Wall clock time and date at job start Wed Apr 1 2020 00:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81392 * 102.99928 * 2 1 4 4 H 1.09003 * 109.47290 * 304.99857 * 3 2 1 5 5 C 1.53001 * 109.47547 * 65.00199 * 3 2 1 6 6 C 1.50699 * 109.47202 * 185.00228 * 3 2 1 7 7 O 1.21279 * 119.99888 * 340.00130 * 6 3 2 8 8 N 1.34772 * 120.00298 * 159.99726 * 6 3 2 9 9 C 1.47153 * 120.68219 * 0.02562 * 8 6 3 10 10 C 1.53895 * 108.04691 * 132.61228 * 9 8 6 11 11 H 1.09003 * 112.61359 * 182.32104 * 10 9 8 12 12 C 1.54544 * 107.80913 * 306.64493 * 10 9 8 13 13 C 1.54257 * 105.02947 * 88.90555 * 12 10 9 14 14 C 1.54780 * 104.82952 * 0.08864 * 13 12 10 15 15 H 1.08996 * 112.72588 * 146.70338 * 14 13 12 16 16 C 1.47152 * 120.68463 * 180.02562 * 8 6 3 17 17 N 1.48732 * 104.36025 * 24.65957 * 14 13 12 18 18 C 1.46894 * 111.00078 * 78.40527 * 17 14 13 19 19 C 1.50698 * 109.47202 * 75.20636 * 18 17 14 20 20 O 1.21287 * 120.00214 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99870 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99758 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00251 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99948 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00161 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99978 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47301 * 60.00306 * 26 24 22 28 28 H 1.48504 * 109.47022 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47121 * 300.00124 * 26 24 22 30 30 H 1.08998 * 109.47053 * 299.99912 * 1 2 3 31 31 H 1.08995 * 109.47119 * 60.00034 * 1 2 3 32 32 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.46607 * 299.99950 * 5 3 2 34 34 H 1.08993 * 109.47169 * 59.99425 * 5 3 2 35 35 H 1.08995 * 109.47187 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.74816 * 12.97485 * 9 8 6 37 37 H 1.09007 * 109.74750 * 252.24703 * 9 8 6 38 38 H 1.09002 * 110.34814 * 207.82735 * 12 10 9 39 39 H 1.09003 * 110.34576 * 329.98937 * 12 10 9 40 40 H 1.09009 * 110.34490 * 118.92683 * 13 12 10 41 41 H 1.08997 * 110.34920 * 241.18723 * 13 12 10 42 42 H 1.08997 * 109.75020 * 107.75467 * 16 8 6 43 43 H 1.08994 * 109.74707 * 347.02517 * 16 8 6 44 44 H 1.09003 * 109.47337 * 195.20436 * 18 17 14 45 45 H 1.09002 * 109.47254 * 315.20299 * 18 17 14 46 46 H 0.96998 * 120.00289 * 359.97438 * 21 19 18 47 47 H 0.96995 * 119.99965 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7429 2.4016 1.3073 6 6 3.7142 1.9385 -0.1239 7 8 4.4552 1.0199 0.1554 8 7 4.2253 3.1123 -0.5451 9 6 3.3402 4.2369 -0.8875 10 6 3.8892 5.5012 -0.2029 11 1 3.2631 6.3767 -0.3754 12 6 4.0559 5.1895 1.3015 13 6 5.4809 4.6142 1.4354 14 6 6.0517 4.6313 -0.0032 15 1 7.1253 4.8177 -0.0281 16 6 5.6798 3.2956 -0.6721 17 7 5.2792 5.6981 -0.6940 18 6 5.7817 7.0302 -0.3320 19 6 7.0827 7.2878 -1.0475 20 8 7.5461 6.4445 -1.7859 21 7 7.7320 8.4549 -0.8660 22 6 8.9159 8.6891 -1.5165 23 1 9.3280 7.9385 -2.1747 24 6 9.5849 9.8925 -1.3299 25 7 9.0832 10.8060 -0.5295 26 14 11.1977 10.2118 -2.2168 27 1 10.9769 10.1480 -3.6839 28 1 11.7059 11.5582 -1.8504 29 1 12.1925 9.1830 -1.8207 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.6636 2.2778 1.3969 34 1 2.2354 1.9150 2.1491 35 1 1.9877 3.4637 1.3071 36 1 2.3309 4.0334 -0.5300 37 1 3.3271 4.3795 -1.9682 38 1 3.9584 6.1014 1.8906 39 1 3.3183 4.4528 1.6199 40 1 6.0837 5.2435 2.0904 41 1 5.4435 3.5942 1.8178 42 1 5.9572 3.3214 -1.7259 43 1 6.1990 2.4770 -0.1739 44 1 5.0514 7.7854 -0.6228 45 1 5.9437 7.0772 0.7448 46 1 7.3616 9.1292 -0.2752 47 1 9.5505 11.6459 -0.3990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267389303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:09 Heat of formation + Delta-G solvation = -42.806470 kcal Electronic energy + Delta-G solvation = -28737.374802 eV Core-core repulsion = 24854.050181 eV Total energy + Delta-G solvation = -3883.324621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24030 -39.10664 -37.77633 -34.88308 -33.90978 -33.61925 -31.45912 -31.33864 -31.00199 -29.17763 -27.95263 -26.04058 -25.21946 -24.36601 -23.64357 -20.75071 -20.67586 -19.34806 -18.62530 -17.93320 -17.56482 -16.90582 -16.31877 -15.80070 -15.73597 -15.07696 -14.87436 -14.66131 -14.59553 -14.35727 -14.06392 -13.88826 -13.85254 -13.63552 -13.47648 -13.27845 -12.94406 -12.69515 -12.47544 -12.28998 -12.21958 -12.07648 -11.91092 -11.59771 -11.41257 -11.17964 -11.00562 -10.88778 -10.84799 -10.48661 -10.45185 -10.22347 -10.13735 -9.89689 -9.49466 -8.92845 -8.46843 -8.11603 -7.97092 -7.95355 -6.42708 -3.83493 1.15211 2.18678 2.46062 2.85300 3.19375 3.25134 3.29441 3.79591 3.90788 4.07640 4.19847 4.43391 4.50764 4.57323 4.63399 4.74717 4.78223 4.79618 4.91427 4.95361 5.00750 5.10713 5.14299 5.23607 5.27208 5.35422 5.41613 5.46354 5.55822 5.64145 5.68755 5.79133 5.79864 5.86392 5.89211 5.96230 6.10819 6.17796 6.25103 6.44618 6.94111 7.07732 7.28867 7.54043 7.98240 8.04878 8.60589 9.17235 9.53395 10.05178 10.74960 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.002312 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.618498 B =12107.785780 C =12437.274625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.188 6.188 3 C -0.094 4.094 4 H 0.108 0.892 5 C -0.149 4.149 6 C 0.535 3.465 7 O -0.524 6.524 8 N -0.597 5.597 9 C 0.117 3.883 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.060 3.940 15 H 0.116 0.884 16 C 0.130 3.870 17 N -0.475 5.475 18 C 0.036 3.964 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.391 0.609 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.836 -12.666 5.207 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.037 5.963 3 C -0.225 4.225 4 H 0.126 0.874 5 C -0.207 4.207 6 C 0.320 3.680 7 O -0.400 6.400 8 N -0.331 5.331 9 C -0.006 4.006 10 C -0.065 4.065 11 H 0.124 0.876 12 C -0.189 4.189 13 C -0.188 4.188 14 C -0.049 4.049 15 H 0.134 0.866 16 C 0.008 3.992 17 N -0.197 5.197 18 C -0.096 4.096 19 C 0.229 3.771 20 O -0.460 6.460 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.310 -14.440 4.278 23.708 hybrid contribution -0.438 2.109 0.842 2.313 sum -18.748 -12.330 5.120 23.016 Atomic orbital electron populations 1.23552 0.95843 1.06644 1.04871 1.87488 1.04647 1.06273 1.97842 1.23364 0.97743 0.98157 1.03281 0.87431 1.22179 1.01916 1.01490 0.95161 1.19553 0.88593 0.82537 0.77312 1.90736 1.60307 1.39657 1.49280 1.48027 1.07911 1.11843 1.65282 1.22031 0.92620 0.85065 1.00908 1.23510 0.92900 0.97569 0.92564 0.87583 1.22983 0.97667 1.01003 0.97282 1.22914 0.95762 1.01557 0.98540 1.23474 1.00073 0.91271 0.90124 0.86622 1.21877 0.78502 0.96755 1.02106 1.65052 1.00286 1.01907 1.52500 1.21976 0.97697 0.91437 0.98481 1.19699 0.86661 0.84047 0.86643 1.90523 1.68708 1.45811 1.40982 1.41861 1.21270 1.14992 1.42108 1.19635 0.97609 1.01610 1.23904 0.87990 1.25251 0.99860 0.95483 0.97357 1.69600 1.40160 1.07596 1.37061 0.85929 0.81380 0.77346 0.79641 1.19897 1.21014 1.19926 0.90419 0.90536 0.87830 0.91242 0.90512 0.90565 0.89857 0.90005 0.91449 0.91141 0.91491 0.91138 0.89989 0.88993 0.89412 0.92920 0.77572 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 10.45 101.05 1.06 0.23 16 2 S -0.19 -1.95 21.04 -107.50 -2.26 -4.21 16 3 C -0.09 -0.86 2.32 -27.88 -0.06 -0.92 16 4 H 0.11 0.79 6.94 -51.92 -0.36 0.43 16 5 C -0.15 -1.04 8.76 37.16 0.33 -0.72 16 6 C 0.53 6.77 6.88 -10.99 -0.08 6.70 16 7 O -0.52 -8.69 15.51 5.56 0.09 -8.61 16 8 N -0.60 -7.12 2.24 -171.52 -0.38 -7.51 16 9 C 0.12 1.12 5.40 -3.22 -0.02 1.10 16 10 C 0.04 0.47 3.67 -65.42 -0.24 0.23 16 11 H 0.11 0.95 7.97 -51.93 -0.41 0.54 16 12 C -0.15 -1.51 5.68 -25.26 -0.14 -1.65 16 13 C -0.15 -1.84 5.48 -25.14 -0.14 -1.98 16 14 C 0.06 0.89 3.23 -65.27 -0.21 0.68 16 15 H 0.12 2.05 7.01 -51.93 -0.36 1.69 16 16 C 0.13 1.84 5.90 -3.20 -0.02 1.82 16 17 N -0.48 -7.09 4.56 -214.03 -0.98 -8.06 16 18 C 0.04 0.59 5.15 -4.98 -0.03 0.56 16 19 C 0.44 10.04 7.44 -10.98 -0.08 9.96 16 20 O -0.58 -15.02 14.93 5.55 0.08 -14.93 16 21 N -0.57 -13.93 5.29 -10.96 -0.06 -13.99 16 22 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 26 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.08 0.37 7.14 -51.93 -0.37 0.00 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.36 6.92 -51.92 -0.36 0.00 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.48 4.15 -51.93 -0.22 0.26 16 36 H 0.08 0.55 4.72 -51.93 -0.25 0.31 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.62 5.17 -51.93 -0.27 0.35 16 40 H 0.07 0.85 7.94 -51.92 -0.41 0.44 16 41 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.35 7.10 -51.93 -0.37 0.98 16 44 H 0.09 1.29 7.96 -51.93 -0.41 0.88 16 45 H 0.05 0.81 6.98 -51.93 -0.36 0.44 16 46 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -32.86 373.07 -8.99 -41.85 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.93 Total: 9.29 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 0.13 Total: 8.18 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.69 Total: -53.08 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.26 Total: -4.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.86 -8.99 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267389303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.956 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds