 1.24211 0.98269 1.00647 0.98839 1.22443 0.90717 0.89390 0.96589 0.88431 1.45761 1.04336 1.23972 1.61398 1.20080 0.83326 0.86579 0.77965 1.90675 1.72594 1.34318 1.46840 1.23397 0.98925 1.00993 1.04970 1.85533 0.96454 1.30931 1.79363 1.23245 0.95005 1.06385 1.44857 0.90023 1.26113 0.96525 1.00708 0.95677 1.70188 1.05099 1.34641 1.44846 0.84910 0.78199 0.77062 0.77800 1.18124 1.19821 1.19901 1.23373 0.91325 0.98665 1.02333 0.86265 0.88323 0.85218 0.92112 0.91882 0.74556 0.89845 0.90486 0.92822 0.82826 0.89619 0.91662 0.74791 0.87463 0.87259 0.91966 0.89470 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 14.32 67.78 0.97 0.22 16 2 C -0.18 -1.04 9.63 25.65 0.25 -0.79 16 3 C 0.14 1.55 6.11 85.63 0.52 2.07 16 4 N -0.71 -6.91 5.44 -466.77 -2.54 -9.45 16 5 C 0.51 8.06 7.18 87.66 0.63 8.69 16 6 O -0.58 -14.47 15.65 -3.05 -0.05 -14.51 16 7 C 0.07 0.77 2.88 44.17 0.13 0.90 16 8 H 0.09 0.76 7.84 -2.39 -0.02 0.75 16 9 C -0.13 -1.03 9.30 71.98 0.67 -0.36 16 10 N -0.67 -10.21 6.30 -470.60 -2.97 -13.18 16 11 C 0.08 1.17 3.88 45.44 0.18 1.34 16 12 H 0.12 1.31 7.49 -2.39 -0.02 1.29 16 13 C -0.18 -3.35 7.49 31.12 0.23 -3.12 16 14 C 0.11 2.50 4.24 45.52 0.19 2.70 16 15 H 0.10 2.55 7.47 -2.38 -0.02 2.54 16 16 N -0.70 -18.10 5.35 -440.03 -2.36 -20.46 16 17 C 0.53 20.04 7.85 87.66 0.69 20.73 16 18 O -0.57 -26.40 15.46 -3.04 -0.05 -26.45 16 19 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 20 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 21 C -0.55 -31.67 9.50 67.95 0.65 -31.03 16 22 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.83 5.49 84.86 0.47 1.30 16 24 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 25 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 C -0.12 -1.82 7.63 31.12 0.24 -1.59 16 30 H 0.12 0.22 8.06 -2.91 -0.02 0.20 16 31 H 0.10 0.50 7.84 -2.91 -0.02 0.48 16 32 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.06 0.80 7.79 -2.39 -0.02 0.78 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.42 1.46 7.88 -92.71 -0.73 0.72 16 36 H 0.08 0.24 7.57 -2.38 -0.02 0.22 16 37 H 0.08 0.53 7.74 -2.39 -0.02 0.51 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.35 6.65 6.91 -89.70 -0.62 6.03 16 40 H 0.09 1.66 7.82 -2.38 -0.02 1.64 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.41 8.12 8.73 -92.71 -0.81 7.31 16 43 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 44 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.10 1.44 8.12 -2.39 -0.02 1.43 16 Total: -1.00 -82.47 408.82 -1.73 -84.20 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -1.17 Total: 23.30 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 6.25 Total: -3.83 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -7.58 Total: -99.21 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.09 Total: -40.96 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.47 -1.73 -84.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266668099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.902 kcal (2) G-P(sol) polarization free energy of solvation -82.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds