Wall clock time and date at job start Wed Apr 1 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46490 * 2 1 4 4 C 1.50694 * 109.47072 * 119.99544 * 2 1 3 5 5 O 1.21291 * 119.99783 * 113.25882 * 4 2 1 6 6 N 1.34772 * 120.00661 * 293.25967 * 4 2 1 7 7 C 1.46491 * 120.00541 * 177.12323 * 6 4 2 8 8 C 1.46506 * 119.99668 * 357.12312 * 6 4 2 9 9 N 1.46900 * 109.47411 * 240.00002 * 2 1 3 10 10 C 1.50361 * 110.65822 * 67.26915 * 9 2 1 11 11 C 1.56012 * 104.07438 * 122.89596 * 10 9 2 12 12 H 1.08999 * 116.21750 * 159.17918 * 11 10 9 13 13 C 1.57078 * 100.48023 * 32.56350 * 11 10 9 14 14 C 1.49704 * 111.00040 * 184.89998 * 9 2 1 15 15 H 1.09000 * 116.80042 * 75.75174 * 14 9 2 16 16 C 1.55998 * 104.30771 * 306.03835 * 14 9 2 17 17 N 1.47859 * 105.12694 * 289.15008 * 16 14 9 18 18 C 1.34777 * 126.92786 * 181.81517 * 17 16 14 19 19 O 1.21278 * 120.00013 * 179.68489 * 18 17 16 20 20 C 1.50698 * 120.00027 * 359.67892 * 18 17 16 21 21 S 1.81000 * 109.47056 * 180.02562 * 20 18 17 22 22 C 1.76204 * 99.99986 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99671 * 359.97438 * 22 21 20 24 24 C 1.38801 * 120.00011 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99959 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99835 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47306 * 90.00201 * 26 24 22 28 28 H 1.48507 * 109.46955 * 210.00252 * 26 24 22 29 29 H 1.48497 * 109.47130 * 330.00003 * 26 24 22 30 30 H 1.09008 * 109.47020 * 184.43722 * 1 2 3 31 31 H 1.08994 * 109.47567 * 304.43787 * 1 2 3 32 32 H 1.09003 * 109.47172 * 64.44447 * 1 2 3 33 33 H 1.09004 * 109.47523 * 89.99630 * 7 6 4 34 34 H 1.09002 * 109.47708 * 209.99903 * 7 6 4 35 35 H 1.09009 * 109.47185 * 329.99925 * 7 6 4 36 36 H 1.09003 * 109.46888 * 5.52776 * 8 6 4 37 37 H 1.08999 * 109.47375 * 125.53519 * 8 6 4 38 38 H 1.09000 * 109.46899 * 245.53326 * 8 6 4 39 39 H 1.09007 * 111.27559 * 4.09456 * 10 9 2 40 40 H 1.08993 * 110.32691 * 241.23808 * 10 9 2 41 41 H 1.09003 * 112.35291 * 63.93056 * 13 11 10 42 42 H 1.08993 * 112.35804 * 191.25426 * 13 11 10 43 43 H 1.09003 * 110.41176 * 170.17800 * 16 14 9 44 44 H 1.09001 * 110.20227 * 48.01254 * 16 14 9 45 45 H 1.08997 * 109.47167 * 60.00321 * 20 18 17 46 46 H 1.09002 * 109.47089 * 300.00646 * 20 18 17 47 47 H 0.96998 * 120.00359 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6255 -1.7628 1.1234 6 7 1.8225 -0.1761 2.4499 7 6 2.2549 -0.8969 3.6497 8 6 1.1618 1.1255 2.5756 9 7 2.0198 -0.6925 -1.1994 10 6 1.6841 0.0906 -2.4383 11 6 3.0663 0.3333 -3.1199 12 1 3.0439 0.5668 -4.1843 13 6 3.8230 -0.9797 -2.7068 14 6 3.5115 -0.8167 -1.1757 15 1 3.9313 -1.5712 -0.5106 16 6 4.0166 0.6442 -0.9652 17 7 3.7349 1.3374 -2.2405 18 6 4.0281 2.6162 -2.5490 19 8 3.7432 3.0569 -3.6424 20 6 4.7100 3.4985 -1.5353 21 16 4.9652 5.1448 -2.2430 22 6 5.7552 5.9425 -0.8850 23 1 5.9370 5.3978 0.0298 24 6 6.1440 7.2707 -0.9909 25 7 5.9219 7.9346 -2.1056 26 14 6.9809 8.1166 0.4491 27 1 8.4510 7.9365 0.3426 28 1 6.6569 9.5657 0.4283 29 1 6.5000 7.5200 1.7211 30 1 -0.3633 -1.0247 0.0795 31 1 -0.3634 0.5811 0.8475 32 1 -0.3634 0.4433 -0.9271 33 1 3.2757 -0.6075 3.8994 34 1 1.5937 -0.6497 4.4803 35 1 2.2171 -1.9701 3.4622 36 1 0.8277 1.4596 1.5933 37 1 0.3027 1.0342 3.2402 38 1 1.8638 1.8509 2.9868 39 1 1.2126 1.0415 -2.1896 40 1 1.0371 -0.4941 -3.0921 41 1 3.3644 -1.8732 -3.1304 42 1 4.8903 -0.9282 -2.9219 43 1 5.0870 0.6503 -0.7595 44 1 3.4709 1.1172 -0.1488 45 1 5.6731 3.0652 -1.2659 46 1 4.0859 3.5787 -0.6452 47 1 5.4863 7.4957 -2.8529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268926792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:53 Heat of formation + Delta-G solvation = -35.068839 kcal Electronic energy + Delta-G solvation = -28966.479388 eV Core-core repulsion = 25083.490296 eV Total energy + Delta-G solvation = -3882.989092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62713 -40.84387 -39.58296 -36.65522 -35.80824 -34.78669 -33.58722 -31.25524 -30.80699 -29.61931 -28.55306 -27.43470 -27.13176 -26.20634 -24.39042 -22.47112 -21.91808 -20.63356 -20.34694 -19.54983 -18.59611 -18.19711 -17.96592 -17.29973 -16.95478 -16.68890 -16.34725 -16.16134 -15.75182 -15.56442 -15.12554 -14.86412 -14.63470 -14.38150 -14.32793 -14.06825 -14.04401 -13.77618 -13.74890 -13.53225 -13.38994 -13.20131 -13.03646 -12.86846 -12.77902 -12.60889 -12.55397 -12.48343 -12.25620 -12.04551 -11.96240 -11.60624 -11.17974 -11.13965 -10.71402 -10.38487 -9.97137 -9.73804 -9.40195 -8.96055 -8.92726 -6.32270 1.04778 1.36278 1.48505 1.50096 1.59030 1.76702 1.82437 1.88326 2.29781 2.64903 2.99110 3.00096 3.19630 3.29314 3.39075 3.57269 3.61934 3.78825 3.88907 3.98166 3.99814 4.15528 4.18598 4.22945 4.29931 4.37462 4.40365 4.46366 4.58576 4.60929 4.69753 4.72953 4.76660 4.79733 4.85922 4.89667 4.90006 4.98816 5.10416 5.17275 5.41693 5.52877 5.59684 5.72850 6.11445 6.20694 6.26823 6.90686 7.02425 7.08223 8.47508 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003397 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.185582 B = 8239.952962 C = 9797.206183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 H 0.069 0.931 4 C 0.515 3.485 5 O -0.556 6.556 6 N -0.621 5.621 7 C 0.084 3.916 8 C 0.059 3.941 9 N -0.493 5.493 10 C 0.034 3.966 11 C 0.101 3.899 12 H 0.123 0.877 13 C -0.120 4.120 14 C 0.067 3.933 15 H 0.146 0.854 16 C 0.059 3.941 17 N -0.616 5.616 18 C 0.551 3.449 19 O -0.559 6.559 20 C -0.100 4.100 21 S -0.186 6.186 22 C -0.615 4.615 23 H 0.072 0.928 24 C -0.015 4.015 25 N -0.911 5.911 26 Si 1.138 2.862 27 H -0.268 1.268 28 H -0.277 1.277 29 H -0.262 1.262 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 -21.555 11.103 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 H 0.086 0.914 4 C 0.303 3.697 5 O -0.434 6.434 6 N -0.354 5.354 7 C -0.058 4.058 8 C -0.083 4.083 9 N -0.217 5.217 10 C -0.094 4.094 11 C -0.002 4.002 12 H 0.141 0.859 13 C -0.158 4.158 14 C -0.041 4.041 15 H 0.164 0.836 16 C -0.064 4.064 17 N -0.351 5.351 18 C 0.339 3.661 19 O -0.437 6.437 20 C -0.252 4.252 21 S 0.041 5.959 22 C -0.763 4.763 23 H 0.090 0.910 24 C -0.219 4.219 25 N -0.546 5.546 26 Si 0.955 3.045 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.186 1.186 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.505 -20.468 9.932 25.494 hybrid contribution 0.246 -0.686 0.663 0.985 sum -11.259 -21.154 10.595 26.201 Atomic orbital electron populations 1.21933 0.90090 1.03617 1.04121 1.21948 0.98901 0.96288 0.89346 0.91409 1.20636 0.78883 0.85201 0.84975 1.90634 1.42169 1.24123 1.86469 1.47846 1.59710 1.21781 1.06074 1.21725 1.00528 0.97221 0.86365 1.22297 0.98547 0.82995 1.04463 1.65559 1.11015 1.44674 1.00486 1.24115 0.96048 0.97387 0.91811 1.24278 0.92971 0.86841 0.96072 0.85928 1.23947 1.01127 0.96975 0.93799 1.24805 0.87493 0.93263 0.98538 0.83626 1.23418 1.02170 0.95188 0.85668 1.49233 1.59759 1.09129 1.17020 1.19635 0.78014 0.81210 0.87264 1.90691 1.54609 1.73670 1.24743 1.23134 1.03708 0.97257 1.01081 1.85016 1.78805 1.06638 1.25424 1.24031 1.48355 1.02443 1.01433 0.90963 1.27816 0.95643 0.94475 1.03955 1.70889 1.39440 1.39724 1.04584 0.82703 0.75857 0.75118 0.70780 1.19367 1.20209 1.18649 0.91587 0.89355 0.90718 0.92734 0.88494 0.91791 0.89609 0.89054 0.91466 0.92174 0.86591 0.86582 0.89483 0.90414 0.91079 0.88130 0.87974 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.84 71.98 0.64 -1.27 16 2 C 0.05 0.85 0.73 44.17 0.03 0.88 16 3 H 0.07 1.32 5.09 -2.39 -0.01 1.31 16 4 C 0.52 10.43 6.34 87.66 0.56 10.98 16 5 O -0.56 -14.54 13.68 -3.06 -0.04 -14.58 16 6 N -0.62 -9.58 3.27 -871.88 -2.85 -12.44 16 7 C 0.08 1.07 10.46 127.77 1.34 2.41 16 8 C 0.06 0.60 9.67 127.77 1.24 1.84 16 9 N -0.49 -9.56 4.95 -813.46 -4.03 -13.59 16 10 C 0.03 0.65 5.57 86.67 0.48 1.13 16 11 C 0.10 2.27 5.17 46.93 0.24 2.51 16 12 H 0.12 2.92 8.06 -2.39 -0.02 2.90 16 13 C -0.12 -2.16 6.81 33.46 0.23 -1.93 16 14 C 0.07 1.35 4.09 46.84 0.19 1.54 16 15 H 0.15 3.19 6.41 -2.39 -0.02 3.18 16 16 C 0.06 1.37 5.58 87.16 0.49 1.86 16 17 N -0.62 -17.39 2.94 -768.44 -2.26 -19.64 16 18 C 0.55 21.23 7.91 87.66 0.69 21.93 16 19 O -0.56 -26.09 16.21 -3.02 -0.05 -26.14 16 20 C -0.10 -4.16 5.44 71.24 0.39 -3.77 16 21 S -0.19 -10.28 19.60 -56.49 -1.11 -11.38 16 22 C -0.62 -35.48 9.50 67.95 0.65 -34.83 16 23 H 0.07 3.93 7.80 -2.91 -0.02 3.91 16 24 C -0.02 -0.89 5.49 84.86 0.47 -0.43 16 25 N -0.91 -57.56 13.67 21.65 0.30 -57.27 16 26 Si 1.14 48.88 29.92 68.60 2.05 50.93 16 27 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 29 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 0.87 5.61 -2.39 -0.01 0.85 16 32 H 0.07 0.98 6.88 -2.39 -0.02 0.96 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 34 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 35 H 0.06 1.00 7.46 -2.38 -0.02 0.98 16 36 H 0.09 0.87 4.17 -2.39 -0.01 0.86 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 1.27 7.01 -2.38 -0.02 1.25 16 40 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.64 5.21 -2.39 -0.01 1.63 16 45 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 46 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 47 H 0.26 17.16 7.12 -92.71 -0.66 16.50 16 Total: -1.00 -80.17 377.48 0.72 -79.45 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.09 Total: 21.82 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 7.62 Total: 2.85 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -8.84 Total: -102.93 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.09 Total: -40.73 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.05 Total: 50.93 kcal Atomic # 16 Polarization: -10.28 SS G_CDS: -1.11 Total: -11.38 kcal Total: -80.17 0.72 -79.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268926792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.379 kcal (2) G-P(sol) polarization free energy of solvation -80.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds