Wall clock time and date at job start Wed Apr 1 2020 00:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00079 * 2 1 4 4 H 1.09001 * 109.46837 * 54.99726 * 3 2 1 5 5 C 1.53002 * 109.46990 * 295.00322 * 3 2 1 6 6 C 1.50697 * 109.47526 * 174.99882 * 3 2 1 7 7 O 1.21281 * 119.99687 * 25.06215 * 6 3 2 8 8 N 1.34776 * 120.00127 * 205.06203 * 6 3 2 9 9 C 1.47150 * 120.68483 * 354.93897 * 8 6 3 10 10 C 1.55316 * 107.98682 * 132.37855 * 9 8 6 11 11 H 1.09005 * 112.23008 * 181.88028 * 10 9 8 12 12 C 1.54545 * 108.41038 * 307.02217 * 10 9 8 13 13 C 1.54258 * 104.94136 * 88.38861 * 12 10 9 14 14 C 1.54546 * 104.93851 * 0.02562 * 13 12 10 15 15 H 1.08997 * 112.20836 * 146.47704 * 14 13 12 16 16 C 1.47155 * 120.68168 * 174.91305 * 8 6 3 17 17 N 1.48728 * 106.44463 * 58.73871 * 10 9 8 18 18 C 1.46896 * 111.00534 * 167.10705 * 17 10 9 19 19 C 1.50697 * 109.47133 * 284.79728 * 18 17 10 20 20 O 1.21299 * 119.99839 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99909 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99482 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00416 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99416 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00189 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99699 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46952 * 179.97438 * 26 24 22 28 28 H 1.48508 * 109.47058 * 299.99823 * 26 24 22 29 29 H 1.48497 * 109.47320 * 59.99986 * 26 24 22 30 30 H 1.08993 * 109.47307 * 60.00005 * 1 2 3 31 31 H 1.09003 * 109.46639 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47061 * 299.99515 * 1 2 3 33 33 H 1.08999 * 109.47378 * 59.99669 * 5 3 2 34 34 H 1.09001 * 109.46825 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46844 * 299.99400 * 5 3 2 36 36 H 1.08995 * 109.74413 * 252.24687 * 9 8 6 37 37 H 1.09004 * 109.74316 * 12.92717 * 9 8 6 38 38 H 1.09004 * 110.34765 * 207.25880 * 12 10 9 39 39 H 1.09005 * 110.34726 * 329.41761 * 12 10 9 40 40 H 1.08992 * 110.34926 * 241.13110 * 13 12 10 41 41 H 1.09007 * 110.34018 * 118.86554 * 13 12 10 42 42 H 1.08998 * 109.74409 * 107.74890 * 16 8 6 43 43 H 1.09000 * 109.74310 * 347.02472 * 16 8 6 44 44 H 1.09002 * 109.47441 * 164.79253 * 18 17 10 45 45 H 1.09006 * 109.46597 * 44.79237 * 18 17 10 46 46 H 0.96993 * 120.00208 * 359.97438 * 21 19 18 47 47 H 0.97002 * 119.99991 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4016 -1.3073 6 6 3.7142 1.9386 0.1239 7 8 4.4584 1.0537 -0.2419 8 7 4.2215 3.0751 0.6410 9 6 3.3403 4.2017 0.9868 10 6 3.7213 4.6890 2.4114 11 1 3.0853 5.5064 2.7515 12 6 3.6936 3.4743 3.3664 13 6 5.1119 2.8730 3.2864 14 6 5.8725 3.7775 2.2905 15 1 6.9277 3.8749 2.5455 16 6 5.6681 3.2146 0.8722 17 7 5.1555 5.0788 2.3535 18 6 5.5441 5.8359 3.5509 19 6 4.9952 7.2364 3.4597 20 8 4.3447 7.5710 2.4921 21 7 5.2272 8.1171 4.4532 22 6 4.7282 9.3914 4.3699 23 1 4.1498 9.6896 3.5081 24 6 4.9669 10.2992 5.3945 25 7 5.6713 9.9365 6.4429 26 14 4.2866 12.0352 5.2815 27 1 4.6779 12.8001 6.4928 28 1 4.8350 12.7042 4.0744 29 1 2.8055 11.9813 5.1877 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.6635 2.2778 -1.3969 34 1 1.9875 3.4637 -1.3071 35 1 2.2354 1.9150 -2.1491 36 1 3.4766 5.0098 0.2681 37 1 2.3012 3.8725 0.9782 38 1 3.4758 3.7974 4.3844 39 1 2.9527 2.7473 3.0336 40 1 5.0693 1.8498 2.9133 41 1 5.5910 2.9007 4.2651 42 1 6.0937 3.9000 0.1392 43 1 6.1498 2.2404 0.7895 44 1 6.6313 5.8754 3.6189 45 1 5.1421 5.3451 4.4373 46 1 5.7470 7.8494 5.2271 47 1 6.0243 9.0349 6.5018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267389304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:11 Heat of formation + Delta-G solvation = -44.585504 kcal Electronic energy + Delta-G solvation = -28762.073939 eV Core-core repulsion = 24878.672173 eV Total energy + Delta-G solvation = -3883.401766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21018 -39.19328 -37.93430 -34.93218 -34.29061 -33.53193 -31.47775 -31.36183 -30.90389 -29.16082 -28.00530 -25.93816 -25.04911 -24.44033 -23.67288 -20.79620 -20.62493 -19.70427 -18.72742 -17.96387 -17.65822 -16.89413 -16.49590 -16.18807 -15.49703 -15.32507 -14.96910 -14.65822 -14.51719 -14.21386 -14.11154 -13.93536 -13.86661 -13.69215 -13.60584 -13.30952 -12.91792 -12.70526 -12.55175 -12.39127 -12.31384 -12.06196 -11.94396 -11.59382 -11.27544 -11.16354 -11.09459 -10.97803 -10.88542 -10.56330 -10.23693 -10.16846 -9.91282 -9.89343 -9.56182 -8.98575 -8.53325 -8.19334 -8.06247 -7.95813 -6.78146 -3.91581 1.14459 2.18281 2.45118 2.81269 3.27988 3.32122 3.52164 3.73645 3.83156 4.09451 4.24501 4.44447 4.46181 4.59489 4.64939 4.72534 4.77116 4.79334 4.80470 4.97701 5.07904 5.11996 5.19105 5.20606 5.25010 5.33939 5.39387 5.44760 5.49873 5.61356 5.68984 5.69842 5.74993 5.76653 5.79868 5.82437 5.97943 6.00855 6.11569 6.34462 6.86895 6.97931 7.23235 7.77252 7.93530 8.04770 8.57204 8.77171 9.44642 9.85219 10.65216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.002508 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.685874 B =11162.244151 C =11676.787837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.193 6.193 3 C -0.094 4.094 4 H 0.108 0.892 5 C -0.144 4.144 6 C 0.537 3.463 7 O -0.527 6.527 8 N -0.598 5.598 9 C 0.120 3.880 10 C 0.058 3.942 11 H 0.115 0.885 12 C -0.147 4.147 13 C -0.145 4.145 14 C 0.045 3.955 15 H 0.105 0.895 16 C 0.131 3.869 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.572 6.572 21 N -0.577 5.577 22 C -0.381 4.381 23 H 0.099 0.901 24 C -0.010 4.010 25 N -0.901 5.901 26 Si 1.090 2.910 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.375 0.625 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 -17.533 -8.731 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.033 5.967 3 C -0.226 4.226 4 H 0.126 0.874 5 C -0.203 4.203 6 C 0.323 3.677 7 O -0.403 6.403 8 N -0.331 5.331 9 C -0.003 4.003 10 C -0.052 4.052 11 H 0.133 0.867 12 C -0.186 4.186 13 C -0.184 4.184 14 C -0.065 4.065 15 H 0.123 0.877 16 C 0.008 3.992 17 N -0.198 5.198 18 C -0.097 4.097 19 C 0.233 3.767 20 O -0.455 6.455 21 N -0.215 5.215 22 C -0.510 4.510 23 H 0.116 0.884 24 C -0.212 4.212 25 N -0.540 5.540 26 Si 0.916 3.084 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.208 0.792 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.259 -16.793 -9.254 20.170 hybrid contribution -0.658 -0.997 0.624 1.348 sum -6.916 -17.790 -8.630 20.948 Atomic orbital electron populations 1.23547 0.95540 1.06648 1.05016 1.87367 1.05049 1.06420 1.97868 1.23397 0.97638 0.98001 1.03557 0.87385 1.22016 1.01886 1.01482 0.94887 1.19555 0.88680 0.81853 0.77642 1.90723 1.60156 1.41075 1.48366 1.48021 1.08353 1.14467 1.62264 1.22329 0.92842 0.88433 0.96745 1.23696 0.91668 0.96055 0.93756 0.86672 1.22855 0.97342 0.97990 1.00446 1.22833 0.95647 1.00144 0.99778 1.23543 0.99172 0.88938 0.94800 0.87677 1.21813 0.79923 1.01716 0.95703 1.65068 1.03321 1.14389 1.36991 1.21987 1.01121 0.94518 0.92076 1.19623 0.86009 0.86206 0.84863 1.90515 1.43414 1.78979 1.32581 1.41947 1.48741 1.11842 1.19014 1.20506 1.34035 0.87676 1.08827 0.88356 1.26494 0.96922 1.05789 0.91996 1.70903 1.33308 1.20728 1.29099 0.83145 0.75962 0.72963 0.76299 1.20421 1.20988 1.21049 0.90309 0.87812 0.90487 0.91243 0.90827 0.90522 0.89464 0.90060 0.91411 0.91468 0.91084 0.91521 0.90392 0.88931 0.89416 0.92986 0.79244 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 10.45 101.05 1.06 0.16 16 2 S -0.19 -2.04 21.10 -107.50 -2.27 -4.31 16 3 C -0.09 -0.93 2.34 -27.88 -0.07 -0.99 16 4 H 0.11 0.91 6.38 -51.92 -0.33 0.58 16 5 C -0.14 -1.16 8.95 37.16 0.33 -0.83 16 6 C 0.54 6.78 6.81 -10.99 -0.07 6.70 16 7 O -0.53 -8.41 15.63 5.56 0.09 -8.32 16 8 N -0.60 -7.10 2.28 -170.61 -0.39 -7.49 16 9 C 0.12 1.38 5.34 -2.46 -0.01 1.37 16 10 C 0.06 0.79 3.26 -64.66 -0.21 0.58 16 11 H 0.12 1.86 7.01 -51.93 -0.36 1.50 16 12 C -0.15 -1.71 5.49 -25.26 -0.14 -1.85 16 13 C -0.14 -1.63 5.70 -25.26 -0.14 -1.77 16 14 C 0.05 0.54 3.63 -65.40 -0.24 0.30 16 15 H 0.11 1.12 7.97 -51.93 -0.41 0.71 16 16 C 0.13 1.57 5.90 -3.19 -0.02 1.55 16 17 N -0.48 -7.09 4.54 -213.30 -0.97 -8.06 16 18 C 0.03 0.57 5.15 -4.98 -0.03 0.55 16 19 C 0.45 9.99 7.43 -10.99 -0.08 9.91 16 20 O -0.57 -14.64 14.93 5.54 0.08 -14.56 16 21 N -0.58 -14.00 5.28 -10.96 -0.06 -14.06 16 22 C -0.38 -10.42 9.68 -14.93 -0.14 -10.56 16 23 H 0.10 2.84 7.16 -52.49 -0.38 2.47 16 24 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 25 N -0.90 -24.84 13.68 55.50 0.76 -24.08 16 26 Si 1.09 23.81 29.92 -169.99 -5.09 18.72 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 30 H 0.08 0.43 7.14 -51.93 -0.37 0.06 16 31 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.07 0.44 6.92 -51.93 -0.36 0.08 16 34 H 0.07 0.57 7.48 -51.93 -0.39 0.18 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.74 5.36 -51.93 -0.28 0.46 16 38 H 0.07 0.81 7.93 -51.93 -0.41 0.39 16 39 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 40 H 0.07 0.82 7.86 -51.93 -0.41 0.42 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.12 7.15 -51.93 -0.37 0.75 16 44 H 0.09 1.32 7.96 -51.93 -0.41 0.90 16 45 H 0.05 0.79 6.98 -51.93 -0.36 0.42 16 46 H 0.37 8.45 6.73 -40.82 -0.27 8.17 16 47 H 0.26 6.90 6.78 -40.82 -0.28 6.62 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -33.37 377.88 -9.15 -42.52 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.14 Total: 9.18 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 0.14 Total: 4.75 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.66 Total: -53.68 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.09 Total: 18.72 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.27 Total: -4.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.37 -9.15 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267389304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.063 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds