Wall clock time and date at job start Wed Apr 1 2020 01:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47045 * 2 1 4 4 C 1.46899 * 111.00316 * 291.25763 * 3 2 1 5 5 C 1.53004 * 109.47326 * 160.22442 * 4 3 2 6 6 N 1.46502 * 109.47148 * 184.90939 * 5 4 3 7 7 C 1.34778 * 119.99684 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00308 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99655 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.46745 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99874 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00149 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00207 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00139 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47122 * 90.00108 * 15 13 11 17 17 H 1.48493 * 109.47490 * 210.00054 * 15 13 11 18 18 H 1.48497 * 109.47153 * 330.00542 * 15 13 11 19 19 C 1.46905 * 111.00027 * 167.30563 * 3 2 1 20 20 C 1.50697 * 109.47254 * 293.95372 * 19 3 2 21 21 O 1.34747 * 126.44704 * 270.02310 * 20 19 3 22 22 C 1.33963 * 107.76003 * 179.73482 * 21 20 19 23 23 C 1.50698 * 125.62286 * 179.97438 * 22 21 20 24 24 N 1.30263 * 108.75932 * 0.02562 * 22 21 20 25 25 C 1.34332 * 126.44111 * 89.70746 * 20 19 3 26 26 C 1.50701 * 126.16683 * 0.25170 * 25 20 19 27 27 H 1.09000 * 109.47314 * 178.78225 * 1 2 3 28 28 H 1.09002 * 109.47093 * 298.78586 * 1 2 3 29 29 H 1.09006 * 109.47168 * 58.78386 * 1 2 3 30 30 H 1.09005 * 109.47168 * 240.00397 * 2 1 3 31 31 H 1.08997 * 109.47335 * 119.99742 * 2 1 3 32 32 H 1.09000 * 109.47437 * 280.22644 * 4 3 2 33 33 H 1.09010 * 109.46911 * 40.22874 * 4 3 2 34 34 H 1.09006 * 109.46791 * 304.90723 * 5 4 3 35 35 H 1.09003 * 109.47214 * 64.90553 * 5 4 3 36 36 H 0.96992 * 119.99970 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.46709 * 299.99985 * 9 7 6 38 38 H 1.08998 * 109.47191 * 60.00121 * 9 7 6 39 39 H 0.96997 * 120.00036 * 179.97438 * 14 13 11 40 40 H 1.09001 * 109.47274 * 173.95284 * 19 3 2 41 41 H 1.08999 * 109.47104 * 53.95747 * 19 3 2 42 42 H 1.09002 * 109.47304 * 89.99890 * 23 22 21 43 43 H 1.08996 * 109.47557 * 209.99943 * 23 22 21 44 44 H 1.09000 * 109.47182 * 330.00473 * 23 22 21 45 45 H 1.08995 * 109.47591 * 89.99159 * 26 25 20 46 46 H 1.08999 * 109.46916 * 209.99757 * 26 25 20 47 47 H 1.09002 * 109.46610 * 329.98956 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7263 2.0471 -1.2781 5 6 1.7844 3.5646 -1.0915 6 7 1.3780 4.2254 -2.3343 7 6 1.3530 5.5711 -2.4049 8 8 1.6665 6.2350 -1.4396 9 6 0.9354 6.2507 -3.6836 10 16 1.0040 8.0459 -3.4627 11 6 0.4832 8.5710 -5.0619 12 1 0.2384 7.8392 -5.8175 13 6 0.3864 9.9253 -5.3503 14 7 0.6842 10.8173 -4.4293 15 14 -0.1665 10.4820 -7.0456 16 1 -1.6444 10.6267 -7.0616 17 1 0.4622 11.7883 -7.3671 18 1 0.2430 9.4735 -8.0558 19 6 3.4565 1.4354 0.3014 20 6 3.6895 0.9728 1.7165 21 8 3.7034 1.7465 2.8196 22 6 3.9373 0.9524 3.8728 23 6 4.0359 1.4034 5.3074 24 7 4.0667 -0.2737 3.4525 25 6 3.9166 -0.2895 2.1162 26 6 3.9902 -1.5042 1.2274 27 1 -0.3634 -1.0274 -0.0218 28 1 -0.3633 0.4949 0.9007 29 1 -0.3634 0.5326 -0.8789 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.4633 1.7441 -2.0219 33 1 0.7303 1.7604 -1.6156 34 1 1.1100 3.8578 -0.2868 35 1 2.8024 3.8609 -0.8385 36 1 1.1276 3.6944 -3.1063 37 1 1.6098 5.9572 -4.4880 38 1 -0.0826 5.9548 -3.9367 39 1 0.6169 11.7637 -4.6310 40 1 3.8155 2.4585 0.1898 41 1 3.9952 0.7843 -0.3871 42 1 3.0488 1.3670 5.7684 43 1 4.7145 0.7449 5.8495 44 1 4.4155 2.4245 5.3420 45 1 5.0186 -1.6516 0.8979 46 1 3.6571 -2.3812 1.7824 47 1 3.3478 -1.3583 0.3589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267235416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:50 Heat of formation + Delta-G solvation = -42.669802 kcal Electronic energy + Delta-G solvation = -26611.746870 eV Core-core repulsion = 22728.428175 eV Total energy + Delta-G solvation = -3883.318695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.39851 -40.67783 -39.29095 -36.28008 -35.83871 -34.57820 -33.99229 -32.43471 -31.52130 -30.43224 -29.61381 -27.85382 -27.51177 -25.12583 -23.93118 -22.76297 -22.29081 -21.76343 -21.15183 -19.82967 -18.10458 -17.96890 -17.71496 -17.35734 -16.87366 -16.85145 -16.37582 -16.19368 -15.99067 -15.54747 -15.22773 -15.00248 -14.74943 -14.65716 -14.32609 -14.27254 -14.18591 -13.86365 -13.62259 -13.51159 -13.47868 -13.15938 -13.04505 -12.94495 -12.87706 -12.66904 -12.60138 -12.44274 -12.17903 -11.90091 -11.73425 -11.68959 -11.52889 -11.13767 -10.98805 -10.26482 -10.13099 -9.67977 -9.36430 -8.66440 -8.33997 -6.12266 0.36014 1.26957 1.43144 1.47028 1.54827 1.58529 1.61575 1.70605 2.18239 2.28297 2.95650 3.00125 3.06182 3.34172 3.63924 3.77721 3.82032 3.94517 3.98957 4.07128 4.13439 4.29503 4.32483 4.39665 4.45035 4.49666 4.52242 4.58308 4.60353 4.61867 4.68605 4.76373 4.79692 4.85801 4.87962 4.99522 5.05469 5.10534 5.16604 5.32002 5.40707 5.41212 5.42647 5.87961 5.96360 6.20515 6.51261 6.71421 7.07209 7.25523 8.75211 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.001787 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.761968 B =15665.814336 C =16527.228796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 N -0.549 5.549 4 C 0.055 3.945 5 C 0.127 3.873 6 N -0.710 5.710 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.156 6.156 11 C -0.545 4.545 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.257 1.257 19 C 0.137 3.863 20 C -0.052 4.052 21 O -0.213 6.213 22 C 0.184 3.816 23 C -0.058 4.058 24 N -0.512 5.512 25 C -0.017 4.017 26 C -0.079 4.079 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.419 0.581 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -30.172 9.675 32.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 N -0.275 5.275 4 C -0.072 4.072 5 C 0.003 3.997 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.071 5.929 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.181 1.181 19 C 0.010 3.990 20 C -0.105 4.105 21 O -0.100 6.100 22 C -0.023 4.023 23 C -0.115 4.115 24 N -0.244 5.244 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.256 0.744 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.119 0.881 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.007 -29.143 12.095 31.948 hybrid contribution -0.400 0.145 -2.783 2.815 sum 4.607 -28.998 9.312 30.803 Atomic orbital electron populations 1.21818 0.94329 1.02430 1.02025 1.22458 0.96698 0.87330 1.02066 1.61665 1.14186 1.18487 1.33191 1.22212 1.04009 0.90972 0.90016 1.21209 0.99749 0.92786 0.85972 1.45574 1.69374 1.04963 1.16536 1.20096 0.76524 0.82868 0.88628 1.90705 1.49025 1.65499 1.39376 1.23361 1.06118 0.99671 0.98743 1.85638 1.88963 0.97663 1.20625 1.23207 1.52375 0.95367 0.98306 0.89739 1.26155 0.94743 0.95612 1.02822 1.70190 1.46749 1.02003 1.35901 0.84936 0.78470 0.77786 0.76674 1.19344 1.20401 1.18061 1.20540 0.89599 1.03139 0.85747 1.23272 1.08152 0.89951 0.89150 1.84421 1.68567 1.40805 1.16237 1.27147 0.98337 0.83833 0.92972 1.20502 1.05927 1.04021 0.80999 1.70372 1.21050 1.21520 1.11427 1.21984 1.04814 0.96150 0.90755 1.20466 1.04015 0.92033 0.97032 0.90653 0.93828 0.91853 0.91894 0.90469 0.91026 0.87788 0.92965 0.92917 0.74407 0.86923 0.87007 0.92032 0.89315 0.88472 0.87550 0.86873 0.88070 0.89628 0.90301 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.95 71.98 0.72 -1.02 16 2 C 0.04 0.48 4.23 86.30 0.36 0.84 16 3 N -0.55 -8.43 4.41 -900.77 -3.97 -12.40 16 4 C 0.06 0.73 4.96 86.30 0.43 1.16 16 5 C 0.13 2.83 5.71 86.38 0.49 3.32 16 6 N -0.71 -16.90 5.56 -463.03 -2.57 -19.47 16 7 C 0.53 19.48 7.85 87.66 0.69 20.17 16 8 O -0.57 -26.79 15.86 -3.03 -0.05 -26.84 16 9 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 10 S -0.16 -8.67 20.57 -56.49 -1.16 -9.84 16 11 C -0.54 -30.95 9.50 67.95 0.65 -30.30 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.64 5.49 84.86 0.47 1.11 16 14 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 15 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 C 0.14 2.15 5.02 85.56 0.43 2.58 16 20 C -0.05 -1.07 6.32 24.79 0.16 -0.92 16 21 O -0.21 -5.16 10.77 -3.64 -0.04 -5.20 16 22 C 0.18 3.80 8.34 88.34 0.74 4.54 16 23 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 24 N -0.51 -11.64 11.29 -291.98 -3.30 -14.94 16 25 C -0.02 -0.33 6.18 41.26 0.25 -0.07 16 26 C -0.08 -0.92 9.38 71.24 0.67 -0.25 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.67 6.33 -2.38 -0.02 0.66 16 30 H 0.06 0.45 7.75 -2.38 -0.02 0.44 16 31 H 0.08 1.06 4.44 -2.39 -0.01 1.05 16 32 H 0.07 0.65 8.00 -2.39 -0.02 0.64 16 33 H 0.10 1.11 6.03 -2.38 -0.01 1.10 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.05 1.32 6.95 -2.39 -0.02 1.30 16 36 H 0.42 6.48 8.47 -92.71 -0.79 5.70 16 37 H 0.11 3.85 8.14 -2.40 -0.02 3.84 16 38 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.09 1.58 6.72 -2.39 -0.02 1.57 16 41 H 0.10 0.99 7.78 -2.39 -0.02 0.98 16 42 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.09 0.74 4.92 -2.39 -0.01 0.73 16 Total: -1.00 -84.42 397.07 -1.33 -85.75 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.21 Total: 16.64 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 7.23 Total: -3.23 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -9.55 Total: -102.71 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.09 Total: -32.04 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -84.42 -1.33 -85.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267235416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.084 kcal (2) G-P(sol) polarization free energy of solvation -84.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds