Wall clock time and date at job start Wed Apr 1 2020 01:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47045 * 2 1 4 4 C 1.46899 * 111.00316 * 291.25763 * 3 2 1 5 5 C 1.53004 * 109.47326 * 160.22442 * 4 3 2 6 6 N 1.46502 * 109.47148 * 184.90939 * 5 4 3 7 7 C 1.34778 * 119.99684 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00308 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99655 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.46745 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99874 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00149 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00207 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00139 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47122 * 90.00108 * 15 13 11 17 17 H 1.48493 * 109.47490 * 210.00054 * 15 13 11 18 18 H 1.48497 * 109.47153 * 330.00542 * 15 13 11 19 19 C 1.46905 * 111.00027 * 167.30563 * 3 2 1 20 20 C 1.50697 * 109.47254 * 293.95372 * 19 3 2 21 21 O 1.34747 * 126.44704 * 270.02310 * 20 19 3 22 22 C 1.33963 * 107.76003 * 179.73482 * 21 20 19 23 23 C 1.50698 * 125.62286 * 179.97438 * 22 21 20 24 24 N 1.30263 * 108.75932 * 0.02562 * 22 21 20 25 25 C 1.34332 * 126.44111 * 89.70746 * 20 19 3 26 26 C 1.50701 * 126.16683 * 0.25170 * 25 20 19 27 27 H 1.09000 * 109.47314 * 178.78225 * 1 2 3 28 28 H 1.09002 * 109.47093 * 298.78586 * 1 2 3 29 29 H 1.09006 * 109.47168 * 58.78386 * 1 2 3 30 30 H 1.09005 * 109.47168 * 240.00397 * 2 1 3 31 31 H 1.08997 * 109.47335 * 119.99742 * 2 1 3 32 32 H 1.09000 * 109.47437 * 280.22644 * 4 3 2 33 33 H 1.09010 * 109.46911 * 40.22874 * 4 3 2 34 34 H 1.09006 * 109.46791 * 304.90723 * 5 4 3 35 35 H 1.09003 * 109.47214 * 64.90553 * 5 4 3 36 36 H 0.96992 * 119.99970 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.46709 * 299.99985 * 9 7 6 38 38 H 1.08998 * 109.47191 * 60.00121 * 9 7 6 39 39 H 0.96997 * 120.00036 * 179.97438 * 14 13 11 40 40 H 1.09001 * 109.47274 * 173.95284 * 19 3 2 41 41 H 1.08999 * 109.47104 * 53.95747 * 19 3 2 42 42 H 1.09002 * 109.47304 * 89.99890 * 23 22 21 43 43 H 1.08996 * 109.47557 * 209.99943 * 23 22 21 44 44 H 1.09000 * 109.47182 * 330.00473 * 23 22 21 45 45 H 1.08995 * 109.47591 * 89.99159 * 26 25 20 46 46 H 1.08999 * 109.46916 * 209.99757 * 26 25 20 47 47 H 1.09002 * 109.46610 * 329.98956 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7263 2.0471 -1.2781 5 6 1.7844 3.5646 -1.0915 6 7 1.3780 4.2254 -2.3343 7 6 1.3530 5.5711 -2.4049 8 8 1.6665 6.2350 -1.4396 9 6 0.9354 6.2507 -3.6836 10 16 1.0040 8.0459 -3.4627 11 6 0.4832 8.5710 -5.0619 12 1 0.2384 7.8392 -5.8175 13 6 0.3864 9.9253 -5.3503 14 7 0.6842 10.8173 -4.4293 15 14 -0.1665 10.4820 -7.0456 16 1 -1.6444 10.6267 -7.0616 17 1 0.4622 11.7883 -7.3671 18 1 0.2430 9.4735 -8.0558 19 6 3.4565 1.4354 0.3014 20 6 3.6895 0.9728 1.7165 21 8 3.7034 1.7465 2.8196 22 6 3.9373 0.9524 3.8728 23 6 4.0359 1.4034 5.3074 24 7 4.0667 -0.2737 3.4525 25 6 3.9166 -0.2895 2.1162 26 6 3.9902 -1.5042 1.2274 27 1 -0.3634 -1.0274 -0.0218 28 1 -0.3633 0.4949 0.9007 29 1 -0.3634 0.5326 -0.8789 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.4633 1.7441 -2.0219 33 1 0.7303 1.7604 -1.6156 34 1 1.1100 3.8578 -0.2868 35 1 2.8024 3.8609 -0.8385 36 1 1.1276 3.6944 -3.1063 37 1 1.6098 5.9572 -4.4880 38 1 -0.0826 5.9548 -3.9367 39 1 0.6169 11.7637 -4.6310 40 1 3.8155 2.4585 0.1898 41 1 3.9952 0.7843 -0.3871 42 1 3.0488 1.3670 5.7684 43 1 4.7145 0.7449 5.8495 44 1 4.4155 2.4245 5.3420 45 1 5.0186 -1.6516 0.8979 46 1 3.6571 -2.3812 1.7824 47 1 3.3478 -1.3583 0.3589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267235416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:50 Heat of formation + Delta-G solvation = -13.006707 kcal Electronic energy + Delta-G solvation = -26610.460582 eV Core-core repulsion = 22728.428175 eV Total energy + Delta-G solvation = -3882.032406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.65581 -39.38453 -38.46158 -35.48677 -34.67491 -33.32845 -32.42999 -31.68830 -30.49827 -29.70932 -28.64790 -26.91474 -25.47703 -24.46482 -23.14892 -22.02121 -21.55694 -20.61643 -20.24736 -17.87431 -17.30555 -17.18690 -16.33568 -16.28368 -15.97301 -15.41041 -15.24378 -14.99599 -14.80530 -14.46625 -14.36942 -13.93810 -13.80764 -13.68672 -13.59778 -13.37535 -13.11550 -13.06211 -12.92478 -12.56953 -12.47129 -12.30067 -12.10054 -11.96210 -11.75066 -11.39804 -11.17746 -11.10112 -11.06256 -11.02561 -10.77410 -10.75588 -9.81973 -9.42073 -9.07258 -9.03053 -8.88660 -8.73698 -8.23470 -6.50059 -6.21710 -3.92314 1.09118 2.27162 2.36535 2.94040 3.10498 3.22076 3.24601 3.29643 3.47288 3.65405 3.87677 4.20217 4.29451 4.42384 4.47543 4.58945 4.65953 4.76135 4.86538 4.94307 4.99475 5.00372 5.06508 5.13323 5.13490 5.15064 5.18780 5.20819 5.31786 5.35482 5.42362 5.58398 5.61701 5.67265 5.71840 5.76629 5.87725 5.89160 5.94307 6.03555 6.13252 6.44753 6.53059 6.64213 7.45271 7.59303 7.69028 8.35008 8.61469 9.23491 10.85694 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.001787 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.761968 B =15665.814336 C =16527.228796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 N -0.532 5.532 4 C 0.043 3.957 5 C 0.125 3.875 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.134 3.866 20 C -0.034 4.034 21 O -0.189 6.189 22 C 0.192 3.808 23 C -0.058 4.058 24 N -0.485 5.485 25 C -0.010 4.010 26 C -0.081 4.081 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -27.624 11.847 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 N -0.257 5.257 4 C -0.085 4.085 5 C 0.000 4.000 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.007 3.993 20 C -0.087 4.087 21 O -0.075 6.075 22 C -0.015 4.015 23 C -0.115 4.115 24 N -0.215 5.215 25 C -0.131 4.131 26 C -0.138 4.138 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.433 -26.515 14.290 30.607 hybrid contribution -0.544 -0.515 -3.569 3.647 sum 4.889 -27.030 10.720 29.487 Atomic orbital electron populations 1.21821 0.94332 1.01691 1.02894 1.22449 0.96788 0.88239 1.01378 1.61779 1.13964 1.17251 1.32704 1.22331 1.02351 0.94196 0.89594 1.21168 1.01139 0.90145 0.87522 1.45909 1.71541 1.06843 1.15205 1.20292 0.76747 0.81283 0.89864 1.90713 1.46329 1.63924 1.37941 1.23527 1.04101 1.05525 0.97206 1.85420 1.88506 0.90235 1.19203 1.22867 1.52544 0.94641 0.98332 0.90928 1.24998 0.94934 0.95550 0.98149 1.70018 1.45376 1.01589 1.33272 0.86164 0.78797 0.78120 0.82388 1.20273 1.20753 1.19716 1.20486 0.89310 1.03307 0.86232 1.22859 1.07437 0.89729 0.88721 1.84425 1.68018 1.39745 1.15315 1.26243 0.99374 0.83988 0.91851 1.20269 1.04776 1.03183 0.83268 1.70346 1.19837 1.20873 1.10475 1.21466 1.05668 0.95176 0.90803 1.20359 1.02950 0.93451 0.97072 0.92090 0.91746 0.92316 0.94276 0.89646 0.93467 0.89256 0.90595 0.91832 0.76970 0.89240 0.89206 0.92179 0.88115 0.90952 0.88832 0.88189 0.89163 0.90687 0.90384 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.95 37.16 0.37 -0.66 16 2 C 0.04 0.27 4.23 -3.83 -0.02 0.26 16 3 N -0.53 -4.54 4.41 -236.06 -1.04 -5.58 16 4 C 0.04 0.34 4.96 -3.82 -0.02 0.32 16 5 C 0.12 1.45 5.71 -4.04 -0.02 1.43 16 6 N -0.74 -9.56 5.56 -60.29 -0.33 -9.90 16 7 C 0.53 9.89 7.85 -10.98 -0.09 9.81 16 8 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16 9 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.13 1.13 5.02 -4.97 -0.02 1.11 16 20 C -0.03 -0.35 6.32 -35.69 -0.23 -0.57 16 21 O -0.19 -2.22 10.77 5.39 0.06 -2.16 16 22 C 0.19 1.96 8.34 -12.94 -0.11 1.85 16 23 C -0.06 -0.32 10.51 36.00 0.38 0.05 16 24 N -0.48 -5.51 11.29 -7.36 -0.08 -5.59 16 25 C -0.01 -0.10 6.18 -82.81 -0.51 -0.61 16 26 C -0.08 -0.55 9.38 36.01 0.34 -0.21 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.39 6.33 -51.93 -0.33 0.06 16 30 H 0.04 0.22 7.75 -51.93 -0.40 -0.18 16 31 H 0.09 0.66 4.44 -51.93 -0.23 0.43 16 32 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 33 H 0.09 0.64 6.03 -51.92 -0.31 0.33 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 36 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.10 0.91 6.72 -51.93 -0.35 0.56 16 41 H 0.07 0.47 7.78 -51.93 -0.40 0.06 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.41 4.92 -51.93 -0.26 0.16 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -37.05 397.07 -8.52 -45.57 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.18 Total: -0.60 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 0.49 Total: -3.02 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.72 Total: -46.52 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.15 Total: -13.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.05 -8.52 -45.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267235416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.560 kcal (2) G-P(sol) polarization free energy of solvation -37.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds