Wall clock time and date at job start Wed Apr 1 2020 00:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46490 * 2 1 4 4 C 1.50694 * 109.47072 * 119.99544 * 2 1 3 5 5 O 1.21291 * 119.99783 * 113.25882 * 4 2 1 6 6 N 1.34772 * 120.00661 * 293.25967 * 4 2 1 7 7 C 1.46491 * 120.00541 * 177.12323 * 6 4 2 8 8 C 1.46506 * 119.99668 * 357.12312 * 6 4 2 9 9 N 1.46900 * 109.47411 * 240.00002 * 2 1 3 10 10 C 1.50361 * 110.65822 * 67.26915 * 9 2 1 11 11 C 1.56012 * 104.07438 * 122.89596 * 10 9 2 12 12 H 1.08999 * 116.21750 * 159.17918 * 11 10 9 13 13 C 1.57078 * 100.48023 * 32.56350 * 11 10 9 14 14 C 1.49704 * 111.00040 * 184.89998 * 9 2 1 15 15 H 1.09000 * 116.80042 * 75.75174 * 14 9 2 16 16 C 1.55998 * 104.30771 * 306.03835 * 14 9 2 17 17 N 1.47859 * 105.12694 * 289.15008 * 16 14 9 18 18 C 1.34777 * 126.92786 * 181.81517 * 17 16 14 19 19 O 1.21278 * 120.00013 * 179.68489 * 18 17 16 20 20 C 1.50698 * 120.00027 * 359.67892 * 18 17 16 21 21 S 1.81000 * 109.47056 * 180.02562 * 20 18 17 22 22 C 1.76204 * 99.99986 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99671 * 359.97438 * 22 21 20 24 24 C 1.38801 * 120.00011 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99959 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99835 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47306 * 90.00201 * 26 24 22 28 28 H 1.48507 * 109.46955 * 210.00252 * 26 24 22 29 29 H 1.48497 * 109.47130 * 330.00003 * 26 24 22 30 30 H 1.09008 * 109.47020 * 184.43722 * 1 2 3 31 31 H 1.08994 * 109.47567 * 304.43787 * 1 2 3 32 32 H 1.09003 * 109.47172 * 64.44447 * 1 2 3 33 33 H 1.09004 * 109.47523 * 89.99630 * 7 6 4 34 34 H 1.09002 * 109.47708 * 209.99903 * 7 6 4 35 35 H 1.09009 * 109.47185 * 329.99925 * 7 6 4 36 36 H 1.09003 * 109.46888 * 5.52776 * 8 6 4 37 37 H 1.08999 * 109.47375 * 125.53519 * 8 6 4 38 38 H 1.09000 * 109.46899 * 245.53326 * 8 6 4 39 39 H 1.09007 * 111.27559 * 4.09456 * 10 9 2 40 40 H 1.08993 * 110.32691 * 241.23808 * 10 9 2 41 41 H 1.09003 * 112.35291 * 63.93056 * 13 11 10 42 42 H 1.08993 * 112.35804 * 191.25426 * 13 11 10 43 43 H 1.09003 * 110.41176 * 170.17800 * 16 14 9 44 44 H 1.09001 * 110.20227 * 48.01254 * 16 14 9 45 45 H 1.08997 * 109.47167 * 60.00321 * 20 18 17 46 46 H 1.09002 * 109.47089 * 300.00646 * 20 18 17 47 47 H 0.96998 * 120.00359 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6255 -1.7628 1.1234 6 7 1.8225 -0.1761 2.4499 7 6 2.2549 -0.8969 3.6497 8 6 1.1618 1.1255 2.5756 9 7 2.0198 -0.6925 -1.1994 10 6 1.6841 0.0906 -2.4383 11 6 3.0663 0.3333 -3.1199 12 1 3.0439 0.5668 -4.1843 13 6 3.8230 -0.9797 -2.7068 14 6 3.5115 -0.8167 -1.1757 15 1 3.9313 -1.5712 -0.5106 16 6 4.0166 0.6442 -0.9652 17 7 3.7349 1.3374 -2.2405 18 6 4.0281 2.6162 -2.5490 19 8 3.7432 3.0569 -3.6424 20 6 4.7100 3.4985 -1.5353 21 16 4.9652 5.1448 -2.2430 22 6 5.7552 5.9425 -0.8850 23 1 5.9370 5.3978 0.0298 24 6 6.1440 7.2707 -0.9909 25 7 5.9219 7.9346 -2.1056 26 14 6.9809 8.1166 0.4491 27 1 8.4510 7.9365 0.3426 28 1 6.6569 9.5657 0.4283 29 1 6.5000 7.5200 1.7211 30 1 -0.3633 -1.0247 0.0795 31 1 -0.3634 0.5811 0.8475 32 1 -0.3634 0.4433 -0.9271 33 1 3.2757 -0.6075 3.8994 34 1 1.5937 -0.6497 4.4803 35 1 2.2171 -1.9701 3.4622 36 1 0.8277 1.4596 1.5933 37 1 0.3027 1.0342 3.2402 38 1 1.8638 1.8509 2.9868 39 1 1.2126 1.0415 -2.1896 40 1 1.0371 -0.4941 -3.0921 41 1 3.3644 -1.8732 -3.1304 42 1 4.8903 -0.9282 -2.9219 43 1 5.0870 0.6503 -0.7595 44 1 3.4709 1.1172 -0.1488 45 1 5.6731 3.0652 -1.2659 46 1 4.0859 3.5787 -0.6452 47 1 5.4863 7.4957 -2.8529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268926792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:54 Heat of formation + Delta-G solvation = -8.976918 kcal Electronic energy + Delta-G solvation = -28965.347957 eV Core-core repulsion = 25083.490296 eV Total energy + Delta-G solvation = -3881.857662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66907 -39.90431 -38.20789 -35.90779 -34.85556 -32.57550 -32.45090 -30.23908 -29.60555 -28.58350 -27.90283 -26.76913 -25.24985 -24.85875 -23.57405 -21.39114 -20.97687 -19.57091 -18.75213 -18.22009 -17.66202 -17.03465 -16.91537 -16.39871 -15.87663 -15.41772 -15.18051 -14.71215 -14.60245 -13.98954 -13.95264 -13.86089 -13.44513 -13.40378 -13.18097 -13.03209 -12.87430 -12.74122 -12.56657 -12.43498 -12.27764 -12.17608 -12.13335 -11.85984 -11.81264 -11.74241 -11.60017 -11.36073 -11.20117 -10.94902 -10.23060 -9.88846 -9.64489 -9.59496 -9.06315 -9.05629 -8.83822 -8.42697 -8.27276 -6.72533 -6.66591 -4.04986 2.29607 2.55702 2.67308 2.88263 3.27530 3.35019 3.38077 3.46264 3.52267 4.01933 4.13628 4.19995 4.29043 4.49743 4.58987 4.68614 4.71916 4.80542 4.82202 4.93891 4.95401 5.08561 5.14765 5.18081 5.21219 5.23774 5.30720 5.34239 5.36064 5.45368 5.48386 5.51208 5.63470 5.64320 5.68822 5.72395 5.79445 5.85041 5.94417 6.06472 6.16523 6.37850 6.55052 6.97557 7.54163 7.85497 7.87444 8.38513 8.45705 9.22545 10.77392 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003397 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.185582 B = 8239.952962 C = 9797.206183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 H 0.075 0.925 4 C 0.520 3.480 5 O -0.522 6.522 6 N -0.621 5.621 7 C 0.086 3.914 8 C 0.064 3.936 9 N -0.491 5.491 10 C 0.026 3.974 11 C 0.112 3.888 12 H 0.127 0.873 13 C -0.134 4.134 14 C 0.059 3.941 15 H 0.149 0.851 16 C 0.063 3.937 17 N -0.627 5.627 18 C 0.550 3.450 19 O -0.515 6.515 20 C -0.123 4.123 21 S -0.114 6.114 22 C -0.608 4.608 23 H 0.065 0.935 24 C 0.036 3.964 25 N -0.884 5.884 26 Si 1.086 2.914 27 H -0.284 1.284 28 H -0.279 1.279 29 H -0.287 1.287 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 -20.270 8.949 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 H 0.092 0.908 4 C 0.308 3.692 5 O -0.397 6.397 6 N -0.356 5.356 7 C -0.056 4.056 8 C -0.079 4.079 9 N -0.216 5.216 10 C -0.102 4.102 11 C 0.008 3.992 12 H 0.145 0.855 13 C -0.172 4.172 14 C -0.048 4.048 15 H 0.167 0.833 16 C -0.062 4.062 17 N -0.366 5.366 18 C 0.338 3.662 19 O -0.389 6.389 20 C -0.274 4.274 21 S 0.112 5.888 22 C -0.756 4.756 23 H 0.083 0.917 24 C -0.174 4.174 25 N -0.518 5.518 26 Si 0.913 3.087 27 H -0.210 1.210 28 H -0.204 1.204 29 H -0.213 1.213 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.875 -19.127 7.745 23.326 hybrid contribution 0.125 -0.942 1.283 1.596 sum -10.750 -20.069 9.028 24.491 Atomic orbital electron populations 1.21938 0.91688 1.03534 1.03104 1.21907 0.97664 0.97046 0.89937 0.90784 1.20458 0.79150 0.85487 0.84137 1.90652 1.40501 1.22662 1.85910 1.47710 1.60430 1.21183 1.06325 1.21625 0.99831 0.98043 0.86115 1.22125 0.97799 0.84159 1.03803 1.65505 1.11392 1.44553 1.00104 1.24129 0.96971 0.97382 0.91751 1.23987 0.91752 0.87048 0.96424 0.85485 1.23968 1.01108 0.97482 0.94669 1.24884 0.87230 0.94626 0.98105 0.83341 1.23231 1.01760 0.94337 0.86843 1.49322 1.61329 1.10320 1.15598 1.19994 0.77963 0.79919 0.88313 1.90708 1.52435 1.72413 1.23315 1.23279 1.02548 1.00992 1.00620 1.84816 1.78547 1.01688 1.23760 1.23716 1.48751 1.01956 1.01164 0.91675 1.26050 0.95783 0.93347 1.02242 1.70766 1.37718 1.39357 1.03924 0.83295 0.76092 0.76040 0.73313 1.21003 1.20440 1.21332 0.91144 0.91131 0.91032 0.92612 0.91198 0.90509 0.89623 0.91421 0.91672 0.91303 0.88770 0.88599 0.89595 0.90757 0.91392 0.89188 0.89499 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 2 C 0.05 0.46 0.73 -68.87 -0.05 0.41 16 3 H 0.07 0.78 5.09 -51.93 -0.26 0.52 16 4 C 0.52 5.64 6.34 -10.99 -0.07 5.57 16 5 O -0.52 -7.08 13.68 5.55 0.08 -7.00 16 6 N -0.62 -5.39 3.27 -189.51 -0.62 -6.01 16 7 C 0.09 0.63 10.46 59.84 0.63 1.25 16 8 C 0.06 0.41 9.67 59.85 0.58 0.99 16 9 N -0.49 -5.22 4.95 -208.47 -1.03 -6.25 16 10 C 0.03 0.27 5.57 -0.27 0.00 0.27 16 11 C 0.11 1.33 5.17 -62.56 -0.32 1.00 16 12 H 0.13 1.56 8.06 -51.93 -0.42 1.14 16 13 C -0.13 -1.34 6.81 -22.30 -0.15 -1.49 16 14 C 0.06 0.65 4.09 -62.32 -0.25 0.39 16 15 H 0.15 1.73 6.41 -51.93 -0.33 1.40 16 16 C 0.06 0.77 5.58 -1.69 -0.01 0.76 16 17 N -0.63 -9.15 2.94 -156.82 -0.46 -9.61 16 18 C 0.55 10.60 7.91 -10.99 -0.09 10.51 16 19 O -0.51 -11.75 16.21 5.56 0.09 -11.66 16 20 C -0.12 -2.57 5.44 36.00 0.20 -2.37 16 21 S -0.11 -3.09 19.60 -107.50 -2.11 -5.20 16 22 C -0.61 -17.49 9.50 30.94 0.29 -17.20 16 23 H 0.06 1.80 7.80 -52.48 -0.41 1.39 16 24 C 0.04 1.05 5.49 -17.43 -0.10 0.96 16 25 N -0.88 -27.38 13.67 55.49 0.76 -26.63 16 26 Si 1.09 24.82 29.92 -169.99 -5.09 19.73 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.44 5.61 -51.93 -0.29 0.14 16 32 H 0.07 0.54 6.88 -51.93 -0.36 0.19 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.08 0.64 7.46 -51.92 -0.39 0.25 16 36 H 0.09 0.54 4.17 -51.93 -0.22 0.32 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.78 7.01 -51.92 -0.36 0.41 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.84 5.21 -51.93 -0.27 0.56 16 45 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 46 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 47 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -36.20 377.48 -8.76 -44.96 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.05 Total: 1.74 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.98 Total: 0.25 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -1.35 Total: -48.50 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.17 Total: -18.66 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.20 -8.76 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268926792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.978 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds