Wall clock time and date at job start Wed Apr 1 2020 00:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47451 * 2 1 4 4 C 1.46764 * 124.34922 * 90.00141 * 3 2 1 5 5 C 1.54473 * 105.47382 * 162.98629 * 4 3 2 6 6 C 1.54624 * 101.76748 * 25.41259 * 5 4 3 7 7 H 1.09005 * 110.48233 * 94.01270 * 6 5 4 8 8 N 1.46896 * 110.48971 * 216.52246 * 6 5 4 9 9 C 1.47962 * 110.99974 * 178.95237 * 8 6 5 10 10 C 1.53938 * 86.18293 * 222.42020 * 9 8 6 11 11 N 1.46490 * 113.73696 * 138.07994 * 10 9 8 12 12 C 1.46496 * 120.00449 * 243.62030 * 11 10 9 13 13 C 1.34786 * 119.99768 * 63.61597 * 11 10 9 14 14 O 1.21281 * 119.99909 * 0.02562 * 13 11 10 15 15 C 1.50704 * 119.99663 * 180.02562 * 13 11 10 16 16 S 1.80999 * 109.46734 * 179.97438 * 15 13 11 17 17 C 1.76201 * 99.99948 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99836 * 179.73001 * 17 16 15 20 20 N 1.31627 * 120.00065 * 0.27243 * 19 17 16 21 21 Si 1.86800 * 119.99767 * 180.27673 * 19 17 16 22 22 H 1.48504 * 109.47245 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47357 * 119.99664 * 21 19 17 24 24 H 1.48499 * 109.47177 * 239.99981 * 21 19 17 25 25 C 1.48188 * 111.06925 * 79.52198 * 8 6 5 26 26 C 1.34424 * 124.35003 * 270.00117 * 3 2 1 27 27 O 1.21280 * 124.93967 * 0.44479 * 26 3 2 28 28 H 1.08999 * 109.47267 * 300.00164 * 1 2 3 29 29 H 1.08998 * 109.47686 * 59.99610 * 1 2 3 30 30 H 1.08997 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47163 * 239.99856 * 2 1 3 32 32 H 1.09000 * 109.47222 * 120.00628 * 2 1 3 33 33 H 1.09006 * 110.24526 * 43.98195 * 4 3 2 34 34 H 1.08999 * 110.31742 * 282.02492 * 4 3 2 35 35 H 1.09004 * 110.97090 * 267.29436 * 5 4 3 36 36 H 1.08997 * 111.00458 * 143.55403 * 5 4 3 37 37 H 1.09003 * 113.75429 * 108.10561 * 9 8 6 38 38 H 1.08994 * 113.75841 * 336.73899 * 9 8 6 39 39 H 1.09006 * 113.73561 * 269.26129 * 10 9 8 40 40 H 1.09002 * 109.47158 * 265.07892 * 12 11 10 41 41 H 1.09006 * 109.47148 * 25.07597 * 12 11 10 42 42 H 1.09004 * 109.47401 * 145.07740 * 12 11 10 43 43 H 1.09001 * 109.47200 * 60.00722 * 15 13 11 44 44 H 1.09000 * 109.47083 * 300.00076 * 15 13 11 45 45 H 0.97001 * 119.99805 * 179.97438 * 20 19 17 46 46 H 1.09000 * 113.76233 * 23.24208 * 25 8 6 47 47 H 1.09002 * 113.82773 * 251.81153 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1745 3.3440 0.7487 6 6 2.7695 3.4753 -0.7378 7 1 1.9761 4.2138 -0.8532 8 7 3.9328 3.8400 -1.5573 9 6 3.5631 3.9443 -2.9862 10 6 4.8817 3.2045 -3.2753 11 7 4.7653 2.1746 -4.3106 12 6 4.9965 0.7678 -3.9738 13 6 4.4455 2.5215 -5.5732 14 8 4.2545 3.6863 -5.8521 15 6 4.3252 1.4620 -6.6381 16 16 3.8873 2.2375 -8.2138 17 6 3.8141 0.8118 -9.2466 18 1 4.0149 -0.1654 -8.8331 19 6 3.4932 0.9442 -10.5906 20 7 3.2490 2.1353 -11.0947 21 14 3.4080 -0.5682 -11.6837 22 1 3.7228 -1.7774 -10.8813 23 1 2.0415 -0.6923 -12.2514 24 1 4.3926 -0.4372 -12.7876 25 6 4.7771 2.6556 -1.8409 26 6 2.2712 2.0963 -1.1098 27 8 2.1209 1.6945 -2.2442 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8324 1.5529 1.9383 34 1 1.3644 2.5307 1.6444 35 1 4.2332 3.1032 0.8448 36 1 2.9314 4.2517 1.3010 37 1 3.5425 4.9677 -3.3608 38 1 2.6726 3.3747 -3.2520 39 1 5.7324 3.8682 -3.4300 40 1 6.0313 0.5064 -4.1952 41 1 4.8013 0.6114 -2.9128 42 1 4.3288 0.1387 -4.5626 43 1 3.5496 0.7499 -6.3562 44 1 5.2769 0.9408 -6.7413 45 1 3.0252 2.2278 -12.0340 46 1 4.2424 1.7083 -1.7711 47 1 5.7247 2.6511 -1.3021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269755010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:27 Heat of formation + Delta-G solvation = -33.897634 kcal Electronic energy + Delta-G solvation = -28464.436315 eV Core-core repulsion = 24581.498010 eV Total energy + Delta-G solvation = -3882.938305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.70489 -40.88804 -39.31251 -37.58971 -36.19030 -34.60692 -34.49298 -31.49750 -30.37765 -29.14463 -28.35940 -27.70051 -26.96251 -25.88917 -24.38358 -22.67310 -21.82276 -20.40378 -20.04634 -19.52360 -18.45613 -17.99094 -17.70356 -17.29047 -17.11306 -16.90455 -16.48011 -16.18843 -15.76180 -15.51346 -15.14326 -14.78922 -14.67644 -14.54889 -14.50240 -14.31929 -14.00775 -13.91422 -13.55890 -13.43569 -13.18339 -13.13859 -12.95686 -12.92007 -12.79452 -12.73357 -12.61479 -12.16643 -12.08719 -12.00978 -11.76699 -11.71056 -11.44473 -11.17474 -10.87267 -10.29838 -9.87004 -9.71100 -9.60787 -8.69577 -8.36417 -6.15049 1.22593 1.38690 1.39921 1.44096 1.55780 1.57825 1.98023 2.03975 2.25470 2.70728 2.97324 3.15775 3.30542 3.35028 3.54688 3.63655 3.83315 3.91011 4.01214 4.06991 4.10316 4.16784 4.21032 4.25911 4.34187 4.39529 4.44454 4.45943 4.58765 4.60237 4.68241 4.77062 4.79868 4.81515 4.90565 4.92253 4.99156 5.09031 5.19713 5.23204 5.39497 5.53008 5.60670 5.72522 6.05730 6.17968 6.24168 7.04246 7.07082 7.13898 8.73369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002653 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.814771 B =10550.322762 C =11494.573734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.614 5.614 4 C 0.099 3.901 5 C -0.106 4.106 6 C 0.011 3.989 7 H 0.115 0.885 8 N -0.444 5.444 9 C -0.008 4.008 10 C 0.119 3.881 11 N -0.599 5.599 12 C 0.078 3.922 13 C 0.532 3.468 14 O -0.559 6.559 15 C -0.121 4.121 16 S -0.149 6.149 17 C -0.546 4.546 18 H 0.080 0.920 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.002 2.998 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.271 1.271 25 C 0.007 3.993 26 C 0.480 3.520 27 O -0.561 6.561 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.272 0.728 46 H 0.085 0.915 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -5.194 34.620 35.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.348 5.348 4 C -0.023 4.023 5 C -0.144 4.144 6 C -0.102 4.102 7 H 0.133 0.867 8 N -0.166 5.166 9 C -0.137 4.137 10 C 0.016 3.984 11 N -0.333 5.333 12 C -0.064 4.064 13 C 0.320 3.680 14 O -0.437 6.437 15 C -0.272 4.272 16 S 0.078 5.922 17 C -0.693 4.693 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.823 3.177 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.121 4.121 26 C 0.267 3.733 27 O -0.440 6.440 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.513 -3.113 33.899 34.045 hybrid contribution -0.717 -2.416 -1.383 2.874 sum -0.203 -5.529 32.516 32.984 Atomic orbital electron populations 1.22103 0.95700 1.03028 1.01444 1.21486 0.94473 0.80655 1.03776 1.48590 1.64356 1.14147 1.07667 1.22422 1.00720 0.92696 0.86489 1.22656 1.01459 0.99946 0.90348 1.23190 0.95574 0.93484 0.97966 0.86732 1.68803 1.12284 1.29250 1.06286 1.24321 0.98533 1.01570 0.89322 1.22965 0.98293 0.90298 0.86889 1.47749 1.69371 1.09017 1.07192 1.21977 1.02201 0.79471 1.02779 1.20050 0.75860 0.88905 0.83209 1.90658 1.50502 1.21040 1.81497 1.23349 1.05649 1.00890 0.97322 1.85529 1.91346 1.15022 1.00317 1.23213 1.55177 0.93984 0.96967 0.90145 1.26167 0.93709 1.00659 0.98695 1.70196 1.45104 1.24751 1.14714 0.84871 0.78207 0.77166 0.77465 1.18087 1.19852 1.19621 1.24560 1.00705 0.93966 0.92866 1.22042 0.77081 0.89390 0.84818 1.90784 1.54528 1.76095 1.22576 0.91080 0.95454 0.90118 0.92058 0.86916 0.87302 0.89351 0.88653 0.86411 0.90249 0.90594 0.88136 0.90455 0.89316 0.91740 0.88497 0.87506 0.91932 0.89721 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.24 71.98 0.74 -1.28 16 2 C 0.12 1.37 6.65 86.38 0.57 1.94 16 3 N -0.61 -8.17 2.93 -818.00 -2.40 -10.57 16 4 C 0.10 0.50 7.35 86.83 0.64 1.14 16 5 C -0.11 -0.73 6.77 31.65 0.21 -0.52 16 6 C 0.01 0.18 3.12 44.91 0.14 0.32 16 7 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 8 N -0.44 -9.32 6.23 -882.27 -5.49 -14.82 16 9 C -0.01 -0.25 6.60 86.41 0.57 0.32 16 10 C 0.12 3.34 4.21 46.56 0.20 3.53 16 11 N -0.60 -19.24 3.13 -826.79 -2.59 -21.83 16 12 C 0.08 1.86 9.94 127.77 1.27 3.13 16 13 C 0.53 22.81 7.52 87.66 0.66 23.47 16 14 O -0.56 -28.44 15.31 -3.03 -0.05 -28.49 16 15 C -0.12 -5.45 4.77 71.24 0.34 -5.11 16 16 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 17 C -0.55 -32.72 9.50 67.96 0.65 -32.08 16 18 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -57.80 13.22 21.65 0.29 -57.52 16 21 Si 1.00 45.18 29.55 68.60 2.03 47.20 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 C 0.01 0.14 6.02 86.37 0.52 0.66 16 26 C 0.48 10.17 5.51 87.90 0.48 10.65 16 27 O -0.56 -17.48 13.97 -3.03 -0.04 -17.52 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.99 7.93 -2.38 -0.02 0.98 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 34 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.09 0.59 7.80 -2.39 -0.02 0.57 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.08 2.78 5.63 -2.39 -0.01 2.76 16 39 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.76 5.42 -2.38 -0.01 1.75 16 42 H 0.06 1.67 6.64 -2.39 -0.02 1.65 16 43 H 0.10 4.16 7.41 -2.40 -0.02 4.14 16 44 H 0.11 4.34 8.11 -2.39 -0.02 4.32 16 45 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 46 H 0.09 1.77 3.40 -2.39 -0.01 1.76 16 47 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -86.47 386.11 -0.99 -87.46 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.97 Total: 18.70 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 7.46 Total: 7.39 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -10.20 Total: -104.73 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.09 Total: -46.00 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -86.47 -0.99 -87.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269755010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.562 kcal (2) G-P(sol) polarization free energy of solvation -86.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds