Wall clock time and date at job start Wed Apr 1 2020 00:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81392 * 102.99928 * 2 1 4 4 H 1.09003 * 109.47290 * 304.99857 * 3 2 1 5 5 C 1.53001 * 109.47547 * 65.00199 * 3 2 1 6 6 C 1.50699 * 109.47202 * 185.00228 * 3 2 1 7 7 O 1.21279 * 119.99888 * 340.00130 * 6 3 2 8 8 N 1.34772 * 120.00298 * 159.99726 * 6 3 2 9 9 C 1.47153 * 120.68219 * 0.02562 * 8 6 3 10 10 C 1.53895 * 108.04691 * 132.61228 * 9 8 6 11 11 H 1.09003 * 112.61359 * 182.32104 * 10 9 8 12 12 C 1.54544 * 107.80913 * 306.64493 * 10 9 8 13 13 C 1.54257 * 105.02947 * 88.90555 * 12 10 9 14 14 C 1.54780 * 104.82952 * 0.08864 * 13 12 10 15 15 H 1.08996 * 112.72588 * 146.70338 * 14 13 12 16 16 C 1.47152 * 120.68463 * 180.02562 * 8 6 3 17 17 N 1.48732 * 104.36025 * 24.65957 * 14 13 12 18 18 C 1.46894 * 111.00078 * 78.40527 * 17 14 13 19 19 C 1.50698 * 109.47202 * 75.20636 * 18 17 14 20 20 O 1.21287 * 120.00214 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99870 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99758 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00251 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99948 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00161 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99978 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47301 * 60.00306 * 26 24 22 28 28 H 1.48504 * 109.47022 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47121 * 300.00124 * 26 24 22 30 30 H 1.08998 * 109.47053 * 299.99912 * 1 2 3 31 31 H 1.08995 * 109.47119 * 60.00034 * 1 2 3 32 32 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.46607 * 299.99950 * 5 3 2 34 34 H 1.08993 * 109.47169 * 59.99425 * 5 3 2 35 35 H 1.08995 * 109.47187 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.74816 * 12.97485 * 9 8 6 37 37 H 1.09007 * 109.74750 * 252.24703 * 9 8 6 38 38 H 1.09002 * 110.34814 * 207.82735 * 12 10 9 39 39 H 1.09003 * 110.34576 * 329.98937 * 12 10 9 40 40 H 1.09009 * 110.34490 * 118.92683 * 13 12 10 41 41 H 1.08997 * 110.34920 * 241.18723 * 13 12 10 42 42 H 1.08997 * 109.75020 * 107.75467 * 16 8 6 43 43 H 1.08994 * 109.74707 * 347.02517 * 16 8 6 44 44 H 1.09003 * 109.47337 * 195.20436 * 18 17 14 45 45 H 1.09002 * 109.47254 * 315.20299 * 18 17 14 46 46 H 0.96998 * 120.00289 * 359.97438 * 21 19 18 47 47 H 0.96995 * 119.99965 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7429 2.4016 1.3073 6 6 3.7142 1.9385 -0.1239 7 8 4.4552 1.0199 0.1554 8 7 4.2253 3.1123 -0.5451 9 6 3.3402 4.2369 -0.8875 10 6 3.8892 5.5012 -0.2029 11 1 3.2631 6.3767 -0.3754 12 6 4.0559 5.1895 1.3015 13 6 5.4809 4.6142 1.4354 14 6 6.0517 4.6313 -0.0032 15 1 7.1253 4.8177 -0.0281 16 6 5.6798 3.2956 -0.6721 17 7 5.2792 5.6981 -0.6940 18 6 5.7817 7.0302 -0.3320 19 6 7.0827 7.2878 -1.0475 20 8 7.5461 6.4445 -1.7859 21 7 7.7320 8.4549 -0.8660 22 6 8.9159 8.6891 -1.5165 23 1 9.3280 7.9385 -2.1747 24 6 9.5849 9.8925 -1.3299 25 7 9.0832 10.8060 -0.5295 26 14 11.1977 10.2118 -2.2168 27 1 10.9769 10.1480 -3.6839 28 1 11.7059 11.5582 -1.8504 29 1 12.1925 9.1830 -1.8207 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.6636 2.2778 1.3969 34 1 2.2354 1.9150 2.1491 35 1 1.9877 3.4637 1.3071 36 1 2.3309 4.0334 -0.5300 37 1 3.3271 4.3795 -1.9682 38 1 3.9584 6.1014 1.8906 39 1 3.3183 4.4528 1.6199 40 1 6.0837 5.2435 2.0904 41 1 5.4435 3.5942 1.8178 42 1 5.9572 3.3214 -1.7259 43 1 6.1990 2.4770 -0.1739 44 1 5.0514 7.7854 -0.6228 45 1 5.9437 7.0772 0.7448 46 1 7.3616 9.1292 -0.2752 47 1 9.5505 11.6459 -0.3990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267389303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:08 Heat of formation + Delta-G solvation = -66.292999 kcal Electronic energy + Delta-G solvation = -28738.393254 eV Core-core repulsion = 24854.050181 eV Total energy + Delta-G solvation = -3884.343073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26895 -40.35213 -39.41625 -36.10347 -35.71644 -34.43580 -33.26378 -32.36181 -32.26559 -29.65614 -29.09767 -27.44799 -26.22774 -25.63323 -24.77843 -21.82997 -21.59394 -21.00283 -19.96971 -19.56285 -18.58067 -17.87525 -17.62728 -17.07033 -16.74628 -16.45747 -16.20073 -16.01353 -15.66288 -15.48487 -15.11119 -15.08538 -14.92081 -14.77637 -14.33708 -14.03449 -13.95595 -13.68861 -13.55409 -13.50304 -13.27858 -13.20295 -12.93912 -12.88164 -12.77387 -12.43224 -12.37150 -12.17066 -12.12928 -11.99759 -11.83472 -11.46576 -11.41884 -10.90102 -10.76467 -10.34413 -9.98418 -9.84885 -9.35941 -8.71103 -8.45141 -5.93000 0.46934 1.39430 1.41175 1.47131 1.51527 1.65932 1.90363 2.09872 2.28790 2.72044 3.21582 3.24169 3.37575 3.62201 3.74187 3.80940 3.86701 3.90712 3.97449 4.15249 4.29173 4.31233 4.34288 4.38556 4.41068 4.48641 4.54356 4.57152 4.62429 4.66531 4.68308 4.73567 4.81187 4.85346 4.93132 4.97508 5.07728 5.18722 5.28742 5.38652 5.42049 5.80483 5.90004 6.09006 6.33267 6.63380 7.01473 7.15682 7.60250 8.16774 8.71989 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.002312 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.618498 B =12107.785780 C =12437.274625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.273 6.273 3 C -0.075 4.075 4 H 0.134 0.866 5 C -0.144 4.144 6 C 0.529 3.471 7 O -0.572 6.572 8 N -0.593 5.593 9 C 0.114 3.886 10 C 0.047 3.953 11 H 0.138 0.862 12 C -0.142 4.142 13 C -0.142 4.142 14 C 0.060 3.940 15 H 0.074 0.926 16 C 0.138 3.862 17 N -0.496 5.496 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.577 5.577 22 C -0.330 4.330 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.069 0.931 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.372 -11.483 5.929 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.048 6.048 3 C -0.207 4.207 4 H 0.152 0.848 5 C -0.202 4.202 6 C 0.317 3.683 7 O -0.451 6.451 8 N -0.325 5.325 9 C -0.008 4.008 10 C -0.062 4.062 11 H 0.156 0.844 12 C -0.180 4.180 13 C -0.182 4.182 14 C -0.050 4.050 15 H 0.092 0.908 16 C 0.014 3.986 17 N -0.219 5.219 18 C -0.080 4.080 19 C 0.229 3.771 20 O -0.502 6.502 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.200 1.200 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.143 0.857 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.894 -13.231 5.014 26.068 hybrid contribution 0.636 1.646 0.585 1.860 sum -21.258 -11.585 5.599 24.848 Atomic orbital electron populations 1.23581 0.90936 1.07679 1.06478 1.87833 1.10102 1.08770 1.98102 1.23307 0.94640 0.97103 1.05626 0.84787 1.22194 1.03440 1.01638 0.92977 1.20259 0.90207 0.81737 0.76124 1.90716 1.61885 1.41253 1.51258 1.48050 1.06947 1.12722 1.64828 1.22310 0.93807 0.83596 1.01105 1.23733 0.90468 0.99205 0.92751 0.84438 1.22964 0.95895 1.02085 0.97078 1.22827 0.97600 1.01350 0.96400 1.23251 0.98060 0.91563 0.92127 0.90826 1.21532 0.80566 0.96084 1.00379 1.64997 1.02614 1.00769 1.53524 1.21812 0.94662 0.93184 0.98320 1.20862 0.88078 0.82530 0.85615 1.90499 1.70227 1.46835 1.42686 1.41930 1.21042 1.15979 1.42493 1.19567 0.99461 1.01872 1.25053 0.90584 1.25974 1.02612 0.94867 0.97828 1.69654 1.41187 1.07819 1.37460 0.85047 0.77582 0.77616 0.78452 1.19782 1.19491 1.19978 0.88625 0.88964 0.87136 0.88424 0.92233 0.89126 0.85715 0.90127 0.89855 0.89189 0.91990 0.91844 0.92237 0.90541 0.86552 0.91287 0.77050 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.45 113.37 1.19 0.18 16 2 S -0.27 -5.36 21.04 -56.49 -1.19 -6.55 16 3 C -0.08 -1.18 2.32 29.85 0.07 -1.11 16 4 H 0.13 1.37 6.94 -2.39 -0.02 1.36 16 5 C -0.14 -1.45 8.76 71.98 0.63 -0.82 16 6 C 0.53 13.04 6.88 87.66 0.60 13.64 16 7 O -0.57 -19.70 15.51 -3.02 -0.05 -19.75 16 8 N -0.59 -13.61 2.24 -814.95 -1.83 -15.43 16 9 C 0.11 1.78 5.40 86.56 0.47 2.25 16 10 C 0.05 0.82 3.67 45.39 0.17 0.99 16 11 H 0.14 1.67 7.97 -2.39 -0.02 1.65 16 12 C -0.14 -2.32 5.68 31.55 0.18 -2.14 16 13 C -0.14 -3.42 5.48 31.63 0.17 -3.25 16 14 C 0.06 1.83 3.23 45.48 0.15 1.97 16 15 H 0.07 2.85 7.01 -2.39 -0.02 2.83 16 16 C 0.14 4.13 5.90 86.57 0.51 4.64 16 17 N -0.50 -14.25 4.56 -831.07 -3.79 -18.04 16 18 C 0.05 1.63 5.15 85.56 0.44 2.07 16 19 C 0.44 20.39 7.44 87.66 0.65 21.04 16 20 O -0.62 -33.60 14.93 -3.05 -0.05 -33.65 16 21 N -0.58 -29.02 5.29 -306.98 -1.62 -30.65 16 22 C -0.33 -18.63 9.68 84.04 0.81 -17.81 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 26 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 30 H 0.09 0.49 7.14 -2.39 -0.02 0.47 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.48 6.92 -2.38 -0.02 0.46 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.65 4.15 -2.39 -0.01 0.64 16 36 H 0.13 0.95 4.72 -2.39 -0.01 0.94 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.16 5.17 -2.39 -0.01 1.14 16 40 H 0.06 1.54 7.94 -2.38 -0.02 1.52 16 41 H 0.06 1.61 7.84 -2.39 -0.02 1.59 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.49 7.10 -2.39 -0.02 2.47 16 44 H 0.12 3.05 7.96 -2.39 -0.02 3.03 16 45 H 0.07 1.98 6.98 -2.39 -0.02 1.96 16 46 H 0.40 18.82 7.90 -92.71 -0.73 18.08 16 47 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -77.16 373.07 0.56 -76.59 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.27 Total: 29.89 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 6.51 Total: 21.42 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -6.96 Total: -113.09 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.09 Total: -53.40 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.19 Total: -6.55 kcal Total: -77.16 0.56 -76.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267389303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.297 kcal (2) G-P(sol) polarization free energy of solvation -77.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds