Wall clock time and date at job start Wed Apr 1 2020 00:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 120.00052 * 2 1 4 4 N 1.46498 * 109.46880 * 125.00424 * 3 2 1 5 5 C 1.34786 * 119.99707 * 180.02562 * 4 3 2 6 6 O 1.21273 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99929 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.47317 * 300.00299 * 7 5 4 9 9 C 1.53006 * 109.46975 * 59.99948 * 7 5 4 10 10 N 1.46900 * 109.47119 * 180.02562 * 7 5 4 11 11 C 1.46899 * 110.99925 * 155.00101 * 10 7 5 12 12 H 1.08999 * 112.85021 * 336.19504 * 11 10 7 13 13 C 1.53959 * 113.74284 * 107.40286 * 11 10 7 14 14 C 1.53781 * 87.01918 * 139.94348 * 13 11 10 15 15 H 1.09001 * 113.61536 * 89.22969 * 14 13 11 16 16 N 1.46498 * 113.61116 * 220.04907 * 14 13 11 17 17 C 1.34777 * 119.99828 * 253.85697 * 16 14 13 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 14 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 14 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 C 1.53776 * 113.61313 * 204.99976 * 11 10 7 30 30 H 1.08008 * 120.00345 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00283 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00128 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46912 * 5.00229 * 3 2 1 34 34 H 1.09004 * 109.46868 * 244.99873 * 3 2 1 35 35 H 0.97003 * 120.00541 * 359.97438 * 4 3 2 36 36 H 1.09008 * 109.46711 * 179.97438 * 9 7 5 37 37 H 1.08994 * 109.47217 * 299.99672 * 9 7 5 38 38 H 1.08998 * 109.47123 * 60.00096 * 9 7 5 39 39 H 1.00902 * 110.99991 * 31.04724 * 10 7 5 40 40 H 1.08995 * 113.61644 * 25.42025 * 13 11 10 41 41 H 1.09006 * 113.66662 * 254.46997 * 13 11 10 42 42 H 0.97001 * 120.00384 * 74.14144 * 16 14 13 43 43 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 44 44 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 45 45 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 46 46 H 1.09000 * 113.61546 * 105.38657 * 29 11 10 47 47 H 1.08999 * 113.61714 * 334.48324 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 3.7783 2.4090 1.3334 6 8 3.7144 3.3558 0.5784 7 6 4.7349 2.4367 2.4975 8 1 4.1769 2.3390 3.4288 9 6 5.7247 1.2768 2.3720 10 7 5.4686 3.7094 2.4982 11 6 5.9375 4.0460 3.8490 12 1 5.3476 3.5704 4.6325 13 6 7.4566 3.8807 4.0370 14 6 7.4142 5.1766 4.8638 15 1 7.2283 5.0116 5.9251 16 7 8.5507 6.0675 4.6171 17 6 9.5274 6.1847 5.5385 18 8 9.4680 5.5489 6.5695 19 6 10.6934 7.1059 5.2875 20 16 11.8263 7.0433 6.6978 21 6 13.0581 8.1783 6.1513 22 1 12.9564 8.6656 5.1928 23 6 14.1589 8.4470 6.9531 24 7 14.2826 7.8535 8.1215 25 14 15.4653 9.6498 6.3734 26 1 14.8482 10.9825 6.1529 27 1 16.5285 9.7606 7.4042 28 1 16.0579 9.1623 5.1021 29 6 6.1528 5.5527 4.0686 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4025 -0.9314 35 1 3.0446 0.5746 1.7355 36 1 6.4169 1.2971 3.2138 37 1 5.1800 0.3327 2.3718 38 1 6.2827 1.3745 1.4408 39 1 4.9035 4.4528 2.1158 40 1 8.0237 3.9721 3.1107 41 1 7.7324 3.0008 4.6182 42 1 8.5983 6.5761 3.7926 43 1 11.2184 6.7902 4.3860 44 1 10.3298 8.1253 5.1580 45 1 15.0520 8.0411 8.6815 46 1 5.3775 6.0207 4.6754 47 1 6.3628 6.1021 3.1510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266668101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:01 Heat of formation + Delta-G solvation = -61.383614 kcal Electronic energy + Delta-G solvation = -25817.618623 eV Core-core repulsion = 21933.488436 eV Total energy + Delta-G solvation = -3884.130186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31366 -40.81565 -39.36885 -36.92489 -36.08062 -34.58029 -34.29792 -33.61799 -31.02847 -30.03213 -27.66528 -27.42418 -26.60609 -25.18338 -23.50556 -21.71484 -21.50223 -20.94212 -20.53105 -19.74644 -18.29252 -17.89055 -17.68051 -17.19223 -16.86908 -16.73047 -16.51341 -16.28566 -16.24773 -15.89018 -15.25886 -14.99967 -14.81353 -14.53733 -14.41778 -14.13116 -13.80382 -13.52066 -13.38080 -13.25620 -13.20310 -13.16111 -13.10818 -12.86248 -12.64194 -12.61176 -12.17017 -12.07385 -11.92460 -11.69974 -11.52430 -11.12090 -11.02383 -10.85568 -10.51709 -10.27201 -10.08118 -9.99462 -9.46375 -8.65455 -8.33697 -6.11711 1.15546 1.28226 1.44492 1.47669 1.53782 1.57927 1.62841 2.22578 2.28354 2.37711 3.00330 3.18111 3.34572 3.54512 3.58372 3.71046 3.85468 3.96006 3.97007 4.05614 4.13799 4.17489 4.22747 4.32439 4.51525 4.52648 4.55068 4.71824 4.76913 4.82223 4.85556 4.91094 4.99211 5.05667 5.09671 5.19468 5.30446 5.35034 5.42380 5.61638 5.63802 5.75906 6.03284 6.20478 6.31866 6.51360 6.55991 7.07506 7.16292 7.28306 8.75369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041033 B = 0.001419 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.220450 B =19727.259562 C =19886.050205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.145 3.855 4 N -0.713 5.713 5 C 0.511 3.489 6 O -0.575 6.575 7 C 0.069 3.931 8 H 0.093 0.907 9 C -0.133 4.133 10 N -0.667 5.667 11 C 0.075 3.925 12 H 0.093 0.907 13 C -0.133 4.133 14 C 0.114 3.886 15 H 0.096 0.904 16 N -0.701 5.701 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.131 4.131 20 S -0.149 6.149 21 C -0.549 4.549 22 H 0.082 0.918 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.134 4.134 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.417 0.583 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.353 0.647 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.039 -15.943 -17.141 37.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.365 5.365 5 C 0.297 3.703 6 O -0.455 6.455 7 C -0.044 4.044 8 H 0.111 0.889 9 C -0.191 4.191 10 N -0.303 5.303 11 C -0.035 4.035 12 H 0.111 0.889 13 C -0.173 4.173 14 C 0.008 3.992 15 H 0.114 0.886 16 N -0.354 5.354 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.283 4.283 20 S 0.078 5.922 21 C -0.697 4.697 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.173 4.173 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.175 0.825 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.252 0.748 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.538 -16.632 -16.042 36.720 hybrid contribution 0.302 1.518 -0.917 1.799 sum -28.236 -15.114 -16.959 36.240 Atomic orbital electron populations 1.24174 0.95751 1.03202 0.96761 1.22947 0.96320 0.97457 1.03237 1.20407 0.91529 0.96571 0.89284 1.45889 1.39959 1.19833 1.30867 1.21052 0.80574 0.82122 0.86515 1.90694 1.69157 1.37134 1.48467 1.21659 0.93579 0.93356 0.95807 0.88922 1.21758 0.98817 0.95616 1.02958 1.60480 1.43935 1.04635 1.21218 1.22849 0.95525 0.95563 0.89610 0.88949 1.23574 0.96784 0.97040 0.99918 1.22415 0.85710 0.91104 0.99973 0.88613 1.45742 1.21756 1.46584 1.21316 1.20068 0.83290 0.81400 0.83170 1.90676 1.78183 1.47267 1.28303 1.23395 0.97912 1.02701 1.04258 1.85529 1.22456 1.59644 1.24598 1.23188 1.09122 1.29620 1.07761 0.90006 1.26108 1.00080 0.98294 0.94477 1.70174 1.30501 1.42809 1.11275 0.85022 0.76778 0.78100 0.78207 1.18671 1.20300 1.18712 1.23558 0.96332 0.96521 1.00860 0.86335 0.88315 0.85205 0.92045 0.91780 0.74601 0.91286 0.89740 0.93055 0.82455 0.89429 0.91802 0.74783 0.87414 0.87309 0.91973 0.89494 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 14.32 67.79 0.97 0.28 16 2 C -0.18 -0.94 9.63 25.66 0.25 -0.69 16 3 C 0.15 1.44 6.11 85.63 0.52 1.96 16 4 N -0.71 -6.54 5.44 -466.79 -2.54 -9.08 16 5 C 0.51 7.77 7.18 87.65 0.63 8.40 16 6 O -0.58 -13.78 15.65 -3.01 -0.05 -13.83 16 7 C 0.07 0.81 3.02 44.17 0.13 0.94 16 8 H 0.09 0.72 7.46 -2.38 -0.02 0.70 16 9 C -0.13 -1.36 9.31 71.98 0.67 -0.68 16 10 N -0.67 -10.26 6.25 -470.30 -2.94 -13.20 16 11 C 0.07 1.07 3.96 45.50 0.18 1.25 16 12 H 0.09 1.09 7.47 -2.39 -0.02 1.08 16 13 C -0.13 -2.57 7.70 31.18 0.24 -2.33 16 14 C 0.11 2.49 4.22 45.52 0.19 2.69 16 15 H 0.10 2.51 7.50 -2.39 -0.02 2.49 16 16 N -0.70 -18.03 5.36 -440.03 -2.36 -20.39 16 17 C 0.53 19.98 7.85 87.66 0.69 20.67 16 18 O -0.57 -26.34 15.48 -3.04 -0.05 -26.38 16 19 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 20 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 21 C -0.55 -31.73 9.50 67.96 0.65 -31.09 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.02 0.88 5.49 84.86 0.47 1.34 16 24 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 25 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 29 C -0.13 -2.00 7.40 31.12 0.23 -1.77 16 30 H 0.12 0.19 8.06 -2.91 -0.02 0.17 16 31 H 0.10 0.45 7.84 -2.91 -0.02 0.43 16 32 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 33 H 0.06 0.74 7.79 -2.39 -0.02 0.72 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 1.37 7.88 -92.71 -0.73 0.64 16 36 H 0.07 0.77 8.07 -2.38 -0.02 0.76 16 37 H 0.08 0.39 7.56 -2.39 -0.02 0.38 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.35 6.12 7.26 -89.69 -0.65 5.47 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.42 8.08 8.71 -92.71 -0.81 7.28 16 43 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 45 H 0.27 15.59 8.31 -92.72 -0.77 14.82 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16 Total: -1.00 -81.89 409.58 -1.72 -83.62 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -1.20 Total: 22.86 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 6.25 Total: -3.90 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -7.55 Total: -98.75 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.09 Total: -40.21 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -81.89 -1.72 -83.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266668101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.232 kcal (2) G-P(sol) polarization free energy of solvation -81.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds