Wall clock time and date at job start Wed Apr 1 2020 00:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47604 * 2 1 4 4 C 1.50702 * 109.47004 * 240.00092 * 2 1 3 5 5 O 1.21281 * 120.00055 * 256.87539 * 4 2 1 6 6 N 1.34778 * 120.00103 * 76.87344 * 4 2 1 7 7 C 1.46501 * 119.99847 * 175.64145 * 6 4 2 8 8 C 1.46497 * 119.99845 * 355.63496 * 6 4 2 9 9 N 1.46904 * 109.47389 * 120.00423 * 2 1 3 10 10 C 1.48279 * 111.00129 * 191.48749 * 9 2 1 11 11 C 1.56012 * 105.07236 * 122.54204 * 10 9 2 12 12 H 1.08996 * 116.21886 * 158.90398 * 11 10 9 13 13 C 1.57074 * 99.67495 * 32.87147 * 11 10 9 14 14 C 1.49710 * 110.99528 * 309.08247 * 9 2 1 15 15 H 1.09003 * 116.16270 * 76.14513 * 14 9 2 16 16 C 1.56017 * 104.08583 * 306.12452 * 14 9 2 17 17 N 1.47860 * 105.11503 * 288.80201 * 16 14 9 18 18 C 1.34771 * 126.92965 * 181.91654 * 17 16 14 19 19 O 1.21283 * 120.00194 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99885 * 0.02562 * 18 17 16 21 21 S 1.81002 * 109.46863 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99743 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00284 * 0.02562 * 22 21 20 24 24 C 1.38803 * 120.00146 * 180.02562 * 22 21 20 25 25 N 1.31628 * 119.99530 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00145 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46686 * 90.00316 * 26 24 22 28 28 H 1.48499 * 109.47172 * 209.99843 * 26 24 22 29 29 H 1.48501 * 109.47180 * 330.00471 * 26 24 22 30 30 H 1.09000 * 109.47381 * 186.13916 * 1 2 3 31 31 H 1.09007 * 109.46973 * 306.13255 * 1 2 3 32 32 H 1.08997 * 109.47257 * 66.13087 * 1 2 3 33 33 H 1.08993 * 109.47650 * 60.00054 * 7 6 4 34 34 H 1.09004 * 109.46985 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46808 * 299.99266 * 7 6 4 36 36 H 1.09003 * 109.46721 * 91.06071 * 8 6 4 37 37 H 1.08994 * 109.47005 * 211.05489 * 8 6 4 38 38 H 1.08997 * 109.47521 * 331.06205 * 8 6 4 39 39 H 1.08996 * 110.32275 * 241.44008 * 10 9 2 40 40 H 1.09000 * 110.32208 * 3.53827 * 10 9 2 41 41 H 1.08997 * 112.35467 * 64.14447 * 13 11 10 42 42 H 1.09005 * 112.35157 * 191.46559 * 13 11 10 43 43 H 1.09003 * 110.31236 * 47.71318 * 16 14 9 44 44 H 1.08999 * 110.31344 * 169.89044 * 16 14 9 45 45 H 1.08994 * 109.47424 * 299.99912 * 20 18 17 46 46 H 1.08995 * 109.46813 * 60.00625 * 20 18 17 47 47 H 0.97001 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.4592 -1.8424 -1.1454 6 7 2.0069 -0.0878 -2.4256 7 6 2.5824 -0.7409 -3.6040 8 6 1.4039 1.2418 -2.5462 9 7 2.0197 -0.6926 1.1994 10 6 3.4758 -0.4782 1.3795 11 6 3.6196 0.1618 2.7950 12 1 4.5988 0.0744 3.2657 13 6 2.4245 -0.5467 3.5277 14 6 1.3677 -0.1528 2.4343 15 1 0.3405 -0.4703 2.6134 16 6 1.6293 1.3835 2.3611 17 7 3.0749 1.5417 2.6280 18 6 3.7625 2.6983 2.7047 19 8 4.9539 2.6818 2.9309 20 6 3.0508 4.0123 2.5092 21 16 4.2362 5.3704 2.6715 22 6 3.1655 6.7444 2.4060 23 1 2.1151 6.5815 2.2149 24 6 3.6721 8.0362 2.4422 25 7 4.9524 8.2347 2.6745 26 14 2.5371 9.4927 2.1600 27 1 1.9762 9.9422 3.4595 28 1 3.3028 10.6041 1.5405 29 1 1.4302 9.0898 1.2558 30 1 -0.3634 -1.0218 0.1099 31 1 -0.3633 0.6060 0.8301 32 1 -0.3633 0.4158 -0.9397 33 1 2.0648 -1.6825 -3.7867 34 1 2.4702 -0.0900 -4.4712 35 1 3.6408 -0.9356 -3.4309 36 1 2.1683 2.0029 -2.3893 37 1 0.9752 1.3574 -3.5416 38 1 0.6199 1.3545 -1.7975 39 1 4.0064 -1.4294 1.3385 40 1 3.8560 0.1998 0.6154 41 1 2.5636 -1.6253 3.6004 42 1 2.2075 -0.0974 4.4969 43 1 1.3839 1.7623 1.3689 44 1 1.0452 1.9034 3.1205 45 1 2.6018 4.0381 1.5163 46 1 2.2712 4.1189 3.2634 47 1 5.3065 9.1374 2.6995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268926793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:55 Heat of formation + Delta-G solvation = -33.960272 kcal Electronic energy + Delta-G solvation = -28800.424030 eV Core-core repulsion = 24917.483009 eV Total energy + Delta-G solvation = -3882.941021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.59172 -40.79076 -39.57442 -36.61009 -35.72227 -34.59670 -33.62642 -31.05604 -30.82954 -29.53113 -28.59456 -27.67547 -27.40193 -26.03915 -24.43542 -22.74765 -21.37761 -20.69489 -19.95888 -19.30577 -18.51806 -18.27131 -17.60576 -17.16384 -16.89172 -16.63923 -16.61074 -16.27840 -16.08328 -15.32064 -15.18381 -14.79744 -14.43143 -14.40782 -14.11440 -14.01810 -13.74043 -13.65298 -13.60602 -13.42502 -13.41754 -13.16278 -12.97319 -12.89992 -12.87475 -12.69273 -12.55826 -12.48594 -12.22985 -12.14215 -12.10532 -11.73749 -11.15118 -11.06699 -10.79320 -10.30099 -9.87515 -9.73891 -9.31341 -8.70353 -8.35481 -6.14888 1.20020 1.42594 1.43412 1.49992 1.53970 1.55164 1.91320 1.96011 2.26123 2.72296 2.99038 3.16274 3.27482 3.36789 3.53195 3.57103 3.77183 3.88094 3.95313 3.99786 4.17469 4.19672 4.21447 4.33238 4.37890 4.40375 4.42106 4.49718 4.61858 4.64036 4.69656 4.79170 4.79780 4.82971 4.86850 4.90829 4.94640 4.99258 5.18062 5.26005 5.40507 5.43423 5.60867 5.78628 6.18637 6.30018 6.34956 7.04568 7.05678 7.12917 8.73814 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.003182 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.505678 B = 8797.759929 C = 9949.638005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 H 0.068 0.932 4 C 0.509 3.491 5 O -0.562 6.562 6 N -0.627 5.627 7 C 0.087 3.913 8 C 0.060 3.940 9 N -0.497 5.497 10 C 0.042 3.958 11 C 0.100 3.900 12 H 0.113 0.887 13 C -0.119 4.119 14 C 0.071 3.929 15 H 0.176 0.824 16 C 0.053 3.947 17 N -0.619 5.619 18 C 0.548 3.452 19 O -0.568 6.568 20 C -0.116 4.116 21 S -0.153 6.153 22 C -0.544 4.544 23 H 0.085 0.915 24 C 0.014 3.986 25 N -0.912 5.912 26 Si 0.999 3.001 27 H -0.268 1.268 28 H -0.279 1.279 29 H -0.255 1.255 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 -18.398 -7.757 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 H 0.085 0.915 4 C 0.297 3.703 5 O -0.440 6.440 6 N -0.361 5.361 7 C -0.055 4.055 8 C -0.081 4.081 9 N -0.221 5.221 10 C -0.087 4.087 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.157 4.157 14 C -0.036 4.036 15 H 0.194 0.806 16 C -0.069 4.069 17 N -0.354 5.354 18 C 0.336 3.664 19 O -0.446 6.446 20 C -0.267 4.267 21 S 0.074 5.926 22 C -0.692 4.692 23 H 0.103 0.897 24 C -0.191 4.191 25 N -0.549 5.549 26 Si 0.821 3.179 27 H -0.193 1.193 28 H -0.204 1.204 29 H -0.178 1.178 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.443 -19.368 -7.493 25.296 hybrid contribution -0.653 1.975 -0.538 2.148 sum -15.096 -17.394 -8.031 24.391 Atomic orbital electron populations 1.22037 0.89066 1.04423 1.04807 1.21916 0.99360 0.95667 0.88880 0.91459 1.20965 0.77989 0.86199 0.85139 1.90662 1.47393 1.19743 1.86194 1.47952 1.59571 1.19904 1.08697 1.21699 0.97709 0.98690 0.87392 1.22303 0.98741 0.81582 1.05510 1.64829 1.02956 1.53006 1.01314 1.23491 0.90151 0.99660 0.95389 1.24165 1.00036 0.79884 0.96273 0.86873 1.23937 0.91967 1.02051 0.97729 1.24978 1.01071 0.88915 0.88682 0.80647 1.23613 0.80218 1.00073 1.03045 1.49237 1.10737 1.04658 1.70816 1.19835 0.86365 0.84534 0.75645 1.90694 1.16823 1.87126 1.49975 1.23269 1.02922 0.94552 1.05985 1.85673 1.15259 0.97605 1.94021 1.23178 0.96913 0.92523 1.56603 0.89733 1.26145 0.97204 1.01845 0.93892 1.70190 1.14524 1.23082 1.47067 0.84945 0.77817 0.76239 0.78934 1.19323 1.20440 1.17836 0.90898 0.88656 0.89723 0.92443 0.87641 0.93877 0.92941 0.88188 0.88903 0.89568 0.95182 0.87181 0.88386 0.89833 0.88575 0.87827 0.87415 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.10 71.98 0.58 -0.95 16 2 C 0.05 0.97 0.73 44.17 0.03 1.00 16 3 H 0.07 1.30 5.35 -2.39 -0.01 1.29 16 4 C 0.51 11.99 6.42 87.66 0.56 12.55 16 5 O -0.56 -17.77 16.24 -3.03 -0.05 -17.82 16 6 N -0.63 -11.55 3.27 -871.90 -2.85 -14.40 16 7 C 0.09 1.41 10.17 127.77 1.30 2.71 16 8 C 0.06 0.70 9.81 127.77 1.25 1.96 16 9 N -0.50 -9.70 4.72 -819.15 -3.87 -13.57 16 10 C 0.04 1.04 5.57 87.08 0.48 1.52 16 11 C 0.10 2.40 5.22 46.93 0.25 2.65 16 12 H 0.11 3.06 8.08 -2.39 -0.02 3.04 16 13 C -0.12 -1.82 6.80 33.46 0.23 -1.59 16 14 C 0.07 0.94 4.05 46.85 0.19 1.13 16 15 H 0.18 1.13 7.71 -2.39 -0.02 1.11 16 16 C 0.05 0.93 5.17 87.16 0.45 1.38 16 17 N -0.62 -16.92 2.95 -768.39 -2.26 -19.18 16 18 C 0.55 21.10 7.91 87.66 0.69 21.80 16 19 O -0.57 -27.49 16.22 -3.04 -0.05 -27.54 16 20 C -0.12 -4.62 5.44 71.24 0.39 -4.23 16 21 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 22 C -0.54 -30.50 9.50 67.96 0.65 -29.86 16 23 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 24 C 0.01 0.78 5.49 84.86 0.47 1.24 16 25 N -0.91 -55.60 13.22 21.65 0.29 -55.32 16 26 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 28 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 29 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.59 6.33 -2.38 -0.02 0.58 16 32 H 0.08 0.67 5.78 -2.39 -0.01 0.65 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 1.00 7.81 -2.38 -0.02 0.98 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 0.68 7.94 -2.39 -0.02 0.66 16 38 H 0.09 0.82 4.42 -2.39 -0.01 0.81 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.03 0.90 7.39 -2.39 -0.02 0.88 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.08 1.37 4.94 -2.39 -0.01 1.36 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.10 3.70 8.14 -2.40 -0.02 3.68 16 46 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 47 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -85.25 381.74 0.57 -84.69 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.98 Total: 16.97 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 7.52 Total: 11.30 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -8.70 Total: -102.47 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.10 Total: -45.36 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -85.25 0.57 -84.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268926793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.728 kcal (2) G-P(sol) polarization free energy of solvation -85.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds