Wall clock time and date at job start Wed Apr 1 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47604 * 2 1 4 4 C 1.50702 * 109.47004 * 240.00092 * 2 1 3 5 5 O 1.21281 * 120.00055 * 256.87539 * 4 2 1 6 6 N 1.34778 * 120.00103 * 76.87344 * 4 2 1 7 7 C 1.46501 * 119.99847 * 175.64145 * 6 4 2 8 8 C 1.46497 * 119.99845 * 355.63496 * 6 4 2 9 9 N 1.46904 * 109.47389 * 120.00423 * 2 1 3 10 10 C 1.48279 * 111.00129 * 191.48749 * 9 2 1 11 11 C 1.56012 * 105.07236 * 122.54204 * 10 9 2 12 12 H 1.08996 * 116.21886 * 158.90398 * 11 10 9 13 13 C 1.57074 * 99.67495 * 32.87147 * 11 10 9 14 14 C 1.49710 * 110.99528 * 309.08247 * 9 2 1 15 15 H 1.09003 * 116.16270 * 76.14513 * 14 9 2 16 16 C 1.56017 * 104.08583 * 306.12452 * 14 9 2 17 17 N 1.47860 * 105.11503 * 288.80201 * 16 14 9 18 18 C 1.34771 * 126.92965 * 181.91654 * 17 16 14 19 19 O 1.21283 * 120.00194 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99885 * 0.02562 * 18 17 16 21 21 S 1.81002 * 109.46863 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99743 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00284 * 0.02562 * 22 21 20 24 24 C 1.38803 * 120.00146 * 180.02562 * 22 21 20 25 25 N 1.31628 * 119.99530 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00145 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46686 * 90.00316 * 26 24 22 28 28 H 1.48499 * 109.47172 * 209.99843 * 26 24 22 29 29 H 1.48501 * 109.47180 * 330.00471 * 26 24 22 30 30 H 1.09000 * 109.47381 * 186.13916 * 1 2 3 31 31 H 1.09007 * 109.46973 * 306.13255 * 1 2 3 32 32 H 1.08997 * 109.47257 * 66.13087 * 1 2 3 33 33 H 1.08993 * 109.47650 * 60.00054 * 7 6 4 34 34 H 1.09004 * 109.46985 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46808 * 299.99266 * 7 6 4 36 36 H 1.09003 * 109.46721 * 91.06071 * 8 6 4 37 37 H 1.08994 * 109.47005 * 211.05489 * 8 6 4 38 38 H 1.08997 * 109.47521 * 331.06205 * 8 6 4 39 39 H 1.08996 * 110.32275 * 241.44008 * 10 9 2 40 40 H 1.09000 * 110.32208 * 3.53827 * 10 9 2 41 41 H 1.08997 * 112.35467 * 64.14447 * 13 11 10 42 42 H 1.09005 * 112.35157 * 191.46559 * 13 11 10 43 43 H 1.09003 * 110.31236 * 47.71318 * 16 14 9 44 44 H 1.08999 * 110.31344 * 169.89044 * 16 14 9 45 45 H 1.08994 * 109.47424 * 299.99912 * 20 18 17 46 46 H 1.08995 * 109.46813 * 60.00625 * 20 18 17 47 47 H 0.97001 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.4592 -1.8424 -1.1454 6 7 2.0069 -0.0878 -2.4256 7 6 2.5824 -0.7409 -3.6040 8 6 1.4039 1.2418 -2.5462 9 7 2.0197 -0.6926 1.1994 10 6 3.4758 -0.4782 1.3795 11 6 3.6196 0.1618 2.7950 12 1 4.5988 0.0744 3.2657 13 6 2.4245 -0.5467 3.5277 14 6 1.3677 -0.1528 2.4343 15 1 0.3405 -0.4703 2.6134 16 6 1.6293 1.3835 2.3611 17 7 3.0749 1.5417 2.6280 18 6 3.7625 2.6983 2.7047 19 8 4.9539 2.6818 2.9309 20 6 3.0508 4.0123 2.5092 21 16 4.2362 5.3704 2.6715 22 6 3.1655 6.7444 2.4060 23 1 2.1151 6.5815 2.2149 24 6 3.6721 8.0362 2.4422 25 7 4.9524 8.2347 2.6745 26 14 2.5371 9.4927 2.1600 27 1 1.9762 9.9422 3.4595 28 1 3.3028 10.6041 1.5405 29 1 1.4302 9.0898 1.2558 30 1 -0.3634 -1.0218 0.1099 31 1 -0.3633 0.6060 0.8301 32 1 -0.3633 0.4158 -0.9397 33 1 2.0648 -1.6825 -3.7867 34 1 2.4702 -0.0900 -4.4712 35 1 3.6408 -0.9356 -3.4309 36 1 2.1683 2.0029 -2.3893 37 1 0.9752 1.3574 -3.5416 38 1 0.6199 1.3545 -1.7975 39 1 4.0064 -1.4294 1.3385 40 1 3.8560 0.1998 0.6154 41 1 2.5636 -1.6253 3.6004 42 1 2.2075 -0.0974 4.4969 43 1 1.3839 1.7623 1.3689 44 1 1.0452 1.9034 3.1205 45 1 2.6018 4.0381 1.5163 46 1 2.2712 4.1189 3.2634 47 1 5.3065 9.1374 2.6995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268926793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:56 Heat of formation + Delta-G solvation = -6.574048 kcal Electronic energy + Delta-G solvation = -28799.236474 eV Core-core repulsion = 24917.483009 eV Total energy + Delta-G solvation = -3881.753465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65781 -39.83629 -38.18440 -35.76479 -34.75863 -32.55227 -32.47253 -30.10272 -29.65560 -28.50210 -27.88847 -26.68230 -25.55564 -25.02844 -23.69322 -21.63632 -20.52581 -19.68551 -18.61342 -17.82000 -17.66722 -16.86812 -16.69906 -16.16740 -15.84410 -15.38035 -15.21498 -14.85140 -14.42482 -14.34094 -14.05953 -13.57282 -13.47162 -13.37558 -13.17053 -12.97152 -12.87925 -12.70853 -12.63702 -12.41480 -12.24795 -12.21063 -12.09433 -11.82876 -11.63336 -11.48172 -11.35944 -11.24913 -11.10568 -11.06646 -10.80412 -9.90514 -9.86478 -9.50243 -9.11267 -8.95187 -8.79039 -8.34456 -8.28746 -6.55667 -6.26162 -3.97399 2.41890 2.63953 2.76693 2.98401 3.18296 3.20599 3.25992 3.51051 3.53699 4.04951 4.12667 4.15845 4.34447 4.43435 4.64969 4.70596 4.74953 4.79772 4.89278 4.92768 5.01022 5.08856 5.09762 5.17885 5.23993 5.29305 5.32995 5.37188 5.42954 5.51067 5.51643 5.57955 5.61991 5.68168 5.71654 5.75711 5.83023 5.85527 6.05435 6.13657 6.24388 6.45310 6.59608 7.07860 7.54371 7.62127 7.99198 8.30195 8.48664 9.18913 10.81255 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.003182 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.505678 B = 8797.759929 C = 9949.638005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 H 0.073 0.927 4 C 0.519 3.481 5 O -0.516 6.516 6 N -0.626 5.626 7 C 0.091 3.909 8 C 0.066 3.934 9 N -0.490 5.490 10 C 0.032 3.968 11 C 0.113 3.887 12 H 0.129 0.871 13 C -0.133 4.133 14 C 0.055 3.945 15 H 0.137 0.863 16 C 0.064 3.936 17 N -0.629 5.629 18 C 0.550 3.450 19 O -0.513 6.513 20 C -0.146 4.146 21 S -0.059 6.059 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.276 1.276 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 -18.419 -7.390 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 H 0.091 0.909 4 C 0.306 3.694 5 O -0.390 6.390 6 N -0.362 5.362 7 C -0.051 4.051 8 C -0.077 4.077 9 N -0.215 5.215 10 C -0.096 4.096 11 C 0.009 3.991 12 H 0.146 0.854 13 C -0.171 4.171 14 C -0.053 4.053 15 H 0.155 0.845 16 C -0.060 4.060 17 N -0.367 5.367 18 C 0.339 3.661 19 O -0.387 6.387 20 C -0.296 4.296 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.202 1.202 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.154 -19.366 -7.101 22.990 hybrid contribution -1.967 2.127 -0.589 2.956 sum -12.121 -17.238 -7.690 22.432 Atomic orbital electron populations 1.22006 0.91836 1.03978 1.03038 1.21871 0.97351 0.96711 0.90152 0.90904 1.20457 0.78528 0.86506 0.83902 1.90691 1.45143 1.17728 1.85389 1.47770 1.60345 1.19132 1.08966 1.21596 0.98829 0.97959 0.86726 1.22097 0.98726 0.83443 1.03455 1.64821 1.04174 1.52439 1.00057 1.23690 0.88650 1.00855 0.96425 1.23982 0.98962 0.80734 0.95428 0.85364 1.23949 0.94048 1.01611 0.97509 1.24714 0.99627 0.90736 0.90249 0.84550 1.23227 0.82841 0.98130 1.01850 1.49323 1.08866 1.05388 1.73132 1.20045 0.86962 0.83559 0.75534 1.90716 1.14642 1.86304 1.47033 1.23496 1.04842 0.96889 1.04377 1.85436 1.10586 0.93656 1.93587 1.22844 0.96573 0.92274 1.56742 0.90987 1.24991 0.95532 0.98416 0.94577 1.70016 1.12135 1.22273 1.45760 0.86172 0.79973 0.80824 0.78550 1.20228 1.20709 1.19701 0.90626 0.90853 0.91106 0.92141 0.90677 0.92205 0.92111 0.90708 0.90246 0.88903 0.92346 0.88584 0.89433 0.90738 0.90617 0.89694 0.89374 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.10 37.15 0.30 -0.77 16 2 C 0.05 0.51 0.73 -68.87 -0.05 0.46 16 3 H 0.07 0.77 5.35 -51.93 -0.28 0.49 16 4 C 0.52 6.25 6.42 -10.98 -0.07 6.17 16 5 O -0.52 -8.01 16.24 5.56 0.09 -7.92 16 6 N -0.63 -6.07 3.27 -189.52 -0.62 -6.69 16 7 C 0.09 0.76 10.17 59.85 0.61 1.37 16 8 C 0.07 0.46 9.81 59.85 0.59 1.04 16 9 N -0.49 -5.25 4.72 -210.26 -0.99 -6.24 16 10 C 0.03 0.40 5.57 -1.45 -0.01 0.39 16 11 C 0.11 1.38 5.22 -62.56 -0.33 1.05 16 12 H 0.13 1.65 8.08 -51.93 -0.42 1.23 16 13 C -0.13 -1.20 6.80 -22.31 -0.15 -1.36 16 14 C 0.05 0.47 4.05 -62.31 -0.25 0.22 16 15 H 0.14 0.85 7.71 -51.93 -0.40 0.45 16 16 C 0.06 0.67 5.17 -1.68 -0.01 0.66 16 17 N -0.63 -8.93 2.95 -156.80 -0.46 -9.39 16 18 C 0.55 10.53 7.91 -10.99 -0.09 10.44 16 19 O -0.51 -11.87 16.22 5.56 0.09 -11.78 16 20 C -0.15 -2.94 5.44 36.01 0.20 -2.74 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 22 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 23 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 24 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 26 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.42 6.33 -51.92 -0.33 0.09 16 32 H 0.07 0.42 5.78 -51.93 -0.30 0.12 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.42 7.81 -51.93 -0.41 0.02 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.37 7.94 -51.93 -0.41 -0.04 16 38 H 0.08 0.47 4.42 -51.93 -0.23 0.24 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.75 4.94 -51.93 -0.26 0.49 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.59 8.14 -51.92 -0.42 1.16 16 46 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -36.82 381.74 -8.89 -45.72 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.19 Total: -0.65 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.94 Total: 4.17 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.34 Total: -47.46 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.82 -8.89 -45.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268926793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.144 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds